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<prev • 92 results • page 1 of 4 • next >
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Q. BioPython: CodeML FileNotFoundError: [WinError 2]
paml biopython written 7 days ago by mtbreeze • 0 • updated 6 days ago by Medhat ♦ 8.1k
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PAML needs branch labels in tree
paml newick tree written 5 weeks ago by miles.thorburn • 40 • updated 9 days ago by Biostar ♦♦ 20
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how to do a MK test analysis
mk test mcdonald-kreitman test paml written 11 days ago by Kay • 0
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Problem with CODEML parameters
molecular evolution codeml paml written 12 days ago by aeonswhisper • 0
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Issue with running Codeml using Biopython
paml python biopython codeml linux written 4 weeks ago by laurenmee17 • 0
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yn00 in PAML returns error: Error in sequence data file: E at 3 seq 1.
pal2nal phylip paml input file written 18 months ago by shreyasibiswas88 • 30 • updated 10 weeks ago by al-ash • 100
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ete3 evol doesnt work on test data
ete3 paml ete written 3 months ago by Kay • 0 • updated 3 months ago by WouterDeCoster ♦ 36k
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Help With Understanding The Output Of Codeml From The Paml Package
paml codeml selection written 8.8 years ago by Joseph Hughes • 2.7k • updated 5 months ago by RamRS ♦ 20k
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PAML NsSites sequence length influences significance?
nssites paml codeml written 5 months ago by susannak • 0
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Calculate dN/dS ratio for protein coding genes using PAML
rate anlysis paml rate analysis paml written 5 months ago by b.shrestha • 0
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HyPhy or PAML: Testing Multiple Hypotheses with the same phylogeny/alignment?
hyphy phylogeny codon sequence paml written 13 months ago by space-slash-ellipsis • 0 • updated 5 months ago by Biostar ♦♦ 20
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381
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very high maximum-likelihood dS values from PAML
dn/ds alignment paml written 14 months ago by glarue • 20
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dN/dS within and between species
phylogeny hyphy mega paml msa written 8 months ago by krc3004 • 0
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Error Running codeml
phylogeny alignment paml written 9 months ago by ammarsabir15 • 50 • updated 9 months ago by Sishuo Wang • 140
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How to deal with one-to-many orthologies in PAML
dn/ds orthology paml written 10 months ago by Solowars • 40 • updated 10 months ago by lieven.sterck ♦ 3.9k
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Get dS numbers _per branch_ with PAML codeml (or branch length estimates)
phylogeny substitution rates paml ds codeml written 2.3 years ago by BlastedBadger • 60 • updated 11 months ago by al-ash • 100
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PAML: Codeml Foreground/background branch issue
paml written 12 months ago by j.a.yearsley • 10
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CodeML 4.9e "strange: f[132] = -0.889877 very small" messages
phylogenetic paml codeml written 14 months ago by Hugo • 150
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PAML CodeMl Dn/Ds help
paml codeml written 14 months ago by mti193 • 0
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Detailed instructions for how to use PAML
file format paml dn/ds ratio written 15 months ago by dixex • 0 • updated 15 months ago by h.mon ♦ 23k
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PAMP Error: Error in sequence data file: L at 54 seq 1
paml written 15 months ago by dixex • 0
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What would be the best model to calcualte dn/ds ratio of genes of bacterial strains?
dn/ds paml codeml kaks written 16 months ago by ThulasiS • 60
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Should I average dN/dS over all CDS for a gene or consider only the longest transcript?
longest transcript average dn/ds dnds paml written 16 months ago by shreyasibiswas88 • 30
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codeml, output tree topology different from the input tree
paml codeml written 17 months ago by stolarek.ir • 570
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How much does cleandata in PAML analysis remove?
paml codeml cleandata written 18 months ago by DNAngel • 20 • updated 18 months ago by h.mon ♦ 23k
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Should I Fix Branch Length In Paml Analyses?
evolution paml selection written 5.4 years ago by qiyunzhu • 420 • updated 18 months ago by Lhl • 730
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PAML sample sizes within multiple alignment format
software phylogenetic paml baseml likelihood written 23 months ago by enrightnm • 0
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what is pairwise dN/dS used for?
gene dn/ds sequence paml written 23 months ago by dukecomeback • 40 • updated 23 months ago by Alex Reynolds ♦ 27k
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PAML and WAG+gamma model
gamma paml codeml written 2.1 years ago by martanit • 0 • updated 2.1 years ago by Biostar ♦♦ 20
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Positive Selection And Evolutionary Model Selection
paml written 4.9 years ago by Pappu • 1.9k • updated 2.4 years ago by Brice Sarver • 2.5k
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