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11
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3
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2.2k
views
5 follow
3
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 2.0 years ago by goodez • 480 • updated 28 days ago by Biostar ♦♦ 20
1
vote
0
answers
79
views
0
answers
How to get the best overlap
bedtools overlap written 4 weeks ago by g744695539 • 0
0
votes
1
answer
904
views
1
answer
Hypergeometric test of gene list overlap
gene R hypergeometric test overlap written 10 months ago by wstla27 • 0 • updated 7 weeks ago by biodiversity • 0
0
votes
1
answer
107
views
1
answer
combining / merging overlapping reads in bam file to one in silico long read
genome assembly sequence bam overlap written 8 weeks ago by Julia • 0
0
votes
0
answers
122
views
0
answers
Bedtools Fisher Genome File
bedtools genome fisher overlap chipseq written 3 months ago by megannj • 10 • updated 3 months ago by Pierre Lindenbaum ♦ 129k
0
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1
answer
134
views
1
answer
RepeatMasker overlap and interpretation
overlap repeat written 3 months ago by Picasa • 530 • updated 3 months ago by lieven.sterck ♦ 7.9k
0
votes
2
answers
256
views
2
answers
Find overlapping sequences between pairs of protein fasta files
fasta overlap protein written 6 months ago by suzuBell • 60 • updated 6 months ago by Mensur Dlakic • 5.8k
0
votes
0
answers
204
views
0
answers
overlap (semi global) end alignment for two fasta files
overlap alignment edlib rna-seq semi-global written 11 months ago by madiha_shabbir46 • 0 • updated 11 months ago by genomax ♦ 85k
32
votes
3
answers
9.9k
views
16 follow
3
answers
Statistical Measure Of Biological Significance For Overlapping Genomic Regions
overlap statistics written 9.1 years ago by Dataminer • 2.7k • updated 13 months ago by rishi • 10
0
votes
0
answers
502
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0
answers
Is the bioconductor RRHO R package p-value computation for two.sided completely wrong ?
overlap rrho rank-rank hypergeometric overlap written 13 months ago by Anthony • 0
3
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1
answer
1.2k
views
1
answer
converting Bed to Wig
overlap bed wig bigwig rtracklayer written 14 months ago by rahel14350 • 30 • updated 14 months ago by Alex Reynolds ♦ 30k
8
votes
1
answer
534
views
1
answer
How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 16 months ago by star • 240 • updated 16 months ago by Biostar ♦♦ 20
12
votes
2
answers
1.2k
views
8 follow
2
answers
Visualize multiple GFF files
overlap gff visualization statistics written 23 months ago by Anand Rao • 300 • updated 18 months ago by Joe ♦ 17k
8
votes
2
answers
1.1k
views
7 follow
2
answers
How to merge overlapping ranges by R/Python?
overlap R merge sequence python written 18 months ago by nkuhuangyan • 0 • updated 18 months ago by ATpoint ♦ 36k
1
vote
2
answers
684
views
2
answers
find overlapping Chip-seq peaks and return outerboundries
overlap chip-seq written 19 months ago by m.wekking • 10 • updated 19 months ago by ATpoint ♦ 36k
2
votes
3
answers
2.0k
views
3
answers
Tools to find overlapping/common interactions between two networks
overlap networks written 4.7 years ago by Naresh D J • 80 • updated 19 months ago by kuntal.bhusan • 20
1
vote
1
answer
1.0k
views
1
answer
overlap BED files, but account for region name
overlap bed bedtools written 3.1 years ago by igor ♦ 11k • updated 20 months ago by Biostar ♦♦ 20
4
votes
3
answers
1.0k
views
3
answers
Plot average expression profile from one bed file across overlapping regions from another bed file in R
bedtools bed R granges overlap written 21 months ago by newscient • 20 • updated 21 months ago by Nicolas Rosewick ♦ 8.8k
2
votes
1
answer
652
views
1
answer
Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 22 months ago by Anand Rao • 300 • updated 22 months ago by Alex Reynolds ♦ 30k
9
votes
3
answers
2.9k
views
6 follow
3
answers
How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 7.2 years ago by siyu • 130 • updated 22 months ago by Biostar ♦♦ 20
3
votes
1
answer
926
views
1
answer
finding overlapping genes
overlap awk written 3.6 years ago by Fatima • 590 • updated 23 months ago by Biostar ♦♦ 20
1
vote
0
answers
824
views
0
answers
Newbie Question: How to find overlap of multiple cellline datas
overlap crispr ngs written 3.0 years ago by skim • 40 • updated 2.0 years ago by Biostar ♦♦ 20
23
votes
3
answers
14k
views
23 follow
3
answers
Probability of gene list overlap
gene R overlap written 8.6 years ago by Nasir • 160 • updated 2.1 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.8k
views
1
answer
Comparing gene expression overlap with hypergeometric distribution
overlap rna-seq test written 2.2 years ago by norty89 • 0 • updated 2.2 years ago by Devon Ryan ♦ 95k
3
votes
2
answers
1.3k
views
6 follow
2
answers
On the significance of the overlap between lists of genes
fisher test overlap significance written 2.3 years ago by elb • 170 • updated 2.3 years ago by e.rempel • 890
0
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0
answers
1.1k
views
0
answers
Row-specific findOverlaps of two GRanges datasets
overlap R granges written 2.5 years ago by RogelioG • 0
5
votes
1
answer
1.9k
views
5 follow
1
answer
Read genomic ranges from a very big file in R
genome R genomicranges overlap written 2.5 years ago by bisansamara • 10
4
votes
1
answer
2.0k
views
5 follow
1
answer
Histogram showing overlap between 2 bed files
overlap histogram written 2.6 years ago by newscient • 20
2
votes
1
answer
1.6k
views
1
answer
Infinium Methylation SNP
overlap snp cpg written 2.7 years ago by janhuang.cn • 150 • updated 2.7 years ago by andrew.j.skelton73 ♦ 6.0k
3
votes
1
answer
2.0k
views
1
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Find overlapping coordinates between a bed file and multiple files in order and associate the coordinates with the original coordinate in tsv
overlap bed next-gen sequence written 2.9 years ago by skim • 40 • updated 2.9 years ago by Alex Reynolds ♦ 30k
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