Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 210 results • page 1 of 7 • next >
1
vote
0
answers
111
views
0
answers
Collapsing my paired-end reads before or after mapping ?
paired-end mapping single-end collapse written 11 days ago by yolek64754 • 30 • updated 4 days ago by Biostar ♦♦ 20
0
votes
0
answers
184
views
0
answers
Weird results in TopHat2 paired-end alignment
paired-end tophat2 rna-seq written 3 months ago by Sam • 120 • updated 5 days ago by Biostar ♦♦ 20
53
votes
4
answers
26k
views
23 follow
4
answers
How To Determine If Paired–End Illumina Rnaseq Reads Are Strand–Specific
illumina paired-end strand trinity written 7.8 years ago by bedeabc • 190 • updated 7 weeks ago by andrzej.koczut • 0
1
vote
1
answer
215
views
1
answer
Using paired-end date as single-end for mapping with bwa mem. Good, bad or ugly?
polishing paired-end alignment racon bwa written 7 weeks ago by resug • 0 • updated 7 weeks ago by GenoMax ♦ 94k
0
votes
0
answers
1.3k
views
0
answers
Trying to get consensus sequence from paired end alignment
paired-end alignment samtools bwa written 2.7 years ago by Sus • 20 • updated 9 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
203
views
0
answers
How to split PE fastq file (hear me out), where instead of listing as a pair of 150bp reads, the previous user concatenated them into one 300bp string?
paired-end sequence fastq rna-seq written 3 months ago by turo.1 • 20
3
votes
1
answer
1.9k
views
1
answer
Hg19 Strand Information Of Sam Output.
illumina paired-end sam hg19 written 6.8 years ago by Coryza • 30 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
168
views
0
answers
How to count the paired end reads number in given regions
hi-c paired-end bam hic-pro written 4 months ago by ben.kunfang • 30
0
votes
1
answer
360
views
1
answer
Usefulness of paired-end sequencing (noob question)
paired-end tophat rna-seq written 4 months ago by Sam • 120
5
votes
2
answers
301
views
5 follow
2
answers
Paired end sequencing in case of a short biological insert
paired-end rna-seq written 4 months ago by Sam • 120
0
votes
0
answers
232
views
0
answers
lower exon percentage
alignment paired-end qualimap star rna-seq written 4 months ago by anubratadas • 0
5
votes
1
answer
247
views
5 follow
1
answer
How to assemble mulitple paired-end files?
assembly paired-end written 5 months ago by Audrey • 20 • updated 5 months ago by GenoMax ♦ 94k
0
votes
0
answers
202
views
0
answers
Interpreting paired-end tumor-normal WES
exome sra fastq paired-end written 5 months ago by the_darkside • 0
4
votes
1
answer
305
views
1
answer
What sequence do I get when using paired-end stranded protocol
directional paired-end stranded rna-seq sequencing written 7 months ago by Assa Yeroslaviz • 1.4k • updated 7 months ago by caggtaagtat • 1.4k
2
votes
2
answers
239
views
2
answers
Paired-end reads reported without mates: how to play matchmaker?
sequencing wgs paired-end unpaired mates dna written 8 months ago by jipvandinter • 0
3
votes
1
answer
447
views
1
answer
bcl2fastq results in Poly-N in R1
scrna-seq single-cell paired-end bcl2fastq rna-seq written 11 months ago by Assa Yeroslaviz • 1.4k • updated 11 months ago by GenoMax ♦ 94k
1
vote
2
answers
277
views
2
answers
Visualize paired end reads
paired-end alignment rna-seq written 11 months ago by Chirag Nepal • 2.3k • updated 11 months ago by jbalberge • 150
3
votes
1
answer
318
views
1
answer
How to report coverage at overlapping regions of paired-end reads?
illumina paired-end written 12 months ago by francois • 10 • updated 12 months ago by h.mon ♦ 32k
0
votes
0
answers
249
views
0
answers
Script for Assemble tandemly repeated on paired-end reads
assembly repeat tandem paired-end written 14 months ago by milan.calegari • 0
22
votes
2
answers
18k
views
13 follow
2
answers
Understanding Samtools Flagstat Output
illumina paired-end picard samtools markduplicates written 7.2 years ago by geek_y ♦ 11k • updated 14 months ago by Nitha • 10
0
votes
0
answers
639
views
0
answers
How Should I Trim My FASTQ File Now That I Merged Paired-End Reads
fastq paired-end written 14 months ago by isu2017 • 0
1
vote
1
answer
1.8k
views
1
answer
How to split Illumina Hiseq 2000 paired-end fastq files?
fastq paired-end rna-seq illumina hiseq 2000 written 5.1 years ago by Yuka Takemon • 40 • updated 15 months ago by ATpoint ♦ 44k
0
votes
0
answers
349
views
0
answers
How to filter both reads of paired end reads by AS when only 1 of the 2 reads has an AS below 50
paired-end alignment samtools sam sambamba written 16 months ago by jelle • 0
2
votes
2
answers
821
views
2
answers
featureCounts error with 150bp Paired end RNA seq data
ngs featurecounts paired-end rna-seq star written 17 months ago by Ankur B. Sharma • 20 • updated 16 months ago by swbarnes2 ♦ 9.3k
6
votes
0
answers
860
views
0
answers
Merging the output of salmon for RNA-seq counting with paired-end and single-end reads simultaneously
paired-end salmon rna-seq single-end written 17 months ago by nanoide • 60
2
votes
1
answer
317
views
1
answer
Paired-end reads that span a position in an assembly
bedtools genome paired-end assembly written 17 months ago by saladi1 • 30 • updated 17 months ago by Pierre Lindenbaum ♦ 132k
0
votes
0
answers
450
views
0
answers
Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 17 months ago by reza • 230
2
votes
1
answer
667
views
1
answer
High G and low A,C,T content in the 1-10bp of Read2 file in a paired-end whole genome bisulfite sequencing, why?
bisulfite sequencing paired-end wgbs sequencing written 17 months ago by Floyd • 0 • updated 17 months ago by Devon Ryan ♦ 98k
3
votes
1
answer
557
views
1
answer
ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.gz X_2.fastq.gz
fastq paired-end single-end ena written 17 months ago by Mr Locuace • 100 • updated 17 months ago by Sean Davis ♦ 26k
1
vote
0
answers
631
views
0
answers
bedtools coverage and paired-end data
bedtools paired-end rna-seq written 17 months ago by eric.londin • 30
<prev • 210 results • page 1 of 7 • next >
Recent Votes
Recent Locations • All »
  • Nigeria/Covenant University, just now
  • USA, 1 minute ago
  • Australia, 11 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1283 users visited in the last hour