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written 3.0 years ago by
Bioradical • 50
• updated
3.0 years ago by
Alex Reynolds ♦ 26k
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Recent Replies
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C: Error in get(cdfname, object 'mm430mmentrezgcdf' not found by
Santosh Anand • 4.1k
I've the feeling that there is some issue with the names. You may check these things: 1. what do...
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C: Error in get(cdfname, object 'mm430mmentrezgcdf' not found by
Walter Jessen • 80
Thanks for catching the version error Santosh. Deleted, built and installed from source the 10.0 ...
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C: K-means With Many Clusters: Quick-TRANSfer steps exceeded by
Santosh Anand • 4.1k
check also https://stackoverflow.com/questions/21382681/kmeans-quick-transfer-stage-steps-exceede...
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C: bash & quickGO to download gene symbols of a GO term by
Adrian Pelin • 2.2k
Yeah I noticed that. The problem is that it's not supposed to open as a webpage but rather as a t...
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C: CpG islands for ARS-UCD1.2 Bos taurus genome? by
dango147 • 0
Thanks vkkodali, that was helpful. I'll also write to the helpdesk
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C: No mismatch allowed setting in Bowtie2 (-N 0 does not help) by
Santosh Anand • 4.1k
MAX, MIN is for penalty according to Quality of base. You may set both to same and a very high nu...
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C: bash & quickGO to download gene symbols of a GO term by
genomax ♦ 58k
There is definitely output in a web page (just try the URL standalone `http://www.ebi.ac.uk/Quick...
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A: K-means With Many Clusters: Quick-TRANSfer steps exceeded by
Ark • 60
I have been working with this some more and have come to the conclusion that this particular warn...
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C: No mismatch allowed setting in Bowtie2 (-N 0 does not help) by
Ankit • 30
It seems MAX,MIN is only shown in manual (`--mp MX,MN`). The downloaded bowtie2 version I have i...
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C: DESeq2 and P values by
Santosh Anand • 4.1k
Can you confirm you are plotting the raw pValue, and not the adjusted one (Padj)?
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C: scRNA-seq, SEURAT, NormalizeData, ScaleData, PCA, CCA ... by
igor ♦ 7.0k
I guess I (and the Seurat tutorial) did not explicitly mention the primary objective. Yes, the sc...
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C: No mismatch allowed setting in Bowtie2 (-N 0 does not help) by
Ankit • 30
Thanks for the reply. Mismatch penalty has MAX,MIN values. If I set MAX as 10000, what should be...
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