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<prev • 193 results • page 1 of 7 • next >
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How to split Illumina Hiseq 2000 paired-end fastq files?
fastq paired-end rna-seq illumina hiseq 2000 written 3.8 years ago by Yuka Takemon • 20 • updated 10 days ago by ATpoint ♦ 24k
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How to filter both reads of paired end reads by AS when only 1 of the 2 reads has an AS below 50
paired-end alignment samtools sam sambamba written 4 weeks ago by jelle • 0
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featureCounts error with 150bp Paired end RNA seq data
ngs featurecounts paired-end rna-seq star written 11 weeks ago by ankuresearch • 10 • updated 7 weeks ago by swbarnes2 ♦ 6.7k
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154
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Merging the output of salmon for RNA-seq counting with paired-end and single-end reads simultaneously
paired-end salmon rna-seq single-end written 8 weeks ago by nanoide • 30
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Paired-end reads that span a position in an assembly
bedtools genome paired-end assembly written 9 weeks ago by saladi1 • 30 • updated 9 weeks ago by Pierre Lindenbaum ♦ 123k
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Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 10 weeks ago by reza • 210
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128
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High G and low A,C,T content in the 1-10bp of Read2 file in a paired-end whole genome bisulfite sequencing, why?
bisulfite sequencing paired-end wgbs sequencing written 10 weeks ago by Floyd • 0 • updated 10 weeks ago by Devon Ryan ♦ 92k
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167
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ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.gz X_2.fastq.gz
fastq paired-end single-end ena written 11 weeks ago by Mr Locuace • 90 • updated 11 weeks ago by Sean Davis ♦ 25k
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bedtools coverage and paired-end data
bedtools paired-end rna-seq written 12 weeks ago by eric.londin • 20
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167
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Any pitfalls to consider when using MACS on paired-end data when forward and reverse reads are different lengths?
macs paired-end written 6 months ago by rleach • 120
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3
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715
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6 follow
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Running STAR aligner with paired-end and single-end reads simultaneously
paired-end star single-end rna-seq written 7 months ago by nanoide • 30
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Paired-end reads merge tool: Multiple @ lines in merged output of FLASH tool
read merge paired-end fastq flash written 6 months ago by Ankit • 120 • updated 6 months ago by gb • 1.0k
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Calculating read count with paired end sequencing
genome paired-end alignment sequencing written 6 months ago by sb2108 • 0
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1
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300
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1
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MiRdeep2 for paired-end RNA-seq?
paired-end novel rna-seq mirdeep2 mirna written 7 months ago by gulamaltab • 0
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ChIPseq paired-end bowtie2 concern regarding biological replicates
bowtie2 paired-end chip-seq written 5.2 years ago by NHEJ • 320 • updated 7 months ago by Biostar ♦♦ 20
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168
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Map illumina reads to multi-fasta in "no mismatches" mode with statistics
sequencing dnaseq paired-end alignment assembly written 7 months ago by grassostefan • 10
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Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
paired-end chip-seq normalisation written 4.7 years ago by James Ashmore • 2.7k • updated 8 months ago by Biostar ♦♦ 20
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7 follow
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Collect Read Pairs Where At Least One Read Is Mapped
paired-end samtools sam written 6.3 years ago by fridhackery • 140 • updated 8 months ago by ying.kev • 0
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TrimGalore! on multiple paired fastq files
paired-end script rna-seq trimgalore! written 3.0 years ago by emblake • 50 • updated 8 months ago by rogangrant2022 • 10
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Getting unmapped paired-end reads as fastq from unmapped.bam obtained with tophat2
alignment paired-end tophat2 rna-seq written 9 months ago by cris.kgs • 0
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Does The Mapping Of A Read'S Pair Affect Its Own Mapping Score In Bwa?
paired-end mapping bwa written 5.8 years ago by jhrf • 10 • updated 9 months ago by Biostar ♦♦ 20
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java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
outofmemoryerror xmx paired-end bbmap repair.sh written 9 months ago by mb2subi • 0
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358
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Problem mapping paired-end Illumina reads
paired-end alignment chip-seq written 9 months ago by biostart • 310 • updated 9 months ago by swbarnes2 ♦ 6.7k
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How to generate bigwig file from paired end reads that overlap
paired-end clip bigwig rna-seq small rnas written 11 months ago by racrna • 0
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376
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BBMAP paired end alignment problem
paired-end bbmap align written 11 months ago by mark.rose • 30 • updated 11 months ago by h.mon ♦ 27k
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How do I configure the read name output from STAR?
paired-end picard chip-seq star written 4.5 years ago by jgbradley1 • 100 • updated 12 months ago by RamRS ♦ 24k
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3
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978
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6 follow
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Trim Paired-end Fastq Files
trimmomatic paired-end rna-seq written 15 months ago by yuabrahamliu • 40 • updated 15 months ago by h.mon ♦ 27k
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unmapped reads in paired-end run pf bowtie2
paired-end bowtie unmapped-reads written 16 months ago by Assa Yeroslaviz • 1.2k • updated 16 months ago by Devon Ryan ♦ 92k
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merge aligned read pairs that overlap - keep the bases that match the reference
illumina paired-end written 16 months ago by Richard • 570
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6 follow
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Merging Illumina Paired End Reads
illumina paired-end merge written 6.3 years ago by vijay • 1.5k • updated 16 months ago by Biostar ♦♦ 20
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