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find overlapping Chip-seq peaks and return outerboundries
overlap chip-seq written 6 days ago by m.wekking • 0 • updated 3 days ago by ATpoint ♦ 11k
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3
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Tools to find overlapping/common interactions between two networks
overlap networks written 3.2 years ago by Naresh D J • 60 • updated 14 days ago by kuntal.bhusan • 0
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643
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overlap BED files, but account for region name
overlap bed bedtools written 18 months ago by igor ♦ 7.1k • updated 6 weeks ago by Biostar ♦♦ 20
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Plot average expression profile from one bed file across overlapping regions from another bed file in R
bedtools bed R granges overlap written 9 weeks ago by newscient • 10 • updated 9 weeks ago by Nicolas Rosewick ♦ 7.0k
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Merge intervals between but NOT within 2 BED files
bedtools overlap merge bedops written 3 months ago by Anand Rao • 160 • updated 3 months ago by Alex Reynolds ♦ 26k
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6 follow
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How To Compute The Number Of Reads In Bam That Overlap With A Region? The Overlap Must Be 100%.
reads overlap bam written 5.7 years ago by siyu • 130 • updated 3 months ago by Biostar ♦♦ 20
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201
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Visualize multiple GFF files
overlap gff visualization statistics written 4 months ago by Anand Rao • 160
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1
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670
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1
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finding overlapping genes
overlap awk written 2.0 years ago by Afagh • 70 • updated 4 months ago by Biostar ♦♦ 20
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503
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 5 months ago by goodez • 420 • updated 5 months ago by Alex Reynolds ♦ 26k
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Newbie Question: How to find overlap of multiple cellline datas
overlap crispr ngs written 16 months ago by skim • 20 • updated 5 months ago by Biostar ♦♦ 20
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21 follow
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Probability of gene list overlap
gene R overlap written 7.0 years ago by Nasir • 140 • updated 7 months ago by Biostar ♦♦ 20
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1
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Comparing gene expression overlap with hypergeometric distribution
overlap rna-seq test written 8 months ago by norty89 • 0 • updated 8 months ago by Devon Ryan ♦ 86k
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525
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6 follow
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On the significance of the overlap between lists of genes
fisher test overlap significance written 9 months ago by elb • 160 • updated 9 months ago by e.rempel • 710
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Row-specific findOverlaps of two GRanges datasets
overlap R granges written 11 months ago by RogelioG • 0
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978
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5 follow
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Read genomic ranges from a very big file in R
genome R genomicranges overlap written 11 months ago by bisansamara • 10
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866
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5 follow
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Histogram showing overlap between 2 bed files
overlap histogram written 13 months ago by newscient • 10
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1
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Infinium Methylation SNP
overlap snp cpg written 13 months ago by janhuang.cn • 120 • updated 13 months ago by andrew.j.skelton73 ♦ 5.4k
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Find overlapping coordinates between a bed file and multiple files in order and associate the coordinates with the original coordinate in tsv
overlap bed next-gen sequence written 16 months ago by skim • 20 • updated 16 months ago by Alex Reynolds ♦ 26k
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1
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Pair end merging and statistical output
overlap alignment paired ends written 19 months ago by jomo018 • 450 • updated 19 months ago by Brian Bushnell ♦ 16k
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Appropriate statistical test for overlap analyses?
overlap bedtools chi square statistics written 19 months ago by mmmmcandrew • 60 • updated 19 months ago by Michael Dondrup ♦ 45k
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perl script for overlap algo
perl overlap alignment algorithm written 23 months ago by zunaira.ehsan21 • 0 • updated 23 months ago by Michael Dondrup ♦ 45k
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Use Hypergeometric analysis to model data from RNAseq
overlap R written 2.2 years ago by nicolas.hipp • 0
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How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein Coding Genes ?
overlap paired-end rna-seq written 5.0 years ago by biorepine • 1.4k • updated 2.3 years ago by Biostar ♦♦ 20
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Calculating statistical significance of overlap between two groups of genes - adapting hypergeometric test for my situation?
genome R genes significance overlap written 2.3 years ago by Rubal • 210 • updated 2.3 years ago by Nicolas Rosewick ♦ 7.0k
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How to facilitate the performance of overlap for GRanges objects (verifiable example is given)?
overlap R performance granges function written 2.4 years ago by Jurat Shahidin • 40
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How to obtain chi-square statistics for overlaps of three GRanges objects by pair-wise?
overlap R chi-square dataframe written 2.4 years ago by Jurat Shahidin • 40 • updated 2.4 years ago by Giovanni M Dall'Olio ♦ 26k
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15 follow
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Statistical Measure Of Biological Significance For Overlapping Genomic Regions
overlap statistics written 7.6 years ago by Dataminer • 2.5k • updated 2.4 years ago by Biostar ♦♦ 20
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Visualization of Homer mergePeaks output Venn?
overlap homer venn/euler chip-seq written 3.1 years ago by morovatunc • 380 • updated 2.6 years ago by Ryan Dale ♦ 4.8k
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Calculate reciprocal overlap for thousands of samples
overlap perl cnv bedtools written 4.4 years ago by QVINTVS_FABIVS_MAXIMVS • 2.2k • updated 2.7 years ago by ebrown1955 • 290
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Remove overlapping features from a gtf file?
gtf overlap bedtools cds written 3.1 years ago by RoryC • 10
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