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NM_transcript ID gene identification

refseq panther gene ontology david rna-seq written 6 months ago by Abiterkuile • 20 • updated 6 months ago by genomax ♦ 55k

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PANTHER gene ontology - is the bonferroni correction important?

panther ontology rna-seq statistics written 13 months ago by sbrown669 • 20 • updated 13 months ago by mforde84 • 1.2k

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760

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Difference GO terms Uniprot and PANTHER

geneontology panther uniprot go written 16 months ago by padgaus • 50 • updated 16 months ago by Jean-Karim Heriche ♦ 16k

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PANTHER GENE LIST

gene panther gene ontology written 17 months ago by Leite • 300

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543

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DAVID and Panther can't identify certain Uniprot Accessions

panther gene annotation david uniprot written 17 months ago by shpak.max • 0 • updated 17 months ago by Elisabeth Gasteiger • 1.5k

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1.7k

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How to interpret data from PANTHER GO?

gene panther gene ontology written 23 months ago by Leite • 300

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747

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Possible downsides for direct gene list analysis in Gene Ontology?

R panther gene ontology goseq rna-seq written 2.4 years ago by CandiceChuDVM • 1.7k • updated 2.3 years ago by Biostar ♦♦ 20

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Cuffdiff output ID list for gene ontology analysis in Panther

panther gene ontology cuffdiff rna-seq written 2.4 years ago by CandiceChuDVM • 1.7k

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Recent Replies

C: Removal of repeat and blacklist regions from ChIP-seq data by Firas • 0
Would you mind sharing the DKFZ blacklist with me as well? Many thanks. myusername[at]ymail.com
C: Bwa Mem Have Different Alignment Result When Using Different Threads by Dan Gaston ♦ 7.0k
BWA is now up to version 0.7.17, 0.7.12 was released in December of 2014. The solution is to upgr...
A: bowtie2 alignments "Error: No input read files were valid" by Devon Ryan ♦ 84k
You need the full path for each of the files separated by commas.
A: bowtie2 alignments "Error: No input read files were valid" by genomax ♦ 55k
Unless you are in `/home/luz_garcia_longoria/workspace` directory when you issue the bowtie2 comm...
A: Batch effect in RNAseq by Devon Ryan ♦ 84k
The standard methods for dealing with a batch effect are: 1. Add it to you model (e.g., in DESeq...
C: How to take input TCGA miRNA data in Limma R package for differential expression by Kevin Blighe ♦ 28k
...and you just have a single column of values? Sorry for the late follow-up - I missed your resp...
C: How to take input TCGA miRNA data in Limma R package for differential expression by pradyumna Jayaram • 20
@kevin Yes it is miRNA-seq data from TCGA
C: TCGA patient variable data dictionary by RamRS ♦ 17k
Please use the formatting bar (especially the `code` option) to present your post better. I've do...
C: Why people are not working on gene prioritization and candidate gene selection f by Kevin Blighe ♦ 28k
Yes, just having the results of differential expression is not the best. A differential expressio...
C: bwa mem low depth and fluctuating plot by ieie • 0
![depth plot][1] [1]: https://i.imgur.com/UJm72Nt.png this is the plot that I get. thanks fo...
C: bwa mem low depth and fluctuating plot by WouterDeCoster ♦ 32k
Have you considered showing us that plot?
C: Why people are not working on gene prioritization and candidate gene selection f by Devon Ryan ♦ 84k
No disagreement there, we need to fund characterization of a broader set of genes, there's a lot ...

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