Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: paired-end • reset
or   Classic search
<prev • 167 results • page 1 of 6 • next >
3
votes
2
answers
2.0k
views
2
answers
Identifying discordantly mapped reads
paired-end bam samtools written 2.5 years ago by Linda • 150 • updated 4 weeks ago by Pierre Lindenbaum ♦ 106k
3
votes
2
answers
440
views
2
answers
Different coverage on RNA-Seq strands
paired-end rna-seq stranded written 6 months ago by rodri • 10 • updated 7 weeks ago by Mike • 30
3
votes
1
answer
141
views
1
answer
alignment score and other values for the whole paired-end alignment (with overlap)
bowtie2 paired-end alignment sam scores written 7 weeks ago by shim • 10 • updated 7 weeks ago by Devon Ryan ♦ 78k
0
votes
0
answers
162
views
0
answers
bbmap paired-end alignment problem
paired-end bbmap align written 7 weeks ago by mark.rose • 10
2
votes
2
answers
788
views
2
answers
cutadapt loop and paired-end reads
paired-end cutadapt loop rna-seq bash written 11 months ago by sbrown669 • 20 • updated 9 weeks ago by montoya.oscar • 40
9
votes
4
answers
5.6k
views
4
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 23 months ago by chefarov • 80 • updated 10 weeks ago by Stephane Plaisance • 360
0
votes
0
answers
159
views
0
answers
MACS's option corresponding to HOMER's -sspe
macs homer paired-end chip-seq strand-specific written 10 weeks ago by ChIP-seeker • 0
0
votes
3
answers
1.1k
views
3
answers
abyss-pe reading files endlessly with se command added
assembly paired-end miseq abyss written 2.1 years ago by pepijn.kooij • 0 • updated 11 weeks ago by Biostar ♦♦ 20
4
votes
1
answer
251
views
1
answer
Sub_sampling Paired_end reads in Fastq.gz format.
paired-end rna-seq written 3 months ago by XBria • 40 • updated 3 months ago by Macspider • 2.4k
2
votes
4
answers
316
views
4
answers
denovo assembly combining multiple data sets
illumina paired-end denovo single-end iontorrent written 3 months ago by slimane.khayi • 40
1
vote
1
answer
407
views
1
answer
Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic paired-end written 4 months ago by dllopezr • 0 • updated 4 months ago by Carlo Yague • 3.9k
0
votes
0
answers
269
views
0
answers
Paired end reads merged to single end for mapping - should i allow multi-overlap similar to paired end reads?
multi-overlap paired-end featurecounts single-end written 4 months ago by devikaparvathy • 10
0
votes
1
answer
241
views
1
answer
Inner mate distance of paired-end reads counted in the coverage in IGV
paired-end inner mate distance igv written 5 months ago by mari.felix5723 • 0
4
votes
1
answer
400
views
1
answer
Illumina NextSeq 500/550: PE or SE for ChIP seq and coverage?
paired-end single-end library sequencing written 5 months ago by Lila M • 370 • updated 5 months ago by Devon Ryan ♦ 78k
4
votes
1
answer
390
views
1
answer
Separate the reverse sequence from R1 and corresponding forward seq from R2
sequencing illumina paired-end next-gen awk written 5 months ago by Sajan Raju • 0
1
vote
0
answers
269
views
0
answers
Strange length of merged paired-end sequencing reads after using BBmerge
bbmerge paired-end alignment written 5 months ago by bioplanet • 40
7
votes
2
answers
4.3k
views
7 follow
2
answers
Samtools Mpileup And Overlapping Paired-End Reads
paired-end pileup rna-seq written 4.4 years ago by alpha2zee • 100 • updated 5 months ago by Owen S. • 330
0
votes
0
answers
350
views
0
answers
Paired-end amplicon sequencing data
paired-end sequencing written 5 months ago by bioplanet • 40
3
votes
1
answer
635
views
1
answer
how to remove Overrepresented sequences for paired end with cutadapt?
trimming fastqc paired-end rna-seq cutadapt written 6 months ago by Lila M • 370
0
votes
0
answers
284
views
0
answers
is necessary to remove TruSeq index adapter with low percent and present in one read?
adapters paired-end quality control rna-seq written 6 months ago by Lila M • 370
6
votes
5
answers
16k
views
6 follow
5
answers
Estimating Insert Size From Paired End Data.
picard paired-end alignment written 4.2 years ago by geek_y ♦ 8.4k • updated 6 months ago by jmodlis • 0
1
vote
1
answer
346
views
1
answer
Error in running QoRTs after hisat2 alignment
qorts paired-end samtools java rna-seq written 6 months ago by bioinfo8 • 90 • updated 6 months ago by h.mon ♦ 13k
4
votes
1
answer
440
views
1
answer
Error while running rnaseq_pipeline.sh provided by hisat2
paired-end hisat2 rna-seq shell bash written 6 months ago by bioinfo8 • 90
6
votes
1
answer
1.4k
views
1
answer
TrimGalore! on multiple paired fastq files
paired-end script rna-seq trimgalore! written 18 months ago by emblake • 40 • updated 7 months ago by Biostar ♦♦ 20
2
votes
1
answer
403
views
1
answer
SAM Flags for illumina paired-end reads mapped on transcriptome
paired-end alignment sam flags transcriptome written 7 months ago by Macspider • 2.4k • updated 7 months ago by Devon Ryan ♦ 78k
2
votes
0
answers
725
views
0
answers
Trimming Overrepresented Sequences in paired-end RNA-Seq data, as underlined by FastQC.
paired-end rna-seq fastqc written 8 months ago by Shaurya Jauhari • 40 • updated 8 months ago by genomax ♦ 46k
4
votes
1
answer
1.2k
views
1
answer
Tool: pairedBamToBed12: converts paired-end BAM to BED12 format, based on bedtools
paired-end cage tool written 2.6 years ago by Charles Plessy • 2.4k
6
votes
2
answers
661
views
6 follow
2
answers
samtools view region
paired-end samtools rna-seq written 10 months ago by xd_d • 70 • updated 10 months ago by dariober ♦ 9.0k
14
votes
2
answers
788
views
5 follow
2
answers
Samtools: How can I extract properly-paired QC-passed reads instead of extracting only properly-paired?
ngs bam samtools paired-end sequencing written 10 months ago by bioinfo8 • 90
0
votes
0
answers
303
views
0
answers
TEQC (Target Enrichment Quality Control, R package) : Clarification on paired-end reads
paired-end R ngs bioconductor teqc written 10 months ago by bioinfo8 • 90
<prev • 167 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • United States, 3 minutes ago
  • United Kingdom, 4 minutes ago
  • United States, 11 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1094 users visited in the last hour