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<prev • 114 results • page 1 of 4 • next >
7
votes
2
answers
125
views
2
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Use PacBio FASTQ reads to polish\correct a PacBio Fasta assembly without Quiver
assembly fastq pacbio polish correct written 6 days ago by gabri • 10 • updated 6 days ago by sutturka • 80
0
votes
0
answers
55
views
0
answers
Problem installing multibreak-SV
sv multibreak-sv install pacbio written 7 days ago by cristian • 50
0
votes
0
answers
66
views
0
answers
How to calculate the sequence change of LoRDEC
tgs alignment lordec pacbio error correction written 7 days ago by jianzheng934963534 • 0
1
vote
0
answers
88
views
0
answers
Can I improve my de novo assembly with a reference genome?
de novo assembly genome reference pacbio written 16 days ago by cristian • 50
1
vote
0
answers
80
views
0
answers
Error in BLASR 'name in reference not unique'
pacbio alignment blasr error mapping written 16 days ago by cristian • 50
4
votes
1
answer
116
views
1
answer
Canu: failed with exit code 134
canu exit code 134 pacbio failed genome assembly written 17 days ago by cristian • 50
3
votes
2
answers
119
views
2
answers
Pacbio sequencing database
database next-gen whole genome pacbio sequencing written 17 days ago by jerald • 0 • updated 17 days ago by genomax ♦ 29k
0
votes
0
answers
194
views
0
answers
Polishing PacBio assembly : The ideal coverage for higly polymorphic species
polishing busco pacbio genome assembly written 10 weeks ago by Roxane Boyer • 220 • updated 19 days ago by Biostar ♦♦ 20
0
votes
0
answers
77
views
0
answers
Read metadata from a pacbio bam file
R bam pacbio rsamtools sam written 21 days ago by cristian • 50
0
votes
1
answer
93
views
1
answer
use proovread to correct Pacbio reads with Illumina reads
proovread illumina pacbio correction written 22 days ago by shuchen • 10
0
votes
1
answer
130
views
1
answer
[PacBio assembly] Remaining indels after polishing
assembly polishing pacbio quiver written 22 days ago by Roxane Boyer • 220 • updated 22 days ago by Gedankenstuecke • 0
0
votes
0
answers
68
views
0
answers
dextract multi-threadding possible?
dazzler dextract thread pacbio sequencing written 24 days ago by cristian • 50
0
votes
0
answers
88
views
0
answers
fasta2DB command from DAZZ_DB
fasta2db dazzler sequencing pacbio assembly written 24 days ago by cristian • 50
2
votes
0
answers
85
views
0
answers
pacbio db and las files
db file format las pacbio nextgen written 24 days ago by cristian • 50
1
vote
1
answer
696
views
1
answer
Gap-filling and scaffolding using PacBio reads
genome assembly opera-lg pbjelly pacbio written 8 months ago by sjbasu • 0 • updated 5 weeks ago by ant_genome • 0
3
votes
1
answer
98
views
1
answer
How to install DASQV?
dasqv install scrubbing pacbio written 5 weeks ago by cristian • 50 • updated 5 weeks ago by h.mon ♦ 6.6k
0
votes
0
answers
134
views
0
answers
Falcon PacBio Assembler: Assertion Error
genome assembly falcon pacbio written 7 weeks ago by patricia.cockett • 0
0
votes
1
answer
117
views
1
answer
Is there any reason not to run RS_ReadsOfInsert?
genome ccs rsii dna-seq pacbio written 7 weeks ago by conrad.stack • 0 • updated 7 weeks ago by Charles Warden ♦ 4.8k
0
votes
0
answers
103
views
0
answers
PBjelly, PBhoney and SSPACE-LongRead correct order
assembly sspace-longread pbjelly pacbio pbhoney written 8 weeks ago by Ric • 120
0
votes
0
answers
127
views
0
answers
mpileup for PacBio reads
quiver calling pacbio mpileup variants written 9 weeks ago by Biomonika (Noolean) ♦ 2.9k
0
votes
0
answers
172
views
0
answers
Clustering PacBio CCS reads
pacbio clustering written 10 weeks ago by lelle • 690
0
votes
0
answers
138
views
0
answers
Link methylation patterns to restriction enzymes
methylation pacbio written 11 weeks ago by mschmid • 90
0
votes
0
answers
199
views
0
answers
Canu ERROR: File supplied on command line; use -s, -pacbio-raw, -pacbio-corrected, -nanopore-raw, or -nanopore-corrected.
assembly pacbio canu written 11 weeks ago by lbrutscher • 0 • updated 11 weeks ago by genomax ♦ 29k
1
vote
0
answers
181
views
0
answers
Removing contaminations from PacBio reads
assembly fastq pacbio sequencing written 12 weeks ago by Ric • 120
0
votes
1
answer
275
views
1
answer
De novo pacBio genome assembly: How to polish data without quiver?
quiver sequencing polishing pacbio assembly written 3 months ago by Rob • 80 • updated 3 months ago by Alex • 10
0
votes
1
answer
182
views
1
answer
Error correcting PacBio reads prior to alignment with bwa mem
bwa pacbio written 3 months ago by aindap • 100 • updated 3 months ago by Charles Warden ♦ 4.8k
6
votes
1
answer
315
views
1
answer
What can I do after my Pacbio genome assembly ?
pacbio written 3 months ago by Picasa • 290 • updated 3 months ago by Roxane Boyer • 220
0
votes
0
answers
199
views
0
answers
What tools / datasets for long-reads mapping benchmarking ? (MinION or PacBIO)
alignment minion rna-seq pacbio mapping written 3 months ago by Tintest • 0
2
votes
1
answer
325
views
1
answer
finding repeats in de-novo assembled contig from PacBio reads
assembly repeat pacbio written 5 months ago by aindap • 100 • updated 3 months ago by arnstrm • 1.5k
0
votes
0
answers
197
views
0
answers
Does the PacBio Reads only contain positive (+) strand?
ngs pacbio written 3 months ago by BioGeek • 80
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