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Infer experiment - Failed to determine strandin paired end stranded RNA-seq
hisat2 paired end star rna-seq stranded written 15 days ago by GiusiG • 0
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Running STAR aligner on paired-end reads as single-end read
single end paired end star align rna-seq written 4 months ago by Glory Basumata • 10 • updated 4 months ago by h.mon ♦ 21k
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Problem for separating reverse and forward reading in my RNA-seq
paired end rna-seq sequencing written 5 months ago by modarzi • 60
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bowtie2 paired end insertion length
bowtie2 ngs alignment paired end written 5 months ago by jesselee516 • 70 • updated 5 months ago by d-cameron • 1.9k
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How can overlap with paired end sequence??
cigar paired end alignment tablet written 8 months ago by 2012secondseason • 10 • updated 8 months ago by d-cameron • 1.9k
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kmergenie input forward and reverse reads
kmergenie paired end kmer written 11 months ago by deepti1rao • 20 • updated 9 months ago by Biostar ♦♦ 20
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Why mate-Paired end, Paired-end and Single End reads library to be combined for assembling?
assembly paired end mate-pair single end written 2.1 years ago by saranpons3 • 50 • updated 11 months ago by Biostar ♦♦ 20
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Replacing Illumina index in header of reads
headers next-gen paired end sequencing written 12 months ago by john.soghigian • 0
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What is the orientation of the sequences in illumina paired end output file?
illumina next-gen paired end written 12 months ago by Shanika • 0
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how to find the amplified region from aln.bam file
amplicon paired end mi-seq written 12 months ago by trisha • 10
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Dereplication step leads to increased file size
wgs metagenomics paired end qc written 16 months ago by aditijangid66 • 0 • updated 14 months ago by RamRS ♦ 19k
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What kind of advantage does PEAR bring?
paired end pear single end written 14 months ago by CY • 270 • updated 14 months ago by h.mon ♦ 21k
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Is there any software that can highlight or show the paired end reads within .sam file?
genome highlight paired end mapping sam written 16 months ago by allenyang2003 • 0 • updated 16 months ago by Dan D ♦ 6.6k
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joining paired end illumina data for metagenomic analysis
illumina 16s paired end metagenome qiime written 19 months ago by cvu • 120
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splitting fastq files output size issue
trinity fastq paired end written 2.1 years ago by adrilu.romero • 0
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Determining Paired-end or Mate-pair insert length in De Novo Sequencing
de novo paired end mate pair written 2.3 years ago by sameedmsiddiqui • 0 • updated 2.3 years ago by Charles Plessy • 2.6k
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New isoform discovery with paired end reads across different exons
paired end rna-seq isoform written 2.4 years ago by thomasterTW • 20 • updated 2.4 years ago by EagleEye ♦ 6.0k
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Trim Galore Bug?
trim galore paired end written 2.4 years ago by datascientist28 • 350 • updated 2.4 years ago by dariober ♦ 9.7k
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What is the default output format of current gen sequencing machine?
sequencing output format paired end single end written 2.4 years ago by Jenez • 510
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Paired end alignment issue
paired end tophat alignment bowtie sequencing written 2.6 years ago by aj123 • 70 • updated 2.6 years ago by Antonio R. Franco • 3.9k
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paired end illumina reads
assembly paired end written 3.1 years ago by midox • 200 • updated 2.8 years ago by jomo018 • 450
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Overlapping paired end read simulator
simulator ngs paired end illumina metasim written 3.0 years ago by eheizer31 • 0 • updated 3.0 years ago by Brian Bushnell ♦ 16k
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Average insert size of PE library based on the bioanalyzer results
average insert size paired end rna-seq bioanalyzer written 3.1 years ago by seta • 1.1k • updated 3.1 years ago by h.mon ♦ 21k
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reverse complement in Assembly!
assembly paired paired end written 3.1 years ago by midox • 200
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Illumina PE - what are causes for coverage drops?
illumina paired end coverage written 3.2 years ago by mschmid • 90 • updated 3.2 years ago by thackl • 2.6k
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DiscoSNP 2.2.0 paired end reads
discosnp paired end written 3.3 years ago by tkitapci • 60 • updated 3.3 years ago by pierre.peterlongo • 830
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Nice open source alternative to "contig viewer" in SeqMan Pro
seqman contig paired end written 3.3 years ago by mschmid • 90 • updated 3.3 years ago by Lesley Sitter • 450
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paired end quality filtering
illumina fastq paired end filter written 3.3 years ago by sun.nation • 120 • updated 3.3 years ago by h.mon ♦ 21k
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Automating Paired End mating
assembly automation paired end illumina written 4.0 years ago by Furor • 40 • updated 4.0 years ago by marina.v.yurieva • 470
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Roche 454: How to know if reads are paired ?
paired-end paired end 454 fastq hts written 4.3 years ago by pastatonio78 • 20 • updated 4.3 years ago by rtliu • 2.0k
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