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How/Where do I find mapped GO terms in EggNOG (preferably via FTP download)?
orthologs ftp go-terms mapping eggnog written 2.0 years ago by 17th Level Botanist • 40 • updated 5 weeks ago by sapuizait • 0
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1
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102
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1
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How to handle paralogs in pan-genomes?
orthologs pan-genome paralogs written 7 weeks ago by liorglic • 130
4
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1
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154
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1
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Retreiving 1:1 orthologs from Ensembl Compara using R Biomart
orthologs ensembl biomart compara R written 3 months ago by asente • 10 • updated 12 weeks ago by Emily_Ensembl ♦ 20k
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1
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130
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1
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Identifying very closely related proteins
orthologs alignment homologs blast written 3 months ago by Baby Bioinformatician • 70 • updated 3 months ago by Mensur Dlakic • 3.4k
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1
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304
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7 follow
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Finding orthologs in a organism with a genome duplication.
orthologs genome duplication allotetraploid written 5 months ago by bio.erikson • 20
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1
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384
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1
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Clarification of OMA tree metrics
orthologs oma species tree written 14 months ago by samche42 • 0 • updated 6 months ago by Biostar ♦♦ 20
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0
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274
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0
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Visualizing Orthologs and Paralogs genes
orthologs visualizing circos gene paralogs written 9 months ago by Ric • 290
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1
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1.1k
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1
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Problem with Proteinortho.pl
software error orthologs homologs blast written 2.6 years ago by JV • 390 • updated 9 months ago by paulmjklemm • 0
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1
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304
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1
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Downloading genomes from OmaDB with PyOMADB or OMA API
orthologs oma written 10 months ago by hannah.muelbaier • 0 • updated 9 months ago by adrian.altenhoff • 630
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1
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310
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1
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OMA gene vs splicing variants in the output
orthologs oma orthologs oma pyham written 10 months ago by mateusz.konczal • 0 • updated 10 months ago by adrian.altenhoff • 630
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1
answer
265
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1
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OMA browser: finding exact genome release information
orthologs genome oma orthology written 10 months ago by olbei.marton • 0 • updated 10 months ago by adrian.altenhoff • 630
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1
answer
267
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1
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OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
orthologs oma orthology written 10 months ago by eschang1 • 10 • updated 10 months ago by adrian.altenhoff • 630
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1
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281
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1
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Correct formatting for IDs in OMA standalone .splice files to properly identify splice variants
orthologs oma orthology written 11 months ago by eschang1 • 10
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286
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0
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OrthoMLC for plants proteomes?
gene orthologs paralogs written 13 months ago by thomasbersez • 50 • updated 11 months ago by Biostar ♦♦ 20
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2
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418
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2
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OMA error - download from gene ontology not working 404
orthologs oma written 12 months ago by nc52 • 10 • updated 12 months ago by Christophe Dessimoz • 640
0
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1
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279
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1
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Getting the highest taxonomy in the HOG database for a given OMA gene id
orthologs oma hog written 12 months ago by yogihooda88 • 10 • updated 12 months ago by Christophe Dessimoz • 640
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4
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375
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4
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OMA cannot evaluate boolean
orthologs oma issue bug written 13 months ago by thomasbersez • 50
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1
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792
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1
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Does MetaCyc or BioCyc have an equivalent of KEGG orthologs that could be blasted against locally?
metacyc orthologs biocyc humann2 metagenomics written 15 months ago by O.rka • 170 • updated 14 months ago by biouser • 20
3
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1
answer
389
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1
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Download cdna sequences from OMA
orthologs oma written 15 months ago by Biojl • 1.7k • updated 15 months ago by adrian.altenhoff • 630
3
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1
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559
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1
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Deprecated identifiers in Ensembl?
orthologs ensembl annotation written 16 months ago by Solowars • 50 • updated 16 months ago by Emily_Ensembl ♦ 20k
1
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2
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589
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2
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Use OrthoDB to retrieve the orthologs between human and bacteria
orthologs orthodb written 17 months ago by wangdp123 • 220 • updated 16 months ago by Christophe Dessimoz • 640
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1
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1.1k
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1
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Is this warning fatal in OMA
orthologs oma written 4.0 years ago by moranr • 260 • updated 17 months ago by RamRS ♦ 25k
1
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1
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431
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1
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Opinion on best way to taxonomically classify a genome
genome orthologs taxonomy phylogenomics written 18 months ago by msobol • 20 • updated 18 months ago by Carambakaracho • 2.0k
1
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1
answer
557
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1
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OMA standalone error
genome software error oma orthologs written 18 months ago by pbravakos • 0 • updated 18 months ago by adrian.altenhoff • 630
1
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1
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436
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1
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OMA - How to retrieve orthologs of only one representative of each taxonomy rank?
oma orthologs orthologs oma written 19 months ago by anusblat • 0 • updated 18 months ago by Christophe Dessimoz • 640
4
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2
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652
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2
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Trying to hack OMA to do specific All-v-All searches
orthologs oma written 19 months ago by jason.kwan • 0 • updated 18 months ago by Christophe Dessimoz • 640
0
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0
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606
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0
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Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 21 months ago by Solowars • 50
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1
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1.3k
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1
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Find out if a protein has an ortholog in EggNog DB
orthologs eggnog human written 4.0 years ago by peter pfand • 80 • updated 23 months ago by urema • 0
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0
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506
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0
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Efficient Sequence Length Comparison
orthologs python transcriptomics orthofinder written 23 months ago by alexander.trouern-trend • 0
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0
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638
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0
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InParanoid: score and cut off for indentify orthologs
orthologs inparanoid blast score written 24 months ago by Izal • 10
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