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<prev • 202 results • page 1 of 7 • next >
4
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1
answer
29
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1
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How to assemble mulitple paired-end files?
assembly paired-end written 37 minutes ago by audrey.durand • 0 • updated 14 minutes ago by genomax ♦ 87k
0
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0
answers
57
views
0
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Interpreting paired-end tumor-normal WES
exome sra fastq paired-end written 1 day ago by the_darkside • 0
4
votes
1
answer
153
views
1
answer
What sequence do I get when using paired-end stranded protocol
directional paired-end stranded rna-seq sequencing written 9 weeks ago by Assa Yeroslaviz • 1.4k • updated 9 weeks ago by caggtaagtat • 1.1k
2
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2
answers
135
views
2
answers
Paired-end reads reported without mates: how to play matchmaker?
sequencing wgs paired-end unpaired mates dna written 3 months ago by jipvandinter • 0
3
votes
1
answer
258
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1
answer
bcl2fastq results in Poly-N in R1
scrna-seq single-cell paired-end bcl2fastq rna-seq written 5 months ago by Assa Yeroslaviz • 1.4k • updated 5 months ago by genomax ♦ 87k
1
vote
2
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178
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2
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Visualize paired end reads
paired-end alignment rna-seq written 5 months ago by Chirag Nepal • 2.2k • updated 5 months ago by jbalberge • 140
3
votes
1
answer
181
views
1
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How to report coverage at overlapping regions of paired-end reads?
illumina paired-end written 6 months ago by francois • 10 • updated 6 months ago by h.mon ♦ 30k
0
votes
0
answers
175
views
0
answers
Script for Assemble tandemly repeated on paired-end reads
assembly repeat tandem paired-end written 8 months ago by milan.calegari • 0
22
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2
answers
17k
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13 follow
2
answers
Understanding Samtools Flagstat Output
illumina paired-end picard samtools markduplicates written 6.8 years ago by geek_y ♦ 11k • updated 9 months ago by Nitha • 10
0
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0
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414
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0
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How Should I Trim My FASTQ File Now That I Merged Paired-End Reads
fastq paired-end written 9 months ago by isu2017 • 0
1
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1
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1.7k
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1
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How to split Illumina Hiseq 2000 paired-end fastq files?
fastq paired-end rna-seq illumina hiseq 2000 written 4.6 years ago by Yuka Takemon • 40 • updated 9 months ago by ATpoint ♦ 36k
0
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0
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212
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0
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How to filter both reads of paired end reads by AS when only 1 of the 2 reads has an AS below 50
paired-end alignment samtools sam sambamba written 10 months ago by jelle • 0
2
votes
2
answers
590
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2
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featureCounts error with 150bp Paired end RNA seq data
ngs featurecounts paired-end rna-seq star written 12 months ago by Ankur B. Sharma • 10 • updated 11 months ago by swbarnes2 ♦ 8.1k
6
votes
0
answers
564
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0
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Merging the output of salmon for RNA-seq counting with paired-end and single-end reads simultaneously
paired-end salmon rna-seq single-end written 11 months ago by nanoide • 50
2
votes
1
answer
254
views
1
answer
Paired-end reads that span a position in an assembly
bedtools genome paired-end assembly written 11 months ago by saladi1 • 30 • updated 11 months ago by Pierre Lindenbaum ♦ 129k
0
votes
0
answers
358
views
0
answers
Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 12 months ago by reza • 230
2
votes
1
answer
474
views
1
answer
High G and low A,C,T content in the 1-10bp of Read2 file in a paired-end whole genome bisulfite sequencing, why?
bisulfite sequencing paired-end wgbs sequencing written 12 months ago by Floyd • 0 • updated 12 months ago by Devon Ryan ♦ 96k
3
votes
1
answer
413
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1
answer
ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.gz X_2.fastq.gz
fastq paired-end single-end ena written 12 months ago by Mr Locuace • 100 • updated 12 months ago by Sean Davis ♦ 26k
1
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0
answers
411
views
0
answers
bedtools coverage and paired-end data
bedtools paired-end rna-seq written 12 months ago by eric.londin • 30
0
votes
1
answer
311
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1
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Any pitfalls to consider when using MACS on paired-end data when forward and reverse reads are different lengths?
macs paired-end written 15 months ago by rleach • 120
12
votes
3
answers
1.6k
views
6 follow
3
answers
Running STAR aligner with paired-end and single-end reads simultaneously
paired-end star single-end rna-seq written 16 months ago by nanoide • 50
1
vote
1
answer
713
views
1
answer
Paired-end reads merge tool: Multiple @ lines in merged output of FLASH tool
read merge paired-end fastq flash written 16 months ago by Ankit • 140 • updated 16 months ago by gb • 1.8k
1
vote
0
answers
365
views
0
answers
Calculating read count with paired end sequencing
genome paired-end alignment sequencing written 16 months ago by sb2108 • 0
1
vote
1
answer
623
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1
answer
MiRdeep2 for paired-end RNA-seq?
paired-end novel rna-seq mirdeep2 mirna written 16 months ago by gulamaltab • 0
2
votes
1
answer
2.9k
views
1
answer
ChIPseq paired-end bowtie2 concern regarding biological replicates
bowtie2 paired-end chip-seq written 6.0 years ago by NHEJ • 320 • updated 16 months ago by Biostar ♦♦ 20
0
votes
0
answers
297
views
0
answers
Map illumina reads to multi-fasta in "no mismatches" mode with statistics
sequencing dnaseq paired-end alignment assembly written 16 months ago by grassostefan • 10
9
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3
answers
6.9k
views
3
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Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
paired-end chip-seq normalisation written 5.5 years ago by James Ashmore • 3.0k • updated 17 months ago by Biostar ♦♦ 20
6
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5
answers
5.2k
views
7 follow
5
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Collect Read Pairs Where At Least One Read Is Mapped
paired-end samtools sam written 7.1 years ago by fridhackery • 150 • updated 17 months ago by ying.kev • 0
8
votes
2
answers
6.6k
views
2
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TrimGalore! on multiple paired fastq files
paired-end script rna-seq trimgalore! written 3.8 years ago by emblake • 50 • updated 18 months ago by rogangrant2022 • 10
0
votes
0
answers
739
views
0
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Getting unmapped paired-end reads as fastq from unmapped.bam obtained with tophat2
alignment paired-end tophat2 rna-seq written 18 months ago by cris.kgs • 0
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