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Use OrthoDB to retrieve the orthologs between human and bacteria
orthologs orthodb written 25 days ago by wangdp123 • 120 • updated 25 days ago by h.mon ♦ 20k
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1
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829
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Is this warning fatal in OMA
orthologs oma written 2.6 years ago by moranr • 240 • updated 4 weeks ago by RamRS ♦ 18k
1
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1
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182
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Opinion on best way to taxonomically classify a genome
genome orthologs taxonomy phylogenomics written 6 weeks ago by msobol • 10 • updated 6 weeks ago by Carambakaracho • 550
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1
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147
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1
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OMA standalone error
genome software error oma orthologs written 9 weeks ago by pbravakos • 0 • updated 9 weeks ago by adrian.altenhoff • 400
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146
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1
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OMA - How to retrieve orthologs of only one representative of each taxonomy rank?
oma orthologs orthologs oma written 10 weeks ago by anusblat • 0 • updated 10 weeks ago by Christophe Dessimoz • 470
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2
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203
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Trying to hack OMA to do specific All-v-All searches
orthologs oma written 10 weeks ago by jason.kwan • 0 • updated 10 weeks ago by Christophe Dessimoz • 470
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244
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Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 4 months ago by Solowars • 30
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1
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943
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1
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Find out if a protein has an ortholog in EggNog DB
orthologs eggnog human written 2.7 years ago by peter pfand • 70 • updated 6 months ago by urema • 0
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208
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Efficient Sequence Length Comparison
orthologs python transcriptomics orthofinder written 7 months ago by alexander.trouern-trend • 0
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263
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InParanoid: score and cut off for indentify orthologs
orthologs inparanoid blast score written 7 months ago by Izal • 10
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1
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272
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1
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Gene List and Orthologs
orthologs oma e. coli written 8 months ago by shahroze786 • 0 • updated 8 months ago by genomax ♦ 57k
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1
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340
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1
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How/Where do I find mapped GO terms in EggNOG (preferably via FTP download)?
orthologs ftp go-terms mapping eggnog written 8 months ago by 17th Level Botanist • 10
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347
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comparison between two orthologs
orthologs coding sequence written 8 months ago by nitishd.dave • 20 • updated 8 months ago by Nari • 860
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1
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440
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OMA Warning Unknown character U
orthologs oma written 10 months ago by pnatsidis • 0 • updated 10 months ago by natasha.sernova • 3.1k
1
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2
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521
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OMA, Error in PropagateFunctionByGroup, invalid arguments in intersect (Mac OS)
orthologs oma written 20 months ago by linlinzhao.c • 0 • updated 10 months ago by andreag1987 • 0
2
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2
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365
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Will lowering the LengthTol parameter increase false positive links in Orthology Groups?
orthologs oma written 11 months ago by robert.zimmermann • 10 • updated 11 months ago by david_emms • 40
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604
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BUSCO scripts to output data
orthologs annotation busco single copy written 12 months ago by merwright • 0 • updated 11 months ago by Biostar ♦♦ 20
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344
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reducing memory consumption of circoletto
orthologs assembly circos synteny circoletto written 11 months ago by Ric • 190
2
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2
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575
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2
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Failure to launch OMA in array mode on SLURM cluster
orthologs oma slurm written 12 months ago by jeremias.br • 10
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557
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Retrieving homologues of human proteins using Ensembl REST API?
orthologs ensembl written 16 months ago by db534 • 0 • updated 14 months ago by Biostar ♦♦ 20
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573
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Problem with Proteinortho.pl
software error orthologs homologs blast written 15 months ago by JV • 340
1
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1
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663
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Bulky collection of the orthologs and paralogs data from Ensembl
orthologs ensembl paralogs written 17 months ago by wangdp123 • 120
4
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642
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1
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How to find orthologs in both complete and fragmented genomes using OMA Standalone ?
orthologs oma esprit written 18 months ago by amandinette • 10 • updated 18 months ago by Christophe Dessimoz • 470
5
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1
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652
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OMA current state and its updates
orthologs oma bacteria update written 18 months ago by natasha.sernova • 3.1k • updated 18 months ago by Christophe Dessimoz • 470
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831
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BLAST to find orthologs
orthologs python blast mirna written 19 months ago by alon.shtrikman • 0
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660
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orthologue mapping using circos
orthologs circos written 21 months ago by ashish • 200 • updated 21 months ago by Macspider • 2.6k
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1
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682
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[OMA] When input sequence data are DNA, OMA conversion in AA ?
orthologs oma orthologous aa dna written 21 months ago by pourbiostars • 0 • updated 21 months ago by Christophe Dessimoz • 470
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501
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perl orthoxml parser
orthologs written 21 months ago by qqq2395 • 0
1
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725
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[OMA] If my jobs stop (SGE) will the results be conserved (AllvsAll) in the cache folder ?
orthologs oma written 22 months ago by pourbiostars • 0
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931
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Reciprocal best hit by blast
orthologs blast written 23 months ago by qwzhang0601 • 60
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