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Tutorial: Using the MinION MinKNOW software on Ubuntu 1604

tutorial minion long reads oxford nanopore written 16 months ago by colindaven • 2.5k

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ONT fast5 basecalling

fast5 basecalling oxford nanopore sequencing written 9 months ago by a.lapin • 0 • updated 9 months ago by WouterDeCoster ♦ 44k

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533

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Forum: Ru/Read Until in Nanopore sequencers

sequencing forum alignment oxford nanopore written 9 months ago by jean.elbers • 1.5k

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Oxford Nanopore and Coverage

coverage oxford nanopore written 9 months ago by AP • 100

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258

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What is wrong with my Nanopore lncRNA pipeline?

lncrna oxford nanopore written 12 months ago by niradsp • 0

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287

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Tool: nanotimeparse - a bash solution for parsing oxford nanopore fastq on generation time

long read fastq parsing tool time oxford nanopore written 13 months ago by raplayer • 10

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Mapping quality in Oxford Nanopore

minimap2 mapping quality oxford nanopore written 16 months ago by rah • 20 • updated 14 months ago by Biostar ♦♦ 20

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320

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Nanopore data workflow for detecting variance

snps nanopolish oxford nanopore canu written 17 months ago by s.m.frampton • 10

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QC of Oxford Nanopore fastq files with NanoPlot

long reads tool oxford nanopore written 18 months ago by s.m.frampton • 10 • updated 18 months ago by WouterDeCoster ♦ 44k

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Remove adaptaters from ONT reads : An alternative to Porechop ?

promethion minion ont gridion oxford nanopore written 2.0 years ago by Rox • 1.2k • updated 2.0 years ago by WouterDeCoster ♦ 44k

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Tool: NanoPack: Scripts for long read sequencing data processing and analysis: NanoPlot, NanoFilt, NanoStat, NanoLyse, NanoComp

long reads tool pacbio oxford nanopore written 3.2 years ago by WouterDeCoster ♦ 44k

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Oxford Nanopore BWA MEM alignments

long reads bwa mem bwa oxford nanopore written 3.6 years ago by QVINTVS_FABIVS_MAXIMVS • 2.4k • updated 3.6 years ago by WouterDeCoster ♦ 44k

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News: Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 November 2016, Edinburgh

bioinformatics news minion training oxford nanopore written 4.2 years ago by Bert Overduin • 3.7k

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Recent Replies

C: How to reproduce a stacked bar chart in R by deathmagnetic20 • 10
Thank you! My problem is that I have a table data format like this one, so I dont know how to re...
A: How to reproduce a stacked bar chart in R by bioinformatics2020 • 390
`Data` is a data.frame that has the TCGA barcodes in a column called "barcodes", relative percent...
C: How to reproduce a stacked bar chart in R by deathmagnetic20 • 10
Reposted the image, sorry!
C: How I can get all the information of proteins? by yueli7 • 190
Hello genomax, Thank you so much for your comments! I try to improve my question. Thank you ag...
C: Split and recombine columns with R by bioinformatics2020 • 390
Can you post what the data.frame looks like currently?
C: columns error by bioinformatics2020 • 390
Give a reproducible example. Show us a few lines of the data.frame you are trying to change colum...
C: How to reproduce a stacked bar chart in R by bioinformatics2020 • 390
Can you repost the image? It's not showing up.
C: Blast command line by lieven.sterck ♦ 8.9k
is that a DB you created yourself locally? if so (and seeing that adding sallacc only returns th...
C: Blast command line by 5heikki ♦ 9.0k
Does your db actually include such info? Maybe there's a map file you can later join with the bla...
A: Convert coverage values to number of occurrence by Pierre Lindenbaum ♦ 131k
awk '/^#/ {print;next} {printf("%s\t%s",$1,$2);for(i=3;i<=NF;i++) {printf("\t%d",$i=="."?0...
C: SV detect method based on genome assemble by samuel.a.odonnell • 60
Are you asking for SV detection based on whole genome alignment? I.e. your new assembly versus th...
A: Blast command line by doinelpierrot • 0
I have tried sallacc and it gives me also the swissprot accession. Is there any way to also get t...

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