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<prev • 198 results • page 1 of 7 • next >
3
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1
answer
100
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1
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bcl2fastq results in Poly-N in R1
scrna-seq single-cell paired-end bcl2fastq rna-seq written 5 weeks ago by Assa Yeroslaviz • 1.3k • updated 5 weeks ago by genomax ♦ 80k
1
vote
2
answers
111
views
2
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Visualize paired end reads
paired-end alignment rna-seq written 6 weeks ago by Chirag Nepal • 2.2k • updated 5 weeks ago by jbalberge • 110
0
votes
1
answer
113
views
1
answer
How to report coverage at overlapping regions of paired-end reads?
illumina paired-end written 11 weeks ago by francois • 10 • updated 10 weeks ago by h.mon ♦ 29k
0
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0
answers
117
views
0
answers
Script for Assemble tandemly repeated on paired-end reads
assembly repeat tandem paired-end written 4 months ago by milan.calegari • 0
20
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2
answers
16k
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10 follow
2
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Understanding Samtools Flagstat Output
illumina paired-end picard samtools markduplicates written 6.4 years ago by geek_y ♦ 10k • updated 4 months ago by Nitha • 10
0
votes
0
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267
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0
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How Should I Trim My FASTQ File Now That I Merged Paired-End Reads
fastq paired-end written 5 months ago by isu2017 • 0
1
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1
answer
1.6k
views
1
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How to split Illumina Hiseq 2000 paired-end fastq files?
fastq paired-end rna-seq illumina hiseq 2000 written 4.3 years ago by Yuka Takemon • 20 • updated 5 months ago by ATpoint ♦ 31k
0
votes
0
answers
151
views
0
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How to filter both reads of paired end reads by AS when only 1 of the 2 reads has an AS below 50
paired-end alignment samtools sam sambamba written 6 months ago by jelle • 0
2
votes
2
answers
423
views
2
answers
featureCounts error with 150bp Paired end RNA seq data
ngs featurecounts paired-end rna-seq star written 7 months ago by Ankur B. Sharma • 10 • updated 7 months ago by swbarnes2 ♦ 7.5k
6
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0
answers
388
views
0
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Merging the output of salmon for RNA-seq counting with paired-end and single-end reads simultaneously
paired-end salmon rna-seq single-end written 7 months ago by nanoide • 40
2
votes
1
answer
200
views
1
answer
Paired-end reads that span a position in an assembly
bedtools genome paired-end assembly written 7 months ago by saladi1 • 30 • updated 7 months ago by Pierre Lindenbaum ♦ 127k
0
votes
0
answers
283
views
0
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Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 7 months ago by reza • 220
2
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1
answer
341
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1
answer
High G and low A,C,T content in the 1-10bp of Read2 file in a paired-end whole genome bisulfite sequencing, why?
bisulfite sequencing paired-end wgbs sequencing written 7 months ago by Floyd • 0 • updated 7 months ago by Devon Ryan ♦ 94k
2
votes
1
answer
294
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1
answer
ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.gz X_2.fastq.gz
fastq paired-end single-end ena written 7 months ago by Mr Locuace • 100 • updated 7 months ago by Sean Davis ♦ 26k
0
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0
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262
views
0
answers
bedtools coverage and paired-end data
bedtools paired-end rna-seq written 8 months ago by eric.londin • 20
0
votes
1
answer
250
views
1
answer
Any pitfalls to consider when using MACS on paired-end data when forward and reverse reads are different lengths?
macs paired-end written 11 months ago by rleach • 120
12
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3
answers
1.2k
views
6 follow
3
answers
Running STAR aligner with paired-end and single-end reads simultaneously
paired-end star single-end rna-seq written 12 months ago by nanoide • 40
1
vote
1
answer
532
views
1
answer
Paired-end reads merge tool: Multiple @ lines in merged output of FLASH tool
read merge paired-end fastq flash written 12 months ago by Ankit • 130 • updated 12 months ago by gb • 1.7k
1
vote
0
answers
315
views
0
answers
Calculating read count with paired end sequencing
genome paired-end alignment sequencing written 12 months ago by sb2108 • 0
1
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1
answer
464
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1
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MiRdeep2 for paired-end RNA-seq?
paired-end novel rna-seq mirdeep2 mirna written 12 months ago by gulamaltab • 0
2
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1
answer
2.8k
views
1
answer
ChIPseq paired-end bowtie2 concern regarding biological replicates
bowtie2 paired-end chip-seq written 5.7 years ago by NHEJ • 320 • updated 12 months ago by Biostar ♦♦ 20
0
votes
0
answers
242
views
0
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Map illumina reads to multi-fasta in "no mismatches" mode with statistics
sequencing dnaseq paired-end alignment assembly written 12 months ago by grassostefan • 10
9
votes
3
answers
6.6k
views
3
answers
Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
paired-end chip-seq normalisation written 5.1 years ago by James Ashmore • 2.8k • updated 13 months ago by Biostar ♦♦ 20
6
votes
5
answers
5.0k
views
7 follow
5
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Collect Read Pairs Where At Least One Read Is Mapped
paired-end samtools sam written 6.8 years ago by fridhackery • 140 • updated 13 months ago by ying.kev • 0
8
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2
answers
5.7k
views
2
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TrimGalore! on multiple paired fastq files
paired-end script rna-seq trimgalore! written 3.5 years ago by emblake • 50 • updated 13 months ago by rogangrant2022 • 10
0
votes
0
answers
546
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0
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Getting unmapped paired-end reads as fastq from unmapped.bam obtained with tophat2
alignment paired-end tophat2 rna-seq written 14 months ago by cris.kgs • 0
3
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2
answers
2.0k
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2
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Does The Mapping Of A Read'S Pair Affect Its Own Mapping Score In Bwa?
paired-end mapping bwa written 6.2 years ago by jhrf • 10 • updated 14 months ago by Biostar ♦♦ 20
1
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0
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1.3k
views
0
answers
java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
outofmemoryerror xmx paired-end bbmap repair.sh written 14 months ago by mb2subi • 0
0
votes
1
answer
479
views
1
answer
Problem mapping paired-end Illumina reads
paired-end alignment chip-seq written 14 months ago by biostart • 340 • updated 14 months ago by swbarnes2 ♦ 7.5k
0
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0
answers
468
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0
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How to generate bigwig file from paired end reads that overlap
paired-end clip bigwig rna-seq small rnas written 16 months ago by racrna • 0
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