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<prev • 63 results • page 1 of 3 • next >
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Hypergeometric test of gene list overlap
gene R hypergeometric test overlap written 9 weeks ago by wstla27 • 0 • updated 9 weeks ago by benformatics • 1.1k
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99
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overlap (semi global) end alignment for two fasta files
overlap alignment edlib rna-seq semi-global written 12 weeks ago by madiha_shabbir46 • 0 • updated 12 weeks ago by genomax ♦ 72k
32
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3
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9.3k
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16 follow
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Statistical Measure Of Biological Significance For Overlapping Genomic Regions
overlap statistics written 8.4 years ago by Dataminer • 2.6k • updated 4 months ago by rishi • 10
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Is the bioconductor RRHO R package p-value computation for two.sided completely wrong ?
overlap rrho rank-rank hypergeometric overlap written 4 months ago by Anthony • 0
3
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1
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361
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1
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converting Bed to Wig
overlap bed wig bigwig rtracklayer written 5 months ago by rahel14350 • 30 • updated 5 months ago by Alex Reynolds ♦ 29k
8
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1
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359
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1
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How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 7 months ago by star • 190 • updated 7 months ago by Biostar ♦♦ 20
12
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2
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673
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8 follow
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Visualize multiple GFF files
overlap gff visualization statistics written 14 months ago by Anand Rao • 240 • updated 9 months ago by Joe ♦ 14k
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2
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7 follow
2
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How to merge overlapping ranges by R/Python?
overlap R merge sequence python written 9 months ago by nkuhuangyan • 0 • updated 9 months ago by ATpoint ♦ 24k
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2
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find overlapping Chip-seq peaks and return outerboundries
overlap chip-seq written 10 months ago by m.wekking • 10 • updated 10 months ago by ATpoint ♦ 24k
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3
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1.8k
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3
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Tools to find overlapping/common interactions between two networks
overlap networks written 4.0 years ago by Naresh D J • 80 • updated 10 months ago by kuntal.bhusan • 20
1
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1
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overlap BED files, but account for region name
overlap bed bedtools written 2.3 years ago by igor ♦ 8.6k • updated 11 months ago by Biostar ♦♦ 20
4
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3
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794
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3
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Plot average expression profile from one bed file across overlapping regions from another bed file in R
bedtools bed R granges overlap written 12 months ago by newscient • 20 • updated 12 months ago by Nicolas Rosewick ♦ 8.3k
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1
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469
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1
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Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 13 months ago by Anand Rao • 240 • updated 13 months ago by Alex Reynolds ♦ 29k
9
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3
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2.5k
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6 follow
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How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 6.5 years ago by siyu • 130 • updated 13 months ago by Biostar ♦♦ 20
3
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1
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817
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1
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finding overlapping genes
overlap awk written 2.9 years ago by Afagh • 70 • updated 14 months ago by Biostar ♦♦ 20
6
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3
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1.4k
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3
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 15 months ago by goodez • 460 • updated 15 months ago by Alex Reynolds ♦ 29k
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Newbie Question: How to find overlap of multiple cellline datas
overlap crispr ngs written 2.2 years ago by skim • 30 • updated 16 months ago by Biostar ♦♦ 20
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3
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23 follow
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Probability of gene list overlap
gene R overlap written 7.8 years ago by Nasir • 160 • updated 17 months ago by Biostar ♦♦ 20
2
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1
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1.1k
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1
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Comparing gene expression overlap with hypergeometric distribution
overlap rna-seq test written 18 months ago by norty89 • 0 • updated 18 months ago by Devon Ryan ♦ 92k
3
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2
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1.0k
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6 follow
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On the significance of the overlap between lists of genes
fisher test overlap significance written 19 months ago by elb • 160 • updated 19 months ago by e.rempel • 780
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Row-specific findOverlaps of two GRanges datasets
overlap R granges written 21 months ago by RogelioG • 0
4
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1
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1.5k
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5 follow
1
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Read genomic ranges from a very big file in R
genome R genomicranges overlap written 21 months ago by bisansamara • 10
4
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1
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1.5k
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5 follow
1
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Histogram showing overlap between 2 bed files
overlap histogram written 23 months ago by newscient • 20
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1
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1.4k
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1
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Infinium Methylation SNP
overlap snp cpg written 23 months ago by janhuang.cn • 150 • updated 23 months ago by andrew.j.skelton73 ♦ 5.8k
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1
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1.5k
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1
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Find overlapping coordinates between a bed file and multiple files in order and associate the coordinates with the original coordinate in tsv
overlap bed next-gen sequence written 2.2 years ago by skim • 30 • updated 2.2 years ago by Alex Reynolds ♦ 29k
2
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1
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1000
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1
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Pair end merging and statistical output
overlap alignment paired ends written 2.4 years ago by jomo018 • 480 • updated 2.4 years ago by Brian Bushnell ♦ 16k
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1
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2.3k
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1
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Appropriate statistical test for overlap analyses?
overlap bedtools chi square statistics written 2.5 years ago by mmmmcandrew • 70 • updated 2.5 years ago by Michael Dondrup ♦ 46k
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2
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1.3k
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2
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perl script for overlap algo
perl overlap alignment algorithm written 2.8 years ago by zunaira.ehsan21 • 0 • updated 2.8 years ago by Michael Dondrup ♦ 46k
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Use Hypergeometric analysis to model data from RNAseq
overlap R written 3.1 years ago by nicolas.hipp • 0
2
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1
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2.5k
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1
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How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein Coding Genes ?
overlap paired-end rna-seq written 5.8 years ago by biorepine • 1.4k • updated 3.1 years ago by Biostar ♦♦ 20
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