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<prev • 185 results • page 1 of 7 • next >
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Any pitfalls to consider when using MACS on paired-end data when forward and reverse reads are different lengths?
macs paired-end written 9 weeks ago by rleach • 120
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447
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6 follow
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Running STAR aligner with paired-end and single-end reads simultaneously
paired-end star single-end rna-seq written 3 months ago by nanoide • 30
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191
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Paired-end reads merge tool: Multiple @ lines in merged output of FLASH tool
read merge paired-end fastq flash written 12 weeks ago by Ankit • 100 • updated 12 weeks ago by gb • 790
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160
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Calculating read count with paired end sequencing
genome paired-end alignment sequencing written 12 weeks ago by sb2108 • 0
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179
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MiRdeep2 for paired-end RNA-seq?
paired-end novel rna-seq mirdeep2 mirna written 3 months ago by gulamaltab • 0
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ChIPseq paired-end bowtie2 concern regarding biological replicates
bowtie2 paired-end chip-seq written 4.9 years ago by NHEJ • 320 • updated 3 months ago by Biostar ♦♦ 20
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112
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Map illumina reads to multi-fasta in "no mismatches" mode with statistics
sequencing dnaseq paired-end alignment assembly written 3 months ago by grassostefan • 0
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3
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Normalising ChIP-seq data to RPM using a 1 or 2 count for paired-end data?
paired-end chip-seq normalisation written 4.4 years ago by James Ashmore • 2.6k • updated 4 months ago by Biostar ♦♦ 20
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7 follow
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Collect Read Pairs Where At Least One Read Is Mapped
paired-end samtools sam written 6.0 years ago by fridhackery • 140 • updated 4 months ago by ying.kev • 0
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TrimGalore! on multiple paired fastq files
paired-end script rna-seq trimgalore! written 2.7 years ago by emblake • 50 • updated 4 months ago by rogangrant2022 • 10
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257
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Getting unmapped paired-end reads as fastq from unmapped.bam obtained with tophat2
alignment paired-end tophat2 rna-seq written 5 months ago by cris.kgs • 0
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Does The Mapping Of A Read'S Pair Affect Its Own Mapping Score In Bwa?
paired-end mapping bwa written 5.5 years ago by jhrf • 10 • updated 5 months ago by Biostar ♦♦ 20
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java.lang.OutOfMemoryError: Java heap space not solve with -Xmx
outofmemoryerror xmx paired-end bbmap repair.sh written 5 months ago by mb2subi • 0
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285
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Problem mapping paired-end Illumina reads
paired-end alignment chip-seq written 5 months ago by biostart • 290 • updated 5 months ago by swbarnes2 ♦ 5.8k
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233
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How to generate bigwig file from paired end reads that overlap
paired-end clip bigwig rna-seq small rnas written 7 months ago by racrna • 0
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1
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303
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1
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BBMAP paired end alignment problem
paired-end bbmap align written 7 months ago by mark.rose • 30 • updated 7 months ago by h.mon ♦ 26k
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How do I configure the read name output from STAR?
paired-end picard chip-seq star written 4.2 years ago by jgbradley1 • 100 • updated 8 months ago by RamRS ♦ 22k
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3
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728
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6 follow
3
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Trim Paired-end Fastq Files
trimmomatic paired-end rna-seq written 11 months ago by yuabrahamliu • 40 • updated 11 months ago by h.mon ♦ 26k
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unmapped reads in paired-end run pf bowtie2
paired-end bowtie unmapped-reads written 12 months ago by Assa Yeroslaviz • 1.2k • updated 12 months ago by Devon Ryan ♦ 90k
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354
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merge aligned read pairs that overlap - keep the bases that match the reference
illumina paired-end written 12 months ago by Richard • 550
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2
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6.9k
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6 follow
2
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Merging Illumina Paired End Reads
illumina paired-end merge written 6.0 years ago by vijay • 1.5k • updated 12 months ago by Biostar ♦♦ 20
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610
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Trying to get consensus sequence from paired end alignment
paired-end alignment samtools bwa written 13 months ago by Sus • 10
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2
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4.8k
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2
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Some explanation about what a paired-end sequencing really means
paired-end alignment written 13 months ago by Sus • 10 • updated 13 months ago by andrew.j.skelton73 ♦ 5.7k
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Peak calling with MACS for paired end DNase-seq data
macs2 paired-end dna-seq bwa written 13 months ago by Bioinformatist Newbie • 230 • updated 13 months ago by igor ♦ 7.7k
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334
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Multiple global sequence alignment of paired end reads
assembly paired-end alignment tool dna written 13 months ago by mhkt19 • 0
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2
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3.3k
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2
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Identifying discordantly mapped reads
paired-end bam samtools written 3.7 years ago by Linda • 150 • updated 15 months ago by Pierre Lindenbaum ♦ 121k
3
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1.0k
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2
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Different coverage on RNA-Seq strands
paired-end rna-seq stranded written 20 months ago by rodri • 10 • updated 15 months ago by Mike • 30
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535
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1
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alignment score and other values for the whole paired-end alignment (with overlap)
bowtie2 paired-end alignment sam scores written 15 months ago by shim • 10 • updated 15 months ago by Devon Ryan ♦ 90k
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707
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bbmap paired-end alignment problem
paired-end bbmap align written 15 months ago by mark.rose • 30
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2
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2.5k
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5 follow
2
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cutadapt loop and paired-end reads
paired-end cutadapt loop rna-seq bash written 2.1 years ago by sbrown669 • 20 • updated 16 months ago by montoya.oscar • 50
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