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gonzalezb549
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cellranger is for sure installed. A sample script using the same commands just different fastq paths worked fine but for some reason this s…
Comment: Cellranger count.srun issues
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gonzalezb549
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The path used has worked on previous scripts but I tried what you said. It still resulted in the same error.
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You don't have to change the default `--sjdbOverhang` value unless you have very short reads (less than 50 bp; see [here][1]). If your read…
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> cellranger: command not found.
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Well, did you make sure cellranger was installed?
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Hi,
Please try CaTS: http://csg.sph.umich.edu/abecasis/cats/
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I just noticed the colourbar above. For that it would be preferable to use slicing notation to assign those regions compared to looping and…
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