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<prev • 150 results • page 1 of 5 • next >
4
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1
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1
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TrimGalore! on multiple paired fastq files
paired-end script rna-seq trimgalore! written 11 months ago by emblake • 40 • updated 11 days ago by Biostar ♦♦ 20
0
votes
1
answer
115
views
1
answer
SAM Flags for illumina paired-end reads mapped on transcriptome
paired-end alignment sam flags transcriptome written 12 days ago by Macspider • 1.5k • updated 12 days ago by Devon Ryan ♦ 70k
2
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0
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265
views
0
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Trimming Overrepresented Sequences in paired-end RNA-Seq data, as underlined by FastQC.
paired-end rna-seq fastqc written 6 weeks ago by Shaurya Jauhari • 40 • updated 6 weeks ago by genomax ♦ 33k
4
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1
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847
views
1
answer
Tool: pairedBamToBed12: converts paired-end BAM to BED12 format, based on bedtools
paired-end cage tool written 24 months ago by Charles Plessy • 2.2k
4
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2
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251
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5 follow
2
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samtools view region
paired-end samtools rna-seq written 3 months ago by xd_d • 60 • updated 3 months ago by dariober • 8.0k
14
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2
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345
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5 follow
2
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Samtools: How can I extract properly-paired QC-passed reads instead of extracting only properly-paired?
ngs bam samtools paired-end sequencing written 3 months ago by bioinfo8 • 90
0
votes
0
answers
142
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0
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TEQC (Target Enrichment Quality Control, R package) : Clarification on paired-end reads
paired-end R ngs bioconductor teqc written 3 months ago by bioinfo8 • 90
0
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1
answer
214
views
1
answer
cutadapt loop and paired-end reads
paired-end cutadapt loop rna-seq bash written 4 months ago by sbrown669 • 10 • updated 4 months ago by h.mon ♦ 8.7k
0
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0
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287
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0
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Creating coverage files containing paired-end fragments of particular sizes
bed paired-end wig bigwig bam written 5 months ago by mmmmcandrew • 60
5
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0
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272
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0
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Forum: immediate help needed for genome sequence analysis of bacteria
genome paired-end webinar miseq forum written 5 months ago by mariomemory • 0 • updated 5 months ago by Michael Dondrup ♦ 43k
3
votes
1
answer
227
views
1
answer
How to remove Read Name (1st column) extension from a BAM file?
paired-end bam written 6 months ago by IrK • 10 • updated 6 months ago by Pierre Lindenbaum ♦ 98k
0
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1
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628
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1
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Kmergenie fails to fit models with --diploid settings
kmer paired-end kmergenie miseq written 18 months ago by pepijn.kooij • 0 • updated 6 months ago by Rayan Chikhi • 1.2k
5
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2
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407
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2
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How to merge paired-end reads from sam files?
seq paired-end bwa written 7 months ago by aquaq • 10 • updated 7 months ago by WouterDeCoster ♦ 21k
7
votes
4
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451
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4
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Error sorted paired-end .bam using samtools
paired-end erne samtools bam written 9 months ago by holbrookjoanna • 20 • updated 8 months ago by John ♦ 11k
6
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2
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1.2k
views
2
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Efficiently join paired-end read coordinates in the same line?
3c paired-end hic 4c written 2.9 years ago by daniel.soronellas • 320 • updated 9 months ago by Biostar ♦♦ 20
10
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2
answers
570
views
2
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tophat --max-multihits impacts 'mapped in a proper pair'
multireads tophat multihits paired-end rna-seq written 10 months ago by Carlo Yague • 3.2k • updated 10 months ago by John ♦ 11k
10
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2
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1.0k
views
2
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How to properly combine two bam files of a paired-end data
paired-end sequencing written 10 months ago by izzy.yichao.cai • 110 • updated 10 months ago by i.sudbery • 1.6k
3
votes
2
answers
779
views
2
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How to resync paired-end data?
de novo bowtie2 paired-end transcriptome hisat2 written 12 months ago by germelcar • 20 • updated 12 months ago by Charles Plessy • 2.2k
3
votes
1
answer
1.0k
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1
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Hg19 Strand Information Of Sam Output.
illumina paired-end sam hg19 written 3.5 years ago by Coryza • 20 • updated 12 months ago by Biostar ♦♦ 20
2
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1
answer
1.8k
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1
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How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein Coding Genes ?
overlap paired-end rna-seq written 3.8 years ago by biorepine • 1.2k • updated 12 months ago by Biostar ♦♦ 20
5
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4
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615
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4
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Assembling de novo with multiple versions of paired-end reads
de novo assembly paired-end versions illumina written 12 months ago by kingcohn • 20
1
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1
answer
624
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1
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SPADES assembly failed, unequal amount of reads
assembly paired-end spades written 12 months ago by kingcohn • 20 • updated 12 months ago by harold.smith.tarheel • 3.8k
0
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1
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470
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1
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Estimate stdev and mean in paired-end
assembly paired-end masurca sequencing written 13 months ago by Ric • 140 • updated 13 months ago by i.sudbery • 1.6k
0
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1
answer
453
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1
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Alignment with BWA: how to discard multi mappers?
paired-end bwa written 13 months ago by ThePresident • 70 • updated 13 months ago by igor • 4.5k
2
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3
answers
3.4k
views
6 follow
3
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Tophat - Understated Number Of Reads In The "Align_Summary.Txt" File
paired-end tophat2 mapping rna-seq written 3.6 years ago by jakalssj3 • 80 • updated 13 months ago by jgranek • 10
0
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1
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379
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1
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Looking for structural variants with paired-end sequencing data
illumina paired-end written 14 months ago by ThePresident • 70 • updated 14 months ago by zwdzwd • 110
0
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0
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302
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0
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Tophat chromosome position greater than chromosome size
tophat paired-end rna-seq written 14 months ago by Jackie • 40
3
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3
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1.1k
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3
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16S Paired-End Illumina MiSeq Data in Qiime
illumina 16s miseq paired-end written 14 months ago by Ruth M. • 10 • updated 14 months ago by Picasa • 310
0
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0
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476
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0
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Handling amplicon Illumina paired-end library without overlap
illumina paired-end demultiplexing written 14 months ago by Obi • 10
9
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3
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3.5k
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3
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Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 16 months ago by chefarov • 70 • updated 14 months ago by Biostar ♦♦ 20
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