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32
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3
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9.0k
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16 follow
3
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Statistical Measure Of Biological Significance For Overlapping Genomic Regions
overlap statistics written 8.1 years ago by Dataminer • 2.6k • updated 18 days ago by rishi • 10
0
votes
0
answers
122
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0
answers
Is the bioconductor RRHO R package p-value computation for two.sided completely wrong ?
overlap rrho rank-rank hypergeometric overlap written 5 weeks ago by Anthony • 0
3
votes
1
answer
147
views
1
answer
converting Bed to Wig
overlap bed wig bigwig rtracklayer written 8 weeks ago by rahel14350 • 30 • updated 8 weeks ago by Alex Reynolds ♦ 28k
8
votes
1
answer
294
views
1
answer
How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 3 months ago by star • 150 • updated 3 months ago by Biostar ♦♦ 20
12
votes
2
answers
520
views
8 follow
2
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Visualize multiple GFF files
overlap gff visualization statistics written 10 months ago by Anand Rao • 210 • updated 5 months ago by jrj.healey ♦ 12k
8
votes
2
answers
493
views
7 follow
2
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How to merge overlapping ranges by R/Python?
overlap R merge sequence python written 5 months ago by nkuhuangyan • 0 • updated 5 months ago by ATpoint ♦ 18k
1
vote
2
answers
348
views
2
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find overlapping Chip-seq peaks and return outerboundries
overlap chip-seq written 6 months ago by m.wekking • 10 • updated 6 months ago by ATpoint ♦ 18k
2
votes
3
answers
1.6k
views
3
answers
Tools to find overlapping/common interactions between two networks
overlap networks written 3.7 years ago by Naresh D J • 70 • updated 6 months ago by kuntal.bhusan • 20
1
vote
1
answer
774
views
1
answer
overlap BED files, but account for region name
overlap bed bedtools written 2.0 years ago by igor ♦ 7.7k • updated 8 months ago by Biostar ♦♦ 20
4
votes
3
answers
561
views
3
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Plot average expression profile from one bed file across overlapping regions from another bed file in R
bedtools bed R granges overlap written 8 months ago by newscient • 20 • updated 8 months ago by Nicolas Rosewick ♦ 7.7k
2
votes
1
answer
401
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1
answer
Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 9 months ago by Anand Rao • 210 • updated 9 months ago by Alex Reynolds ♦ 28k
9
votes
3
answers
2.4k
views
6 follow
3
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How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 6.2 years ago by siyu • 130 • updated 10 months ago by Biostar ♦♦ 20
3
votes
1
answer
771
views
1
answer
finding overlapping genes
overlap awk written 2.6 years ago by Afagh • 70 • updated 10 months ago by Biostar ♦♦ 20
6
votes
3
answers
1.1k
views
3
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 12 months ago by goodez • 460 • updated 12 months ago by Alex Reynolds ♦ 28k
1
vote
0
answers
631
views
0
answers
Newbie Question: How to find overlap of multiple cellline datas
overlap crispr ngs written 23 months ago by skim • 30 • updated 12 months ago by Biostar ♦♦ 20
23
votes
3
answers
13k
views
23 follow
3
answers
Probability of gene list overlap
gene R overlap written 7.5 years ago by Nasir • 160 • updated 13 months ago by Biostar ♦♦ 20
2
votes
1
answer
867
views
1
answer
Comparing gene expression overlap with hypergeometric distribution
overlap rna-seq test written 14 months ago by norty89 • 0 • updated 14 months ago by Devon Ryan ♦ 90k
3
votes
2
answers
882
views
6 follow
2
answers
On the significance of the overlap between lists of genes
fisher test overlap significance written 15 months ago by elb • 160 • updated 15 months ago by e.rempel • 770
0
votes
0
answers
551
views
0
answers
Row-specific findOverlaps of two GRanges datasets
overlap R granges written 17 months ago by RogelioG • 0
4
votes
1
answer
1.4k
views
5 follow
1
answer
Read genomic ranges from a very big file in R
genome R genomicranges overlap written 18 months ago by bisansamara • 10
4
votes
1
answer
1.3k
views
5 follow
1
answer
Histogram showing overlap between 2 bed files
overlap histogram written 19 months ago by newscient • 20
2
votes
1
answer
1.2k
views
1
answer
Infinium Methylation SNP
overlap snp cpg written 20 months ago by janhuang.cn • 150 • updated 20 months ago by andrew.j.skelton73 ♦ 5.7k
3
votes
1
answer
1.3k
views
1
answer
Find overlapping coordinates between a bed file and multiple files in order and associate the coordinates with the original coordinate in tsv
overlap bed next-gen sequence written 23 months ago by skim • 30 • updated 23 months ago by Alex Reynolds ♦ 28k
2
votes
1
answer
911
views
1
answer
Pair end merging and statistical output
overlap alignment paired ends written 2.1 years ago by jomo018 • 480 • updated 2.1 years ago by Brian Bushnell ♦ 16k
5
votes
1
answer
1.9k
views
1
answer
Appropriate statistical test for overlap analyses?
overlap bedtools chi square statistics written 2.1 years ago by mmmmcandrew • 60 • updated 2.1 years ago by Michael Dondrup ♦ 46k
2
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2
answers
1.1k
views
2
answers
perl script for overlap algo
perl overlap alignment algorithm written 2.5 years ago by zunaira.ehsan21 • 0 • updated 2.5 years ago by Michael Dondrup ♦ 46k
0
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0
answers
1.1k
views
0
answers
Use Hypergeometric analysis to model data from RNAseq
overlap R written 2.8 years ago by nicolas.hipp • 0
2
votes
1
answer
2.4k
views
1
answer
How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein Coding Genes ?
overlap paired-end rna-seq written 5.5 years ago by biorepine • 1.4k • updated 2.8 years ago by Biostar ♦♦ 20
1
vote
1
answer
2.6k
views
1
answer
Calculating statistical significance of overlap between two groups of genes - adapting hypergeometric test for my situation?
genome R genes significance overlap written 2.8 years ago by Rubal • 220 • updated 2.8 years ago by Nicolas Rosewick ♦ 7.7k
3
votes
1
answer
999
views
1
answer
How to facilitate the performance of overlap for GRanges objects (verifiable example is given)?
overlap R performance granges function written 2.9 years ago by Jurat Shahidin • 60
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