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GenomicRanges based on indices or more conditions, and add column from match

R genomicranges overlaps written 4 months ago by User 7754 • 170

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How to extract all ONT reads that connect/overlaps two or more contigs ?

reads nanopore scaffolding overlaps written 11 months ago by BioGeek • 140

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How to plot overlapping fragments in Circos ?

circos plots overlaps written 12 months ago by BioGeek • 140

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2.4k

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How to find overlapping regions among three bed files [Solved]

bedtools overlaps written 3.2 years ago by Bioradical • 50 • updated 3.2 years ago by Alex Reynolds ♦ 27k

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Thank you very much! You are right!
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...and what does that log file state? Look for warning and/or error messages.
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Hi All I have used MyCC.py but am not able to get any output except the log file. MyCC.py mg_s...
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Is this for research or for clinical diagnostics? Did the source data come from array CGH, SNP ar...
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Hi Fil, I think we've been in contact already. My suggestions so far are: - Use `metrics` on the...
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CNVkit plots the samples in the order that you list the .cns files on the command. It doesn't do ...
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Thanks for reporting, I've filed this issue in the project's GitHub repo: https://github.com/etal...
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input: $ ls resFileU.fasta resFileXXX.fasta resFileYYYYYY.fasta U.afa XXX.afa YYYYYY...
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try: $ ls seqrunID_1.fastq seqrunID_2.fastq $ for i in *1.fastq; do echo his...
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You can try to download miRNA and other types of TCGA data from this repository: http://firebro...
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Try [LinkedOmics][1] and other TCGA data portals. [1]: http://linkedomics.org/
C: samtools filter proper paired alignment by mynameliuxiang • 0
thank you, i got it. I mistook about supplement alignment and second alignment. your post is ver...

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