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2
votes
1
answer
185
views
1
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overlap regions within a file
overlap R atac_seq written 4 weeks ago by pt.taklifi • 60
3
votes
1
answer
162
views
1
answer
overlap snp with regions in R
overlap snp written 5 weeks ago by pt.taklifi • 60 • updated 5 weeks ago by rpolicastro ♦ 3.2k
1
vote
0
answers
139
views
0
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calculating overlaps with Peak calls for each exon
overlap R bioconductor exon written 11 weeks ago by pt.taklifi • 60
6
votes
1
answer
295
views
1
answer
Compute the significance of an overlap between more than 2 gene sets
overlap gene sets statistics written 4 months ago by Eliran Turgeman • 10
11
votes
3
answers
2.8k
views
5 follow
3
answers
Find consensus overlap between many bed files
genome bedtools intersect overlap written 2.6 years ago by goodez • 480 • updated 7 months ago by Biostar ♦♦ 20
1
vote
0
answers
188
views
0
answers
How to get the best overlap
bedtools overlap written 7 months ago by g744695539 • 0
2
votes
1
answer
1.7k
views
7 follow
1
answer
Hypergeometric test of gene list overlap
gene R hypergeometric test overlap written 17 months ago by wstla27 • 10 • updated 8 months ago by biodiversity • 0
0
votes
1
answer
300
views
1
answer
combining / merging overlapping reads in bam file to one in silico long read
genome assembly sequence bam overlap written 8 months ago by Julia • 0
0
votes
0
answers
269
views
0
answers
Bedtools Fisher Genome File
bedtools genome fisher overlap chipseq written 9 months ago by megannj • 10 • updated 9 months ago by Pierre Lindenbaum ♦ 133k
0
votes
1
answer
259
views
1
answer
RepeatMasker overlap and interpretation
overlap repeat written 10 months ago by Picasa • 590 • updated 10 months ago by lieven.sterck ♦ 9.4k
0
votes
2
answers
472
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2
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Find overlapping sequences between pairs of protein fasta files
fasta overlap protein written 13 months ago by suzuBell • 60 • updated 13 months ago by Mensur Dlakic • 8.1k
0
votes
0
answers
273
views
0
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overlap (semi global) end alignment for two fasta files
overlap alignment edlib rna-seq semi-global written 18 months ago by madiha_shabbir46 • 0 • updated 18 months ago by GenoMax ♦ 94k
32
votes
3
answers
10k
views
16 follow
3
answers
Statistical Measure Of Biological Significance For Overlapping Genomic Regions
overlap statistics written 9.7 years ago by Dataminer • 2.7k • updated 19 months ago by rishi • 10
0
votes
0
answers
755
views
0
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Is the bioconductor RRHO R package p-value computation for two.sided completely wrong ?
overlap rrho rank-rank hypergeometric overlap written 20 months ago by Anthony • 0
3
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1
answer
2.1k
views
1
answer
converting Bed to Wig
overlap bed wig bigwig rtracklayer written 21 months ago by rahel14350 • 30 • updated 21 months ago by Alex Reynolds ♦ 31k
8
votes
1
answer
630
views
1
answer
How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 22 months ago by star • 270 • updated 22 months ago by Biostar ♦♦ 20
12
votes
2
answers
1.5k
views
8 follow
2
answers
Visualize multiple GFF files
overlap gff visualization statistics written 2.4 years ago by Anand Rao • 350 • updated 2.0 years ago by Joe ♦ 18k
8
votes
2
answers
1.5k
views
7 follow
2
answers
How to merge overlapping ranges by R/Python?
overlap R merge sequence python written 2.1 years ago by nkuhuangyan • 0 • updated 2.1 years ago by ATpoint ♦ 44k
1
vote
2
answers
875
views
2
answers
find overlapping Chip-seq peaks and return outerboundries
overlap chip-seq written 2.1 years ago by m.wekking • 10 • updated 2.1 years ago by ATpoint ♦ 44k
2
votes
3
answers
2.2k
views
3
answers
Tools to find overlapping/common interactions between two networks
overlap networks written 5.3 years ago by Naresh D J • 80 • updated 2.1 years ago by kuntal.bhusan • 20
1
vote
1
answer
1.1k
views
1
answer
overlap BED files, but account for region name
overlap bed bedtools written 3.6 years ago by igor ♦ 12k • updated 2.2 years ago by Biostar ♦♦ 20
4
votes
3
answers
1.2k
views
3
answers
Plot average expression profile from one bed file across overlapping regions from another bed file in R
bedtools bed R granges overlap written 2.3 years ago by newscient • 20 • updated 2.3 years ago by Nicolas Rosewick ♦ 9.3k
2
votes
1
answer
753
views
1
answer
Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 2.4 years ago by Anand Rao • 350 • updated 2.4 years ago by Alex Reynolds ♦ 31k
9
votes
3
answers
3.1k
views
6 follow
3
answers
How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 7.8 years ago by siyu • 140 • updated 2.4 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.1k
views
1
answer
finding overlapping genes
overlap awk written 4.1 years ago by Fatima • 890 • updated 2.4 years ago by Biostar ♦♦ 20
1
vote
0
answers
889
views
0
answers
Newbie Question: How to find overlap of multiple cellline datas
overlap crispr ngs written 3.5 years ago by skim • 50 • updated 2.6 years ago by Biostar ♦♦ 20
23
votes
3
answers
15k
views
23 follow
3
answers
Probability of gene list overlap
gene R overlap written 9.1 years ago by Nasir • 160 • updated 2.7 years ago by Biostar ♦♦ 20
5
votes
1
answer
2.3k
views
6 follow
1
answer
Comparing gene expression overlap with hypergeometric distribution
overlap rna-seq test written 2.8 years ago by norty89 • 10 • updated 2.8 years ago by Devon Ryan ♦ 98k
3
votes
2
answers
1.5k
views
6 follow
2
answers
On the significance of the overlap between lists of genes
fisher test overlap significance written 2.9 years ago by elb • 200 • updated 2.9 years ago by e.rempel • 980
0
votes
0
answers
1.4k
views
0
answers
Row-specific findOverlaps of two GRanges datasets
overlap R granges written 3.0 years ago by RogelioG • 0
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