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<prev • 36 results • page 1 of 2 • next >
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Confused about read pair orientation in bam
alignment paired end bwa bam written 4 months ago by malthesr • 10
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5 follow
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Infer experiment - Failed to determine strandin paired end stranded RNA-seq
hisat2 paired end star rna-seq stranded written 10 months ago by GiusiG • 0 • updated 6 months ago by zoegward • 70
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Hisat2 -Can it align paired readfiles, and unpaired read files leftover from trimming/QC simultaneously?
alignment paired end rna-seq hisat2 written 8 months ago by RNAseqer • 110 • updated 8 months ago by h.mon ♦ 27k
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Extract reads based on pair orientation
paired end read pair sam bam orientation written 8 months ago by Emilie • 0
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Running STAR aligner on paired-end reads as single-end read
single end paired end star align rna-seq written 14 months ago by Glory Basumata • 140 • updated 14 months ago by h.mon ♦ 27k
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Problem for separating reverse and forward reading in my RNA-seq
paired end rna-seq sequencing written 15 months ago by modarzi • 80
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bowtie2 paired end insertion length
bowtie2 ngs alignment paired end written 16 months ago by jesselee516 • 100 • updated 16 months ago by d-cameron • 2.1k
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How can overlap with paired end sequence??
cigar paired end alignment tablet written 18 months ago by 2012secondseason • 20 • updated 18 months ago by d-cameron • 2.1k
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kmergenie input forward and reverse reads
kmergenie paired end kmer written 21 months ago by deepti1rao • 20 • updated 19 months ago by Biostar ♦♦ 20
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Why mate-Paired end, Paired-end and Single End reads library to be combined for assembling?
assembly paired end mate-pair single end written 3.0 years ago by saranpons3 • 70 • updated 21 months ago by Biostar ♦♦ 20
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Replacing Illumina index in header of reads
headers next-gen paired end sequencing written 22 months ago by john.soghigian • 0
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What is the orientation of the sequences in illumina paired end output file?
illumina next-gen paired end written 22 months ago by Shanika • 0
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how to find the amplified region from aln.bam file
amplicon paired end mi-seq written 23 months ago by trisha • 10
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Dereplication step leads to increased file size
wgs metagenomics paired end qc written 2.2 years ago by aditijangid66 • 0 • updated 2.1 years ago by RamRS ♦ 24k
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What kind of advantage does PEAR bring?
paired end pear single end written 2.1 years ago by CY • 410 • updated 2.1 years ago by h.mon ♦ 27k
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Is there any software that can highlight or show the paired end reads within .sam file?
genome highlight paired end mapping sam written 2.2 years ago by allenyang2003 • 0 • updated 2.2 years ago by Dan D ♦ 6.8k
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joining paired end illumina data for metagenomic analysis
illumina 16s paired end metagenome qiime written 2.4 years ago by cvu • 140
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splitting fastq files output size issue
trinity fastq paired end written 3.0 years ago by adrilu.romero • 0
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Determining Paired-end or Mate-pair insert length in De Novo Sequencing
de novo paired end mate pair written 3.1 years ago by sameedmsiddiqui • 0 • updated 3.1 years ago by Charles Plessy • 2.7k
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New isoform discovery with paired end reads across different exons
paired end rna-seq isoform written 3.3 years ago by thomasterTW • 20 • updated 3.3 years ago by EagleEye ♦ 6.5k
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Trim Galore Bug?
trim galore paired end written 3.3 years ago by datascientist28 • 400 • updated 3.3 years ago by dariober ♦ 10k
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What is the default output format of current gen sequencing machine?
sequencing output format paired end single end written 3.3 years ago by Jenez • 520
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Paired end alignment issue
paired end tophat alignment bowtie sequencing written 3.4 years ago by aj123 • 80 • updated 3.4 years ago by Antonio R. Franco • 4.1k
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paired end illumina reads
assembly paired end written 4.0 years ago by midox • 230 • updated 3.6 years ago by jomo018 • 480
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Overlapping paired end read simulator
simulator ngs paired end illumina metasim written 3.9 years ago by eheizer31 • 0 • updated 3.9 years ago by Brian Bushnell ♦ 16k
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Average insert size of PE library based on the bioanalyzer results
average insert size paired end rna-seq bioanalyzer written 4.0 years ago by seta • 1.2k • updated 4.0 years ago by h.mon ♦ 27k
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3
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reverse complement in Assembly!
assembly paired paired end written 4.0 years ago by midox • 230
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Illumina PE - what are causes for coverage drops?
illumina paired end coverage written 4.0 years ago by mschmid • 90 • updated 4.0 years ago by thackl • 2.7k
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DiscoSNP 2.2.0 paired end reads
discosnp paired end written 4.1 years ago by tkitapci • 60 • updated 4.1 years ago by pierre.peterlongo • 840
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Nice open source alternative to "contig viewer" in SeqMan Pro
seqman contig paired end written 4.1 years ago by mschmid • 90 • updated 4.1 years ago by Lesley Sitter • 460
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