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Recent Replies
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C: T-BioInfo - an intuitive interface for complex bioinformatics tasks by
genomax ♦ 49k
Those video links are not properly posted.
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C: Help interpreting Stringtie 'fully covered transcripts' output by
h.mon ♦ 15k
Seems different exons of the same transcript.
-
C: Filtering rRNA from RNAseq data by
rsafavi • 0
Thank you, I will try that
-
A: Please suggest an appropriate genome-guided transcriptome assembler by
Kevin Blighe ♦ 21k
The one tool that is no longer recommended (even by the developers of the program) is TopHat / To...
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A: Filtering rRNA from RNAseq data by
igor ♦ 6.2k
There are some related suggestions in this previous thread: https://www.biostars.org/p/207311/
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C: Generating network from gene expression of a cancer cell line by
Kevin Blighe ♦ 21k
As many samples as you can find, I believe. Derermining 'power' in expression studies is difficul...
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A: Filtering rRNA from RNAseq data by
genomax ♦ 49k
You can find the mouse rDNA repeat unit [sequence here][1]. You can then use `bbsplit.sh` from BB...
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A: Find the genomic position of CTCF binding site on DMPK gene by
manuel.belmadani • 30
It seems like the initial report of those flanking CTCF sites are from this [paper][1]: "Recent...
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C: Making Scaffolds From Contigs Without Paired Read Information by
mariaveronicafumero • 0
any software to do this? (scaffolding from paired-end reads and contigs, no mate-pairs) thanks!
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A: Find the genomic position of CTCF binding site on DMPK gene by
Alex Reynolds ♦ 24k
Another option is to use CTCF calls for `hg38` from analysis done by [Matt Maurano's lab][1] for ...
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C: Confused about merging RNA-seq lanes/runs by
genomax ♦ 49k
One library is one prep done from a sample aliquot. One can make multiple libraries from a sample...
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C: data pre-processing for WGCNA Algorithm by
Kevin Blighe ♦ 21k
So, you have ENSEMBL gene names (begin with '*ENSG*') and you nee to convert these to HGNC / Offi...
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