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6 follow
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Trim Paired-end Fastq Files
trimmomatic paired-end rna-seq written 9 weeks ago by yuabrahamliu • 30 • updated 9 weeks ago by h.mon ♦ 19k
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1
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172
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1
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unmapped reads in paired-end run pf bowtie2
paired-end bowtie unmapped-reads written 3 months ago by Assa Yeroslaviz • 1.1k • updated 3 months ago by Devon Ryan ♦ 84k
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106
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merge aligned read pairs that overlap - keep the bases that match the reference
illumina paired-end written 3 months ago by Richard • 550
2
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2
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6.2k
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6 follow
2
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Merging Illumina Paired End Reads
illumina paired-end merge written 5.2 years ago by vijay • 1.4k • updated 3 months ago by Biostar ♦♦ 20
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210
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Trying to get consensus sequence from paired end alignment
paired-end alignment samtools bwa written 4 months ago by Sus • 0
1
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2
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332
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2
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Some explanation about what a paired-end sequencing really means
paired-end alignment written 4 months ago by Sus • 0 • updated 4 months ago by andrew.j.skelton73 ♦ 5.3k
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1
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302
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1
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Peak calling with MACS for paired end DNase-seq data
macs2 paired-end dna-seq bwa written 4 months ago by Bioinformatist Newbie • 230 • updated 4 months ago by igor ♦ 6.6k
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154
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Multiple global sequence alignment of paired end reads
assembly paired-end alignment tool dna written 4 months ago by mhkt19 • 0
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2.4k
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Identifying discordantly mapped reads
paired-end bam samtools written 2.9 years ago by Linda • 150 • updated 6 months ago by Pierre Lindenbaum ♦ 112k
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2
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617
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2
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Different coverage on RNA-Seq strands
paired-end rna-seq stranded written 11 months ago by rodri • 10 • updated 6 months ago by Mike • 30
3
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1
answer
270
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1
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alignment score and other values for the whole paired-end alignment (with overlap)
bowtie2 paired-end alignment sam scores written 6 months ago by shim • 10 • updated 6 months ago by Devon Ryan ♦ 84k
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313
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bbmap paired-end alignment problem
paired-end bbmap align written 6 months ago by mark.rose • 20
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2
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1.4k
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5 follow
2
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cutadapt loop and paired-end reads
paired-end cutadapt loop rna-seq bash written 16 months ago by sbrown669 • 20 • updated 7 months ago by montoya.oscar • 50
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4
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Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 2.4 years ago by chefarov • 100 • updated 7 months ago by Stephane Plaisance • 370
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232
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MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 7 months ago by ChIP-seeker • 0
0
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3
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1.3k
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3
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abyss-pe reading files endlessly with se command added
assembly paired-end miseq abyss written 2.5 years ago by pepijn.kooij • 0 • updated 7 months ago by Biostar ♦♦ 20
4
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1
answer
381
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1
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Sub_sampling Paired_end reads in Fastq.gz format.
paired-end rna-seq written 8 months ago by XBria • 40 • updated 8 months ago by Macspider • 2.5k
2
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4
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408
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4
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denovo assembly combining multiple data sets
illumina paired-end denovo single-end iontorrent written 8 months ago by slimane.khayi • 40
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1
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1.0k
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1
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Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic paired-end written 9 months ago by dllopezr • 20 • updated 9 months ago by Carlo Yague • 4.2k
0
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0
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502
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Paired end reads merged to single end for mapping - should i allow multi-overlap similar to paired end reads?
multi-overlap paired-end featurecounts single-end written 9 months ago by devikaparvathy • 20
1
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1
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343
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1
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Inner mate distance of paired-end reads counted in the coverage in IGV
paired-end inner mate distance igv written 10 months ago by mari.felix5723 • 10
4
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1
answer
692
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1
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Illumina NextSeq 500/550: PE or SE for ChIP seq and coverage?
paired-end single-end library sequencing written 10 months ago by Lila M • 390 • updated 10 months ago by Devon Ryan ♦ 84k
4
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1
answer
771
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1
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Separate the reverse sequence from R1 and corresponding forward seq from R2
sequencing illumina paired-end next-gen awk written 10 months ago by Sajan Raju • 0
1
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0
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412
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0
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Strange length of merged paired-end sequencing reads after using BBmerge
bbmerge paired-end alignment written 10 months ago by bioplanet • 40
8
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2
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4.7k
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7 follow
2
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Samtools Mpileup And Overlapping Paired-End Reads
paired-end pileup rna-seq written 4.8 years ago by alpha2zee • 100 • updated 10 months ago by Owen S. • 340
0
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0
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558
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Paired-end amplicon sequencing data
paired-end sequencing written 10 months ago by bioplanet • 40
3
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1
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1.2k
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1
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how to remove Overrepresented sequences for paired end with cutadapt?
trimming fastqc paired-end rna-seq cutadapt written 11 months ago by Lila M • 390
0
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382
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0
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is necessary to remove TruSeq index adapter with low percent and present in one read?
adapters paired-end quality control rna-seq written 11 months ago by Lila M • 390
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4
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17k
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6 follow
4
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Estimating Insert Size From Paired End Data.
picard paired-end alignment written 4.6 years ago by geek_y ♦ 8.7k • updated 11 months ago by jmodlis • 0
1
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1
answer
549
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1
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Error in running QoRTs after hisat2 alignment
qorts paired-end samtools java rna-seq written 11 months ago by bioinfo8 • 90 • updated 11 months ago by h.mon ♦ 19k
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