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<prev • 39 results • page 1 of 2 • next >
2
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3
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59
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3
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Read detection with pattern in paired end FASTQ file
fastq paired end awk written 5 days ago by amitpande74 • 10 • updated 5 days ago by GenoMax ♦ 94k
2
votes
2
answers
242
views
2
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Does BWA MEM understand paired-end suffixes? /2 in a single FASTQ file?
fastq paired end bwa written 6 months ago by tech • 0 • updated 6 months ago by i.sudbery ♦ 10k
0
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1
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2.5k
views
1
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Automating Paired End mating
assembly automation paired end illumina written 6.1 years ago by Furor • 40 • updated 6 months ago by Biostar ♦♦ 20
0
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1
answer
505
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1
answer
Paired end for minia
paired end minia written 12 months ago by alois.regl • 0 • updated 12 months ago by h.mon ♦ 32k
1
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0
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862
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0
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Confused about read pair orientation in bam
alignment paired end bwa bam written 20 months ago by malthesr • 20
2
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1
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1.1k
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5 follow
1
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Infer experiment - Failed to determine strandin paired end stranded RNA-seq
hisat2 paired end star rna-seq stranded written 2.1 years ago by GiusiG • 10 • updated 21 months ago by zoegward • 100
0
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0
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1.1k
views
0
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Hisat2 -Can it align paired readfiles, and unpaired read files leftover from trimming/QC simultaneously?
alignment paired end rna-seq hisat2 written 23 months ago by RNAseqer • 140 • updated 23 months ago by h.mon ♦ 32k
0
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0
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842
views
0
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Extract reads based on pair orientation
paired end read pair sam bam orientation written 23 months ago by Emilie • 0
10
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1
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8.1k
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1
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Running STAR aligner on paired-end reads as single-end read
single end paired end star align rna-seq written 2.4 years ago by Glory Basumata • 140 • updated 2.4 years ago by h.mon ♦ 32k
1
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0
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526
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0
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Problem for separating reverse and forward reading in my RNA-seq
paired end rna-seq sequencing written 2.6 years ago by modarzi • 140
3
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1
answer
1.5k
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1
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bowtie2 paired end insertion length
bowtie2 ngs alignment paired end written 2.6 years ago by jesselee516 • 100 • updated 2.6 years ago by d-cameron • 2.3k
4
votes
1
answer
719
views
1
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How can overlap with paired end sequence??
cigar paired end alignment tablet written 2.8 years ago by 2012secondseason • 30 • updated 2.8 years ago by d-cameron • 2.3k
0
votes
0
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738
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0
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kmergenie input forward and reverse reads
kmergenie paired end kmer written 3.0 years ago by deepti1rao • 30 • updated 2.9 years ago by Biostar ♦♦ 20
16
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2
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3.3k
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2
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Why mate-Paired end, Paired-end and Single End reads library to be combined for assembling?
assembly paired end mate-pair single end written 4.2 years ago by saranpons3 • 70 • updated 3.1 years ago by Biostar ♦♦ 20
0
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0
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1.8k
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0
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Replacing Illumina index in header of reads
headers next-gen paired end sequencing written 3.1 years ago by john.soghigian • 0
1
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0
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1.6k
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0
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What is the orientation of the sequences in illumina paired end output file?
illumina next-gen paired end written 3.2 years ago by Shanika • 0
0
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0
answers
906
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0
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how to find the amplified region from aln.bam file
amplicon paired end mi-seq written 3.2 years ago by trisha • 10
3
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0
answers
780
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0
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Dereplication step leads to increased file size
wgs metagenomics paired end qc written 3.5 years ago by aditijangid66 • 0 • updated 3.3 years ago by _r_am ♦ 32k
3
votes
1
answer
1.3k
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1
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What kind of advantage does PEAR bring?
paired end pear single end written 3.3 years ago by CY • 550 • updated 3.3 years ago by h.mon ♦ 32k
2
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2
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925
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2
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Is there any software that can highlight or show the paired end reads within .sam file?
genome highlight paired end mapping sam written 3.5 years ago by allenyang2003 • 0 • updated 3.5 years ago by Dan D ♦ 7.1k
2
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0
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2.0k
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0
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joining paired end illumina data for metagenomic analysis
illumina 16s paired end metagenome qiime written 3.7 years ago by cvu • 170
1
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0
answers
1.4k
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0
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splitting fastq files output size issue
trinity fastq paired end written 4.2 years ago by adrilu.romero • 0
1
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3
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1.8k
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3
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Determining Paired-end or Mate-pair insert length in De Novo Sequencing
de novo paired end mate pair written 4.4 years ago by sameedmsiddiqui • 0 • updated 4.4 years ago by Charles Plessy • 2.7k
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2
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1.1k
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2
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New isoform discovery with paired end reads across different exons
paired end rna-seq isoform written 4.5 years ago by thomasterTW • 20 • updated 4.5 years ago by EagleEye ♦ 6.7k
3
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1
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3.8k
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1
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Trim Galore Bug?
trim galore paired end written 4.5 years ago by datascientist28 • 470 • updated 4.5 years ago by dariober ♦ 11k
4
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1
answer
1.1k
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1
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What is the default output format of current gen sequencing machine?
sequencing output format paired end single end written 4.5 years ago by Jenez • 530
7
votes
1
answer
1.1k
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1
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Paired end alignment issue
paired end tophat alignment bowtie sequencing written 4.7 years ago by aj123 • 80 • updated 4.7 years ago by Antonio R. Franco • 4.5k
16
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6
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6.4k
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6
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paired end illumina reads
assembly paired end written 5.2 years ago by midox • 260 • updated 4.9 years ago by jomo018 • 610
2
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1
answer
1.4k
views
1
answer
Overlapping paired end read simulator
simulator ngs paired end illumina metasim written 5.1 years ago by eheizer31 • 0 • updated 5.1 years ago by Brian Bushnell ♦ 17k
1
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1
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2.0k
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1
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Average insert size of PE library based on the bioanalyzer results
average insert size paired end rna-seq bioanalyzer written 5.2 years ago by seta • 1.4k • updated 5.2 years ago by h.mon ♦ 32k
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