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GSEA For Paired Microarray Data

enrichment paired pair matched gsea written 5.8 years ago by dompearcejankowski • 10 • updated 5.1 years ago by Gordon Smyth • 2.1k

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How To Set A Threshold On Selecting Gene Pairs

gene pair threshold written 6.6 years ago by txd866 • 0 • updated 6.6 years ago by Ashutosh Pandey ♦ 12k

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Recent Replies

C: Annotating two columns at the same time by rpolicastro ♦ 3.2k
Can you include some example data, and an example of what you want the output to look like?
C: Error :[[<- defined for objects of type "S4" only for subclasses of environment by rpolicastro ♦ 3.2k
Is your Seurat data being properly loaded into the Shiny app on the remote system?
C: Sequence Duplication Levels and Clumpify by GenoMax ♦ 94k
Sequence duplicates can arise by a couple of different ways. By PCR amplification (can only be id...
C: Non-uniform p-value histogram in differential analysis by Jean-Karim Heriche ♦ 24k
As suggested in the linked article, the likely reason is violation of the assumptions of the stat...
C: Non-uniform p-value histogram in differential analysis by rpolicastro ♦ 3.2k
If your p-value distribution does look like D in that article, there might be something wrong wit...
C: Annotating two columns at the same time by Dunois • 490
Could you please illustrate what you'd like to do with some example data (and the expected output)?
C: Problems with FDR in RNA-seq analysis by rpolicastro ♦ 3.2k
From looking at the histogram I wouldn't expect a large number of significant values, but it's li...
C: Expression thresholds for enrichment analysis of RNA-Seq data by Papyrus • 620
Yes I understand, although in my opinion this kind of approach seems to me to be more typical of ...
C: Error in Blast+ by lieven.sterck ♦ 9.5k
check the memory usage. This error might be linked to the memory usage? what are the specs of you...
C: Using Deseq2 for RNA-seq analysis of 4 different groups of cells by Carlo Yague ♦ 5.5k
I suggest that you start with this excellent [DESeq2 tutorial][1]. My suggestions above will fit ...
C: Annotating two columns at the same time by Mozart • 240
apologies for not making this clear. I have peptide ids and want to convert these into protein na...
C: Error in Blast+ by JC ♦ 12k
>Could you please help me in this? unfortunately no, the error is clearly showing your job c...

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