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<prev • 38 results • page 1 of 2 • next >
2
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2
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125
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2
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Does BWA MEM understand paired-end suffixes? /2 in a single FASTQ file?
fastq paired end bwa written 4 weeks ago by tech • 0 • updated 4 weeks ago by i.sudbery ♦ 8.4k
0
votes
1
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2.3k
views
1
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Automating Paired End mating
assembly automation paired end illumina written 5.6 years ago by Furor • 40 • updated 5 weeks ago by Biostar ♦♦ 20
0
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1
answer
382
views
1
answer
Paired end for minia
paired end minia written 7 months ago by alois.regl • 0 • updated 7 months ago by h.mon ♦ 30k
1
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0
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607
views
0
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Confused about read pair orientation in bam
alignment paired end bwa bam written 14 months ago by malthesr • 20
2
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1
answer
874
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5 follow
1
answer
Infer experiment - Failed to determine strandin paired end stranded RNA-seq
hisat2 paired end star rna-seq stranded written 20 months ago by GiusiG • 0 • updated 15 months ago by zoegward • 100
0
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0
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827
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0
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Hisat2 -Can it align paired readfiles, and unpaired read files leftover from trimming/QC simultaneously?
alignment paired end rna-seq hisat2 written 18 months ago by RNAseqer • 130 • updated 18 months ago by h.mon ♦ 30k
0
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0
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666
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0
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Extract reads based on pair orientation
paired end read pair sam bam orientation written 18 months ago by Emilie • 0
10
votes
1
answer
6.5k
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1
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Running STAR aligner on paired-end reads as single-end read
single end paired end star align rna-seq written 2.0 years ago by Glory Basumata • 140 • updated 2.0 years ago by h.mon ♦ 30k
1
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0
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465
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0
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Problem for separating reverse and forward reading in my RNA-seq
paired end rna-seq sequencing written 2.1 years ago by modarzi • 120
3
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1
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1.3k
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1
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bowtie2 paired end insertion length
bowtie2 ngs alignment paired end written 2.1 years ago by jesselee516 • 100 • updated 2.1 years ago by d-cameron • 2.2k
4
votes
1
answer
613
views
1
answer
How can overlap with paired end sequence??
cigar paired end alignment tablet written 2.4 years ago by 2012secondseason • 20 • updated 2.4 years ago by d-cameron • 2.2k
0
votes
0
answers
654
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0
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kmergenie input forward and reverse reads
kmergenie paired end kmer written 2.6 years ago by deepti1rao • 30 • updated 2.5 years ago by Biostar ♦♦ 20
16
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2
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3.0k
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2
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Why mate-Paired end, Paired-end and Single End reads library to be combined for assembling?
assembly paired end mate-pair single end written 3.8 years ago by saranpons3 • 70 • updated 2.6 years ago by Biostar ♦♦ 20
0
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0
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1.5k
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0
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Replacing Illumina index in header of reads
headers next-gen paired end sequencing written 2.7 years ago by john.soghigian • 0
1
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0
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1.4k
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0
answers
What is the orientation of the sequences in illumina paired end output file?
illumina next-gen paired end written 2.7 years ago by Shanika • 0
0
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0
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823
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0
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how to find the amplified region from aln.bam file
amplicon paired end mi-seq written 2.7 years ago by trisha • 10
3
votes
0
answers
738
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0
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Dereplication step leads to increased file size
wgs metagenomics paired end qc written 3.0 years ago by aditijangid66 • 0 • updated 2.9 years ago by RamRS ♦ 28k
3
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1
answer
1.2k
views
1
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What kind of advantage does PEAR bring?
paired end pear single end written 2.9 years ago by CY • 510 • updated 2.9 years ago by h.mon ♦ 30k
2
votes
2
answers
872
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2
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Is there any software that can highlight or show the paired end reads within .sam file?
genome highlight paired end mapping sam written 3.0 years ago by allenyang2003 • 0 • updated 3.0 years ago by Dan D ♦ 7.1k
2
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0
answers
1.9k
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0
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joining paired end illumina data for metagenomic analysis
illumina 16s paired end metagenome qiime written 3.2 years ago by cvu • 150
1
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0
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1.3k
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0
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splitting fastq files output size issue
trinity fastq paired end written 3.8 years ago by adrilu.romero • 0
1
vote
3
answers
1.6k
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3
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Determining Paired-end or Mate-pair insert length in De Novo Sequencing
de novo paired end mate pair written 4.0 years ago by sameedmsiddiqui • 0 • updated 3.9 years ago by Charles Plessy • 2.7k
0
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2
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1.0k
views
2
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New isoform discovery with paired end reads across different exons
paired end rna-seq isoform written 4.1 years ago by thomasterTW • 20 • updated 4.1 years ago by EagleEye ♦ 6.6k
3
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1
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3.6k
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1
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Trim Galore Bug?
trim galore paired end written 4.1 years ago by datascientist28 • 450 • updated 4.1 years ago by dariober ♦ 11k
4
votes
1
answer
993
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1
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What is the default output format of current gen sequencing machine?
sequencing output format paired end single end written 4.1 years ago by Jenez • 520
7
votes
1
answer
1.0k
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1
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Paired end alignment issue
paired end tophat alignment bowtie sequencing written 4.2 years ago by aj123 • 70 • updated 4.2 years ago by Antonio R. Franco • 4.5k
16
votes
6
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5.8k
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6
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paired end illumina reads
assembly paired end written 4.8 years ago by midox • 260 • updated 4.5 years ago by jomo018 • 610
2
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1
answer
1.3k
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1
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Overlapping paired end read simulator
simulator ngs paired end illumina metasim written 4.7 years ago by eheizer31 • 0 • updated 4.7 years ago by Brian Bushnell ♦ 17k
1
vote
1
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1.8k
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1
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Average insert size of PE library based on the bioanalyzer results
average insert size paired end rna-seq bioanalyzer written 4.8 years ago by seta • 1.3k • updated 4.8 years ago by h.mon ♦ 30k
2
votes
3
answers
2.8k
views
3
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reverse complement in Assembly!
assembly paired paired end written 4.8 years ago by midox • 260
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