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6
votes
3
answers
144
views
3
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 22 days ago by goodez • 240 • updated 22 days ago by Alex Reynolds ♦ 24k
1
vote
0
answers
430
views
0
answers
Newbie Question: How to find overlap of multiple cellline datas
overlap crispr ngs written 12 months ago by skim • 20 • updated 29 days ago by Biostar ♦♦ 20
21
votes
3
answers
10k
views
20 follow
3
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Probability of gene list overlap
gene R overlap written 6.6 years ago by Nasir • 140 • updated 9 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
198
views
1
answer
Comparing gene expression overlap with hypergeometric distribution
overlap rna-seq test written 3 months ago by norty89 • 0 • updated 3 months ago by Devon Ryan ♦ 81k
3
votes
2
answers
299
views
6 follow
2
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On the significance of the overlap between lists of genes
fisher test overlap significance written 4 months ago by elb • 110 • updated 4 months ago by e.rempel • 660
0
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0
answers
230
views
0
answers
Row-specific findOverlaps of two GRanges datasets
overlap R granges written 6 months ago by RogelioG • 0
4
votes
1
answer
605
views
5 follow
1
answer
Read genomic ranges from a very big file in R
genome R genomicranges overlap written 6 months ago by bisansamara • 10
4
votes
1
answer
560
views
5 follow
1
answer
Histogram showing overlap between 2 bed files
overlap histogram written 8 months ago by newscient • 10
0
votes
1
answer
528
views
1
answer
Infinium Methylation SNP
overlap snp cpg written 8 months ago by janhuang.cn • 80 • updated 8 months ago by andrew.j.skelton73 ♦ 5.1k
3
votes
1
answer
665
views
1
answer
Find overlapping coordinates between a bed file and multiple files in order and associate the coordinates with the original coordinate in tsv
overlap bed next-gen sequence written 11 months ago by skim • 20 • updated 11 months ago by Alex Reynolds ♦ 24k
1
vote
1
answer
457
views
1
answer
overlap BED files, but account for region name
overlap bed bedtools written 13 months ago by igor ♦ 6.3k • updated 13 months ago by Chris Miller ♦ 20k
2
votes
1
answer
533
views
1
answer
Pair end merging and statistical output
overlap alignment paired ends written 14 months ago by jomo018 • 330 • updated 14 months ago by Brian Bushnell ♦ 15k
5
votes
1
answer
941
views
1
answer
Appropriate statistical test for overlap analyses?
overlap bedtools chi square statistics written 14 months ago by mmmmcandrew • 60 • updated 14 months ago by Michael Dondrup ♦ 44k
2
votes
2
answers
763
views
2
answers
perl script for overlap algo
perl overlap alignment algorithm written 19 months ago by zunaira.ehsan21 • 0 • updated 19 months ago by Michael Dondrup ♦ 44k
3
votes
1
answer
559
views
1
answer
finding overlapping genes
overlap awk written 19 months ago by Afagh • 70 • updated 19 months ago by Alex Reynolds ♦ 24k
0
votes
0
answers
654
views
0
answers
Use Hypergeometric analysis to model data from RNAseq
overlap R written 22 months ago by nicolas.hipp • 0
2
votes
1
answer
2.1k
views
1
answer
How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein Coding Genes ?
overlap paired-end rna-seq written 4.6 years ago by biorepine • 1.4k • updated 22 months ago by Biostar ♦♦ 20
1
vote
1
answer
1.6k
views
1
answer
Calculating statistical significance of overlap between two groups of genes - adapting hypergeometric test for my situation?
genome R genes significance overlap written 22 months ago by Rubal • 200 • updated 22 months ago by Nicolas Rosewick ♦ 6.5k
3
votes
1
answer
796
views
1
answer
How to facilitate the performance of overlap for GRanges objects (verifiable example is given)?
overlap R performance granges function written 2.0 years ago by Jurat Shahidin • 30
6
votes
1
answer
781
views
1
answer
How to obtain chi-square statistics for overlaps of three GRanges objects by pair-wise?
overlap R chi-square dataframe written 2.0 years ago by Jurat Shahidin • 30 • updated 2.0 years ago by Giovanni M Dall'Olio ♦ 26k
32
votes
2
answers
8.1k
views
15 follow
2
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Statistical Measure Of Biological Significance For Overlapping Genomic Regions
overlap statistics written 7.2 years ago by Dataminer • 2.5k • updated 2.0 years ago by Biostar ♦♦ 20
10
votes
3
answers
2.4k
views
3
answers
Visualization of Homer mergePeaks output Venn?
overlap homer venn/euler chip-seq written 2.7 years ago by morovatunc • 360 • updated 2.2 years ago by Ryan Dale ♦ 4.7k
0
votes
1
answer
1.4k
views
1
answer
Calculate reciprocal overlap for thousands of samples
overlap perl cnv bedtools written 4.0 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k • updated 2.3 years ago by ebrown1955 • 270
2
votes
2
answers
1.2k
views
2
answers
Tools to find overlapping/common interactions between two networks
overlap networks written 2.8 years ago by Naresh D J • 50 • updated 2.6 years ago by abascalfederico • 1.0k
0
votes
2
answers
1.3k
views
2
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Remove overlapping features from a gtf file?
gtf overlap bedtools cds written 2.7 years ago by RoryC • 10
0
votes
1
answer
711
views
1
answer
Gene names from NCBI is not able to use for overlapping in species comparison
ncbi overlap comparison venn conversion written 2.7 years ago by Amk • 120 • updated 2.7 years ago by abascalfederico • 1.0k
2
votes
1
answer
673
views
1
answer
How to see if DEGs are grouped in genome?
overlap deg rna-seq written 2.8 years ago by Parham • 1.3k • updated 2.8 years ago by Christian • 2.6k
2
votes
4
answers
926
views
4
answers
bedop: output overlap for each region in a file
overlap bedop written 2.8 years ago by User 7754 • 140 • updated 2.8 years ago by Alex Reynolds ♦ 24k
4
votes
2
answers
893
views
2
answers
Generate heatmap or table showing genes found in multiple tests
overlap comparative genomics venn heatmap written 2.9 years ago by Rubal • 200 • updated 2.9 years ago by Alternative • 210
7
votes
2
answers
1.3k
views
2
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Best to overlap hundreds of BED files to one master BED file?
overlap bed intersect written 3.0 years ago by Ian ♦ 5.2k • updated 3.0 years ago by Alex Reynolds ♦ 24k
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