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<prev • 58 results • page 1 of 2 • next >
12
votes
2
answers
348
views
8 follow
2
answers
Visualize multiple GFF files
overlap gff visualization statistics written 6 months ago by Anand Rao • 210 • updated 6 weeks ago by jrj.healey ♦ 10k
8
votes
2
answers
222
views
7 follow
2
answers
How to merge overlapping ranges by R/Python?
overlap R merge sequence python written 7 weeks ago by nkuhuangyan • 0 • updated 7 weeks ago by ATpoint ♦ 13k
1
vote
2
answers
205
views
2
answers
find overlapping Chip-seq peaks and return outerboundries
overlap chip-seq written 10 weeks ago by m.wekking • 10 • updated 10 weeks ago by ATpoint ♦ 13k
2
votes
3
answers
1.5k
views
3
answers
Tools to find overlapping/common interactions between two networks
overlap networks written 3.4 years ago by Naresh D J • 60 • updated 11 weeks ago by kuntal.bhusan • 20
1
vote
1
answer
692
views
1
answer
overlap BED files, but account for region name
overlap bed bedtools written 20 months ago by igor ♦ 7.3k • updated 3 months ago by Biostar ♦♦ 20
4
votes
3
answers
383
views
3
answers
Plot average expression profile from one bed file across overlapping regions from another bed file in R
bedtools bed R granges overlap written 4 months ago by newscient • 10 • updated 4 months ago by Nicolas Rosewick ♦ 7.3k
2
votes
1
answer
289
views
1
answer
Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 5 months ago by Anand Rao • 210 • updated 5 months ago by Alex Reynolds ♦ 27k
9
votes
3
answers
2.2k
views
6 follow
3
answers
How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 5.9 years ago by siyu • 130 • updated 5 months ago by Biostar ♦♦ 20
3
votes
1
answer
713
views
1
answer
finding overlapping genes
overlap awk written 2.2 years ago by Afagh • 70 • updated 6 months ago by Biostar ♦♦ 20
6
votes
3
answers
697
views
3
answers
Find consensus overlap between many bed files
genome bedtools intersect overlap written 7 months ago by goodez • 460 • updated 7 months ago by Alex Reynolds ♦ 27k
1
vote
0
answers
570
views
0
answers
Newbie Question: How to find overlap of multiple cellline datas
overlap crispr ngs written 19 months ago by skim • 30 • updated 8 months ago by Biostar ♦♦ 20
23
votes
3
answers
12k
views
23 follow
3
answers
Probability of gene list overlap
gene R overlap written 7.2 years ago by Nasir • 160 • updated 9 months ago by Biostar ♦♦ 20
2
votes
1
answer
537
views
1
answer
Comparing gene expression overlap with hypergeometric distribution
overlap rna-seq test written 10 months ago by norty89 • 0 • updated 10 months ago by Devon Ryan ♦ 88k
3
votes
2
answers
646
views
6 follow
2
answers
On the significance of the overlap between lists of genes
fisher test overlap significance written 11 months ago by elb • 160 • updated 11 months ago by e.rempel • 720
0
votes
0
answers
415
views
0
answers
Row-specific findOverlaps of two GRanges datasets
overlap R granges written 13 months ago by RogelioG • 0
4
votes
1
answer
1.1k
views
5 follow
1
answer
Read genomic ranges from a very big file in R
genome R genomicranges overlap written 13 months ago by bisansamara • 10
4
votes
1
answer
1000
views
5 follow
1
answer
Histogram showing overlap between 2 bed files
overlap histogram written 15 months ago by newscient • 10
0
votes
1
answer
917
views
1
answer
Infinium Methylation SNP
overlap snp cpg written 16 months ago by janhuang.cn • 130 • updated 16 months ago by andrew.j.skelton73 ♦ 5.5k
3
votes
1
answer
985
views
1
answer
Find overlapping coordinates between a bed file and multiple files in order and associate the coordinates with the original coordinate in tsv
overlap bed next-gen sequence written 19 months ago by skim • 30 • updated 19 months ago by Alex Reynolds ♦ 27k
2
votes
1
answer
775
views
1
answer
Pair end merging and statistical output
overlap alignment paired ends written 21 months ago by jomo018 • 470 • updated 21 months ago by Brian Bushnell ♦ 16k
5
votes
1
answer
1.5k
views
1
answer
Appropriate statistical test for overlap analyses?
overlap bedtools chi square statistics written 21 months ago by mmmmcandrew • 60 • updated 21 months ago by Michael Dondrup ♦ 45k
2
votes
2
answers
1000
views
2
answers
perl script for overlap algo
perl overlap alignment algorithm written 2.2 years ago by zunaira.ehsan21 • 0 • updated 2.2 years ago by Michael Dondrup ♦ 45k
0
votes
0
answers
973
views
0
answers
Use Hypergeometric analysis to model data from RNAseq
overlap R written 2.4 years ago by nicolas.hipp • 0
2
votes
1
answer
2.3k
views
1
answer
How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein Coding Genes ?
overlap paired-end rna-seq written 5.2 years ago by biorepine • 1.4k • updated 2.4 years ago by Biostar ♦♦ 20
1
vote
1
answer
2.3k
views
1
answer
Calculating statistical significance of overlap between two groups of genes - adapting hypergeometric test for my situation?
genome R genes significance overlap written 2.5 years ago by Rubal • 210 • updated 2.5 years ago by Nicolas Rosewick ♦ 7.3k
3
votes
1
answer
923
views
1
answer
How to facilitate the performance of overlap for GRanges objects (verifiable example is given)?
overlap R performance granges function written 2.6 years ago by Jurat Shahidin • 40
6
votes
1
answer
1.0k
views
1
answer
How to obtain chi-square statistics for overlaps of three GRanges objects by pair-wise?
overlap R chi-square dataframe written 2.6 years ago by Jurat Shahidin • 40 • updated 2.6 years ago by Giovanni M Dall'Olio ♦ 26k
32
votes
2
answers
8.7k
views
15 follow
2
answers
Statistical Measure Of Biological Significance For Overlapping Genomic Regions
overlap statistics written 7.7 years ago by Dataminer • 2.6k • updated 2.6 years ago by Biostar ♦♦ 20
10
votes
3
answers
2.9k
views
3
answers
Visualization of Homer mergePeaks output Venn?
overlap homer venn/euler chip-seq written 3.3 years ago by morovatunc • 400 • updated 2.8 years ago by Ryan Dale ♦ 4.8k
0
votes
1
answer
1.6k
views
1
answer
Calculate reciprocal overlap for thousands of samples
overlap perl cnv bedtools written 4.6 years ago by QVINTVS_FABIVS_MAXIMVS • 2.2k • updated 2.9 years ago by ebrown1955 • 290
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