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<prev • 163 results • page 1 of 6 • next >
6
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0
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820
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Any state of the art tool for reads generation from reference sequence?
illumina reads generation pacbio reads simulation written 2.2 years ago by Alex • 1.4k
21
votes
2
answers
2.9k
views
15 follow
2
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Tutorial: Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone
pbalign tutorial polishing pacbio arrow smrt limk written 9 months ago by Roxane Boyer • 560 • updated 4 months ago by elipow1 • 0
9
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0
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858
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5 follow
0
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Tool: NanoPack: Scripts for long read sequencing data processing and analysis: NanoPlot, NanoFilt, NanoStat, NanoLyse, NanoComp
long reads tool pacbio oxford nanopore written 9 months ago by WouterDeCoster ♦ 29k
2
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1
answer
3.4k
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1
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PacBio Long Read error correction through PBcR --> pacbio.spec field
errorcorrection celera pacbio longreads written 3.7 years ago by auroramaurizio1 • 20 • updated 3.6 years ago by geek_y ♦ 8.6k
4
votes
1
answer
1.5k
views
1
answer
de novo hybrid assembly of transcriptome - Illumina PE and PacBio Full-length reads
latest illumina pacbio rna-seq assembly written 2.7 years ago by Bade • 20
1
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1
answer
1.5k
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1
answer
Principled structural variation detection with assembled genomes or pacbio reads
genome assembly smrt structural-variation pacbio written 2.6 years ago by hbw • 70 • updated 6 months ago by Biostar ♦♦ 20
6
votes
1
answer
766
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1
answer
PacBio reads mapping statistics abnormaly high
mapping pacbio written 2.2 years ago by alexis.groppi • 20 • updated 2.2 years ago by WouterDeCoster ♦ 29k
4
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2
answers
934
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2
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Semi global (end gap free) alignment of long reads?
alignment pacbio written 2.2 years ago by rrwick • 20
3
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0
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1.5k
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6 follow
0
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Why we need 100X coverage to get a high-quality assembly?
genome assembly coverage pacbio written 18 months ago by lamz138138 • 10
3
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0
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934
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0
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PacBio genome assembly with canu shorter than expected
genome assembly pacbio canu written 17 months ago by Rob • 90
11
votes
1
answer
1.3k
views
6 follow
1
answer
What can I do after my Pacbio genome assembly ?
pacbio written 15 months ago by Picasa • 350 • updated 15 months ago by Roxane Boyer • 560
1
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0
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808
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7 follow
0
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Canu ERROR: File supplied on command line; use -s, -pacbio-raw, -pacbio-corrected, -nanopore-raw, or -nanopore-corrected.
assembly pacbio canu written 14 months ago by lbrutscher • 10 • updated 9 months ago by knudnornielsen • 0
3
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2
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853
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9 follow
2
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Assembling PacBio reads using a reference genome
assembly resequencing reference pacbio written 11 months ago by celeste • 20 • updated 10 months ago by tjduncan • 160
2
votes
1
answer
141
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7 follow
1
answer
Decision on no. and type of libraries to be generated for plant genome assembly
genome assembly library pacbio illumina written 4 weeks ago by MSM55 • 70
4
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2
answers
3.1k
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2
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ERROR while using PBcR
assembly pacbio sequencing written 4.0 years ago by Medhat • 7.6k • updated 4.0 years ago by Charles Warden ♦ 5.0k
2
votes
1
answer
1.7k
views
1
answer
Pacbio: How to generate Unitigs.fa for ECTools correst.sh ?
assembly pacbio ectools written 4.0 years ago by geek_y ♦ 8.6k • updated 4.0 years ago by richard.james.hall • 20
1
vote
1
answer
1.7k
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1
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What do you use to generates summary statistics of sequence and quality data for PacBio?
genome assembly next-gen pacbio sequence written 3.9 years ago by Medhat • 7.6k • updated 3.9 years ago by Biomonika (Noolean) ♦ 3.0k
2
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0
answers
2.3k
views
0
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BWA_MEM on PacBio Reads
bwa-mem pacbio written 3.8 years ago by auroramaurizio1 • 20
2
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1
answer
2.4k
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1
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How PacBio quality is calculated?
alignment pacbio sequencing written 3.7 years ago by Medhat • 7.6k • updated 3.7 years ago by rhall • 160
3
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1
answer
1.4k
views
1
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Looking for a bam file with aligned (error corrected) PacBio reads
bam pacbio written 3.7 years ago by William • 4.2k • updated 3.7 years ago by Coryza • 360
3
votes
3
answers
1.9k
views
3
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PacBio Technology Assemblers
assembly long reads pacbio written 3.7 years ago by midox • 190 • updated 18 months ago by Picasa • 350
2
votes
3
answers
2.2k
views
3
answers
aligner for CORRECTED pacbio long reads
reads pacbio align longreads sequencing written 3.4 years ago by cmo • 30 • updated 17 months ago by Felix Francis • 440
8
votes
4
answers
7.2k
views
6 follow
4
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Pacbio: extract fastq from h5 file based on quality filtering
assembly hgap long reads celera pacbio written 3.4 years ago by merodev • 70 • updated 19 months ago by mehmetgoktay1989 • 0
0
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0
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1.4k
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0
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PacBio transcriptome and gene annotation
genes maker pacbio transcriptome written 3.4 years ago by Alex • 1.4k • updated 3.3 years ago by Biostar ♦♦ 20
1
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0
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1.1k
views
0
answers
Forum: PacBio Library Prep workshop and PacBio SMART-Portal bootcamp - UC Davis - April 2015
genome assembly forum pacbio sequencing written 3.3 years ago by DNATECH • 10
1
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0
answers
903
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0
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recognize known isoform from transcript mapping
alignment isoform pacbio written 3.3 years ago by ghbore • 0 • updated 9 months ago by Biostar ♦♦ 20
1
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1
answer
1.0k
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1
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PBcR using less than 25X for error correction in PacBIo
pacbio pbcr error error-correction written 3.3 years ago by merodev • 70 • updated 3.2 years ago by orange • 30
0
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1
answer
1.0k
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1
answer
Pacbio Circularizing and trimming error
pacbio written 3.2 years ago by HG • 1.1k • updated 3.2 years ago by k.mamoud • 10
3
votes
1
answer
1.5k
views
1
answer
Ideal coverage required for PacBio error correction using HGAP
illumina hgap error correction pacbio written 3.2 years ago by Felix Francis • 440
6
votes
1
answer
2.8k
views
1
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PacBio coverage question for a plant genome
assembly coverage pacbio written 3.1 years ago by arnstrm • 1.6k • updated 3.1 years ago by thackl • 2.5k
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