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Tool: Corona OMA Browser: orthologs among corona viruses including SARS-COV-1 and SARS-COV-2
orthologs comparative genomics phylogenetics tool written 19 days ago by Christophe Dessimoz • 660
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1
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84
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can standalone OMA be used on protein fasta (not genome)
orthologs oma written 5 weeks ago by fyfes • 20 • updated 5 weeks ago by adrian.altenhoff • 650
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79
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Pangenome analysis of the close bacterial genus
orthologs pangenome proteinortho protein identity written 4 months ago by djamalova.d • 10 • updated 3 months ago by Biostar ♦♦ 20
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1
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131
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1
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BiomaRt Many to Many Relationship filtering
orthologs biomart ensemble orthology written 4 months ago by iislam • 0 • updated 4 months ago by Ben_Ensembl • 1.5k
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How/Where do I find mapped GO terms in EggNOG (preferably via FTP download)?
orthologs ftp go-terms mapping eggnog written 2.4 years ago by 17th Level Botanist • 40 • updated 5 months ago by sapuizait • 0
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1
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224
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How to handle paralogs in pan-genomes?
orthologs pan-genome paralogs written 6 months ago by liorglic • 310
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1
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236
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Retreiving 1:1 orthologs from Ensembl Compara using R Biomart
orthologs ensembl biomart compara R written 7 months ago by asente • 10 • updated 7 months ago by Emily_Ensembl ♦ 21k
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181
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Identifying very closely related proteins
orthologs alignment homologs blast written 8 months ago by Baby Bioinformatician • 90 • updated 8 months ago by Mensur Dlakic • 5.8k
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Finding orthologs in a organism with a genome duplication.
orthologs genome duplication allotetraploid written 9 months ago by bio.erikson • 20
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Clarification of OMA tree metrics
orthologs oma species tree written 19 months ago by samche42 • 0 • updated 11 months ago by Biostar ♦♦ 20
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340
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Visualizing Orthologs and Paralogs genes
orthologs visualizing circos gene paralogs written 13 months ago by Ric • 290
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Problem with Proteinortho.pl
software error orthologs homologs blast written 3.0 years ago by JV • 400 • updated 13 months ago by paulmjklemm • 0
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1
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379
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1
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Downloading genomes from OmaDB with PyOMADB or OMA API
orthologs oma written 14 months ago by hannah.muelbaier • 0 • updated 14 months ago by adrian.altenhoff • 650
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389
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OMA gene vs splicing variants in the output
orthologs oma orthologs oma pyham written 14 months ago by mateusz.konczal • 0 • updated 14 months ago by adrian.altenhoff • 650
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1
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339
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1
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OMA browser: finding exact genome release information
orthologs genome oma orthology written 14 months ago by olbei.marton • 0 • updated 14 months ago by adrian.altenhoff • 650
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1
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353
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1
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OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
orthologs oma orthology written 15 months ago by eschang1 • 10 • updated 15 months ago by adrian.altenhoff • 650
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357
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1
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Correct formatting for IDs in OMA standalone .splice files to properly identify splice variants
orthologs oma orthology written 15 months ago by eschang1 • 10
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340
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0
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OrthoMLC for plants proteomes?
gene orthologs paralogs written 17 months ago by thomasbersez • 50 • updated 16 months ago by Biostar ♦♦ 20
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517
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OMA error - download from gene ontology not working 404
orthologs oma written 16 months ago by nc52 • 10 • updated 16 months ago by Christophe Dessimoz • 660
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1
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374
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1
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Getting the highest taxonomy in the HOG database for a given OMA gene id
orthologs oma hog written 16 months ago by yogihooda88 • 10 • updated 16 months ago by Christophe Dessimoz • 660
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478
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OMA cannot evaluate boolean
orthologs oma issue bug written 17 months ago by thomasbersez • 50
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1
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Does MetaCyc or BioCyc have an equivalent of KEGG orthologs that could be blasted against locally?
metacyc orthologs biocyc humann2 metagenomics written 19 months ago by O.rka • 180 • updated 18 months ago by biouser • 20
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1
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456
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1
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Download cdna sequences from OMA
orthologs oma written 19 months ago by Biojl • 1.7k • updated 19 months ago by adrian.altenhoff • 650
3
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1
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1
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Deprecated identifiers in Ensembl?
orthologs ensembl annotation written 20 months ago by Solowars • 50 • updated 20 months ago by Emily_Ensembl ♦ 21k
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Use OrthoDB to retrieve the orthologs between human and bacteria
orthologs orthodb written 21 months ago by wangdp123 • 240 • updated 20 months ago by Christophe Dessimoz • 660
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Is this warning fatal in OMA
orthologs oma written 4.4 years ago by moranr • 270 • updated 21 months ago by RamRS ♦ 27k
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483
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Opinion on best way to taxonomically classify a genome
genome orthologs taxonomy phylogenomics written 22 months ago by mss • 30 • updated 22 months ago by Carambakaracho • 2.2k
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1
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668
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OMA standalone error
genome software error oma orthologs written 23 months ago by pbravakos • 0 • updated 23 months ago by adrian.altenhoff • 650
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1
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518
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OMA - How to retrieve orthologs of only one representative of each taxonomy rank?
oma orthologs orthologs oma written 23 months ago by anusblat • 0 • updated 23 months ago by Christophe Dessimoz • 660
4
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2
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725
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Trying to hack OMA to do specific All-v-All searches
orthologs oma written 23 months ago by jason.kwan • 0 • updated 23 months ago by Christophe Dessimoz • 660
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