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<prev • 179 results • page 1 of 6 • next >
8
votes
3
answers
5.6k
views
3
answers
Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
paired-end chip-seq normalisation written 4.0 years ago by James Ashmore • 2.6k • updated 10 days ago by Biostar ♦♦ 20
6
votes
5
answers
4.4k
views
7 follow
5
answers
Collect Read Pairs Where At Least One Read Is Mapped
paired-end samtools sam written 5.7 years ago by fridhackery • 140 • updated 10 days ago by ying.kev • 0
8
votes
2
answers
2.9k
views
2
answers
TrimGalore! on multiple paired fastq files
paired-end script rna-seq trimgalore! written 2.4 years ago by emblake • 50 • updated 17 days ago by rogangrant2022 • 10
0
votes
0
answers
119
views
0
answers
Getting unmapped paired-end reads as fastq from unmapped.bam obtained with tophat2
alignment paired-end tophat2 rna-seq written 4 weeks ago by cris.kgs • 0
3
votes
2
answers
1.8k
views
2
answers
Does The Mapping Of A Read'S Pair Affect Its Own Mapping Score In Bwa?
paired-end mapping bwa written 5.1 years ago by jhrf • 10 • updated 6 weeks ago by Biostar ♦♦ 20
1
vote
0
answers
437
views
0
answers
java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
outofmemoryerror xmx paired-end bbmap repair.sh written 6 weeks ago by mb2subi • 0
0
votes
1
answer
197
views
1
answer
Problem mapping paired-end Illumina reads
paired-end alignment chip-seq written 6 weeks ago by biostart • 280 • updated 6 weeks ago by swbarnes2 ♦ 4.8k
0
votes
0
answers
146
views
0
answers
How to generate bigwig file from paired end reads that overlap
paired-end clip bigwig rna-seq small rnas written 3 months ago by racrna • 0
1
vote
1
answer
210
views
1
answer
BBMAP paired end alignment problem
paired-end bbmap align written 3 months ago by mark.rose • 30 • updated 3 months ago by h.mon ♦ 23k
1
vote
2
answers
2.8k
views
2
answers
How do I configure the read name output from STAR?
paired-end picard chip-seq star written 3.9 years ago by jgbradley1 • 90 • updated 4 months ago by RamRS ♦ 20k
2
votes
3
answers
525
views
6 follow
3
answers
Trim Paired-end Fastq Files
trimmomatic paired-end rna-seq written 7 months ago by yuabrahamliu • 40 • updated 7 months ago by h.mon ♦ 23k
1
vote
1
answer
368
views
1
answer
unmapped reads in paired-end run pf bowtie2
paired-end bowtie unmapped-reads written 8 months ago by Assa Yeroslaviz • 1.1k • updated 8 months ago by Devon Ryan ♦ 88k
0
votes
0
answers
236
views
0
answers
merge aligned read pairs that overlap - keep the bases that match the reference
illumina paired-end written 8 months ago by Richard • 550
2
votes
2
answers
6.6k
views
6 follow
2
answers
Merging Illumina Paired End Reads
illumina paired-end merge written 5.6 years ago by vijay • 1.4k • updated 8 months ago by Biostar ♦♦ 20
0
votes
0
answers
410
views
0
answers
Trying to get consensus sequence from paired end alignment
paired-end alignment samtools bwa written 9 months ago by Sus • 0
2
votes
2
answers
2.5k
views
2
answers
Some explanation about what a paired-end sequencing really means
paired-end alignment written 9 months ago by Sus • 0 • updated 9 months ago by andrew.j.skelton73 ♦ 5.5k
0
votes
1
answer
669
views
1
answer
Peak calling with MACS for paired end DNase-seq data
macs2 paired-end dna-seq bwa written 9 months ago by Bioinformatist Newbie • 230 • updated 9 months ago by igor ♦ 7.3k
0
votes
0
answers
246
views
0
answers
Multiple global sequence alignment of paired end reads
assembly paired-end alignment tool dna written 9 months ago by mhkt19 • 0
3
votes
2
answers
2.8k
views
2
answers
Identifying discordantly mapped reads
paired-end bam samtools written 3.3 years ago by Linda • 150 • updated 11 months ago by Pierre Lindenbaum ♦ 117k
3
votes
2
answers
851
views
2
answers
Different coverage on RNA-Seq strands
paired-end rna-seq stranded written 16 months ago by rodri • 10 • updated 11 months ago by Mike • 30
3
votes
1
answer
425
views
1
answer
alignment score and other values for the whole paired-end alignment (with overlap)
bowtie2 paired-end alignment sam scores written 11 months ago by shim • 10 • updated 11 months ago by Devon Ryan ♦ 88k
0
votes
0
answers
526
views
0
answers
bbmap paired-end alignment problem
paired-end bbmap align written 11 months ago by mark.rose • 30
3
votes
2
answers
2.0k
views
5 follow
2
answers
cutadapt loop and paired-end reads
paired-end cutadapt loop rna-seq bash written 21 months ago by sbrown669 • 20 • updated 12 months ago by montoya.oscar • 50
17
votes
4
answers
8.5k
views
4
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 2.8 years ago by chefarov • 120 • updated 12 months ago by Stephane Plaisance • 380
0
votes
0
answers
303
views
0
answers
MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 12 months ago by ChIP-seeker • 0
0
votes
3
answers
1.5k
views
3
answers
abyss-pe reading files endlessly with se command added
assembly paired-end miseq abyss written 2.9 years ago by pepijn.kooij • 0 • updated 12 months ago by Biostar ♦♦ 20
4
votes
1
answer
510
views
1
answer
Sub_sampling Paired_end reads in Fastq.gz format.
paired-end rna-seq written 13 months ago by XBria • 50 • updated 13 months ago by Macspider • 2.8k
2
votes
4
answers
492
views
4
answers
denovo assembly combining multiple data sets
illumina paired-end denovo single-end iontorrent written 13 months ago by slimane.khayi • 40
2
votes
1
answer
1.7k
views
1
answer
Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic paired-end written 14 months ago by dllopezr • 40 • updated 14 months ago by Carlo Yague • 4.4k
0
votes
0
answers
736
views
0
answers
Paired end reads merged to single end for mapping - should i allow multi-overlap similar to paired end reads?
multi-overlap paired-end featurecounts single-end written 15 months ago by devikaparvathy • 20
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