oxford nanopore Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: oxford nanopore • reset

or Classic search

votes

answers

361

views

5 follow

answers

Tutorial: Using the MinION MinKNOW software on Ubuntu 1604

tutorial minion long reads oxford nanopore written 10 weeks ago by colindaven • 1.7k

vote

answers

165

views

answers

Mapping quality in Oxford Nanopore

minimap2 mapping quality oxford nanopore written 9 weeks ago by rah • 20 • updated 11 days ago by Biostar ♦♦ 20

votes

answers

views

answers

Nanopore data workflow for detecting variance

snps nanopolish oxford nanopore canu written 11 weeks ago by s.m.frampton • 10

votes

answer

404

views

answer

QC of Oxford Nanopore fastq files with NanoPlot

long reads tool oxford nanopore written 4 months ago by s.m.frampton • 10 • updated 4 months ago by WouterDeCoster ♦ 41k

votes

answer

1.4k

views

answer

Remove adaptaters from ONT reads : An alternative to Porechop ?

promethion minion ont gridion oxford nanopore written 10 months ago by Roxane Boyer • 1.0k • updated 10 months ago by WouterDeCoster ♦ 41k

votes

answers

2.5k

views

7 follow

answers

Tool: NanoPack: Scripts for long read sequencing data processing and analysis: NanoPlot, NanoFilt, NanoStat, NanoLyse, NanoComp

long reads tool pacbio oxford nanopore written 2.0 years ago by WouterDeCoster ♦ 41k

votes

answer

1.8k

views

9 follow

answer

Oxford Nanopore BWA MEM alignments

long reads bwa mem bwa oxford nanopore written 2.4 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k • updated 2.4 years ago by WouterDeCoster ♦ 41k

vote

answers

1.5k

views

answers

News: Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 November 2016, Edinburgh

bioinformatics news minion training oxford nanopore written 3.0 years ago by Bert Overduin • 3.6k

Recent Votes

Recent Locations • All »

United States, 13 minutes ago

Recent Awards • All »

Scholar to WouterDeCoster ♦ 41k
Appreciated to Pierre Lindenbaum ♦ 123k
Commentator to WouterDeCoster ♦ 41k
Commentator to Pierre Lindenbaum ♦ 123k
Popular Question to RamRS ♦ 24k
Good Answer to Chris Miller ♦ 21k

Recent Replies

C: Meta-analysis on microaray data, when a sinlge experiment contains diferent tiss by catechize.2.learn • 80
Chrome is available to me but makes my laptop sluggish. FYI I also used Slimjet (also based on bl...
C: Clipping primer after alignment by finswimmer ♦ 12k
Hi Michael, thanks for your suggestion. Get the positions to clip is the easy part, but doing th...
C: Plotting file eigenvec by chrchang523 ♦ 5.5k
That depends on how you read the file with R. For consistency with VCF, practically all plink2-o...
C: Isoforms of an enzyme by Natasha • 30
Thanks a lot . I could find all the data in the enzyme.dat file provided [here][1]. I've to parse...
C: Plotting file eigenvec by Shicheng Guo • 7.7k
Hi Chris, Why there is a "#" in the header of plink2.eigenvec? when R read "plink2.eigenvec", "#...
A: GISTIC 2.0 markers by Kevin Blighe ♦ 48k
The markers file contains the positions of the probes before segmentation was performed. You do ...
C: remove non biallelic SNPs from ped by Shicheng Guo • 7.7k
--biallelic-only is retired. Use e.g. "--max-alleles 2" instead
C: How to analyze micoarray data with more than one source. by Kevin Blighe ♦ 48k
There was a similar question posted around the same time as yours: https://www.biostars.org/p/399...
C: A reliable tool to predict attenuators in bacterial genomes by natasha.sernova • 3.6k
Thank you very much!
C: A reliable tool to predict attenuators in bacterial genomes by Mensur Dlakic • 1.3k
I don't know enough about attenuators to answer that question conclusively, but I am pretty sure ...
C: Meta-analysis on microaray data, when a sinlge experiment contains diferent tiss by genomax ♦ 71k
I am not sure if Chrome browser is available in your locale. You should give that a try.
A: @RG ( read group ) in neandertals by WouterDeCoster ♦ 41k
Because it is not required. You can set or change a read group using samtools `addreplacerg`, or ...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 531 users visited in the last hour