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QC of Oxford Nanopore fastq files with NanoPlot

long reads tool oxford nanopore written 1 day ago by s.m.frampton • 0 • updated 1 day ago by WouterDeCoster ♦ 39k

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Remove adaptaters from ONT reads : An alternative to Porechop ?

promethion minion ont gridion oxford nanopore written 6 months ago by Roxane Boyer • 940 • updated 6 months ago by WouterDeCoster ♦ 39k

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Tool: NanoPack: Scripts for long read sequencing data processing and analysis: NanoPlot, NanoFilt, NanoStat, NanoLyse, NanoComp

long reads tool pacbio oxford nanopore written 20 months ago by WouterDeCoster ♦ 39k

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Oxford Nanopore BWA MEM alignments

long reads bwa mem bwa oxford nanopore written 2.1 years ago by QVINTVS_FABIVS_MAXIMVS • 2.2k • updated 2.1 years ago by WouterDeCoster ♦ 39k

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News: Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 November 2016, Edinburgh

bioinformatics news minion training oxford nanopore written 2.7 years ago by Bert Overduin • 3.6k

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Recent Replies

C: Bash not finding file by SMK • 410
You're welcome. This is already a new question, please consider posting to a new one.
C: Bash not finding file by mac03pat • 10
Seems to have worked, thank you!. I beleive now I'm running into problems with the package itself...
C: Bash not finding file by SMK • 410
I see. Try again with: ``` for infile in ~/inputs/*.gb; do antismash $infile --taxon fungi --inp...
C: Bash not finding file by mac03pat • 10
(antismash) macpat@Debian9:~$ for infile in ~/inputs/*.gb; do echo $infile; done /home/ma...
C: Bash not finding file by SMK • 410
Can you show us what you get when you do: `for infile in ~/inputs/*.gb; do echo $infile; done`?
C: Scientific Programmer DSM Biotechnology Center, Delft, The Netherlands by cleb • 50
Looks much better now.
A: Where can I download GO terms and their associated E. coli genes? by EagleEye ♦ 6.3k
Have a look at this posts, https://www.biostars.org/p/72657/#380837 https://www.biostars.org/p/...
A: Where can I download GO terms and their associated E. coli genes? by SMK • 410
A tricky way but works well using `R`: ``` > library(tidyverse) > library(GO.db) > unip...
A: perl fix code (Help :) ) by SMK • 410
Hi [Elza Chotza][1], Although [93% of Paint Splatters are Valid Perl Programs][2], you still hav...
A: Bash One-liners collection on Github by stephannie.baker8 • 0
I never thought github can be used like this way also. great job.
C: same experiment, different values with my heat map. Any help? by stephannie.baker8 • 0
Thank you so much it was a great help. was facing the same
A: Keeping only common variants in the merged VCF file by husensofteng • 70
I am not sure if I understand the question correctly, but it sounds as a line filtering issue to ...

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