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<prev • 208 results • page 1 of 7 • next >
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Weird results in TopHat2 paired-end alignment
paired-end tophat2 rna-seq written 13 days ago by Sam • 50
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141
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How to split PE fastq file (hear me out), where instead of listing as a pair of 150bp reads, the previous user concatenated them into one 300bp string?
paired-end sequence fastq rna-seq written 4 weeks ago by turo.1 • 20
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1
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1.8k
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1
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Hg19 Strand Information Of Sam Output.
illumina paired-end sam hg19 written 6.6 years ago by Coryza • 30 • updated 5 weeks ago by Biostar ♦♦ 20
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114
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How to count the paired end reads number in given regions
hi-c paired-end bam hic-pro written 7 weeks ago by ben.kunfang • 10
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1
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320
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1
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Usefulness of paired-end sequencing (noob question)
paired-end tophat rna-seq written 8 weeks ago by Sam • 50
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2
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209
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5 follow
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Paired end sequencing in case of a short biological insert
paired-end rna-seq written 9 weeks ago by Sam • 50
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165
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lower exon percentage
alignment paired-end qualimap star rna-seq written 9 weeks ago by anubratadas • 0
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1
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177
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5 follow
1
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How to assemble mulitple paired-end files?
assembly paired-end written 11 weeks ago by Audrey • 20 • updated 11 weeks ago by genomax ♦ 91k
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154
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Interpreting paired-end tumor-normal WES
exome sra fastq paired-end written 12 weeks ago by the_darkside • 0
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1
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222
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1
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What sequence do I get when using paired-end stranded protocol
directional paired-end stranded rna-seq sequencing written 5 months ago by Assa Yeroslaviz • 1.4k • updated 5 months ago by snpPlanet • 1.3k
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2
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185
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2
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Paired-end reads reported without mates: how to play matchmaker?
sequencing wgs paired-end unpaired mates dna written 6 months ago by jipvandinter • 0
3
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1
answer
352
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1
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bcl2fastq results in Poly-N in R1
scrna-seq single-cell paired-end bcl2fastq rna-seq written 8 months ago by Assa Yeroslaviz • 1.4k • updated 8 months ago by genomax ♦ 91k
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2
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226
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2
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Visualize paired end reads
paired-end alignment rna-seq written 8 months ago by Chirag Nepal • 2.2k • updated 8 months ago by jbalberge • 150
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1
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232
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1
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How to report coverage at overlapping regions of paired-end reads?
illumina paired-end written 9 months ago by francois • 10 • updated 9 months ago by h.mon ♦ 31k
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214
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Script for Assemble tandemly repeated on paired-end reads
assembly repeat tandem paired-end written 11 months ago by milan.calegari • 0
22
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2
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17k
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13 follow
2
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Understanding Samtools Flagstat Output
illumina paired-end picard samtools markduplicates written 7.0 years ago by geek_y ♦ 11k • updated 11 months ago by Nitha • 10
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534
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How Should I Trim My FASTQ File Now That I Merged Paired-End Reads
fastq paired-end written 12 months ago by isu2017 • 0
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1
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How to split Illumina Hiseq 2000 paired-end fastq files?
fastq paired-end rna-seq illumina hiseq 2000 written 4.9 years ago by Yuka Takemon • 40 • updated 12 months ago by ATpoint ♦ 40k
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261
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How to filter both reads of paired end reads by AS when only 1 of the 2 reads has an AS below 50
paired-end alignment samtools sam sambamba written 13 months ago by jelle • 0
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2
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708
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2
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featureCounts error with 150bp Paired end RNA seq data
ngs featurecounts paired-end rna-seq star written 15 months ago by Ankur B. Sharma • 10 • updated 14 months ago by swbarnes2 ♦ 8.9k
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684
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Merging the output of salmon for RNA-seq counting with paired-end and single-end reads simultaneously
paired-end salmon rna-seq single-end written 14 months ago by nanoide • 50
2
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1
answer
282
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1
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Paired-end reads that span a position in an assembly
bedtools genome paired-end assembly written 14 months ago by saladi1 • 30 • updated 14 months ago by Pierre Lindenbaum ♦ 131k
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401
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Issue with Bowtie2 mapping
trimmomatic bowtie2 paired-end mapping written 14 months ago by reza • 230
2
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1
answer
578
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1
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High G and low A,C,T content in the 1-10bp of Read2 file in a paired-end whole genome bisulfite sequencing, why?
bisulfite sequencing paired-end wgbs sequencing written 14 months ago by Floyd • 0 • updated 14 months ago by Devon Ryan ♦ 97k
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1
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478
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1
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ENA fastq file shown as single-end but has 3 fastq files: X.fastq.gz X_1.fastq.gz X_2.fastq.gz
fastq paired-end single-end ena written 14 months ago by Mr Locuace • 100 • updated 14 months ago by Sean Davis ♦ 26k
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0
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517
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bedtools coverage and paired-end data
bedtools paired-end rna-seq written 15 months ago by eric.londin • 30
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1
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344
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1
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Any pitfalls to consider when using MACS on paired-end data when forward and reverse reads are different lengths?
macs paired-end written 18 months ago by rleach • 120
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3
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1.9k
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6 follow
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Running STAR aligner with paired-end and single-end reads simultaneously
paired-end star single-end rna-seq written 19 months ago by nanoide • 50
1
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1
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794
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1
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Paired-end reads merge tool: Multiple @ lines in merged output of FLASH tool
read merge paired-end fastq flash written 19 months ago by Ankit • 140 • updated 19 months ago by gb • 1.9k
1
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398
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0
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Calculating read count with paired end sequencing
genome paired-end alignment sequencing written 19 months ago by sb2108 • 0
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