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3
votes
1
answer
174
views
1
answer
How can I parse a json file from MobiDB to retrieve proteome data?
annotation database format proteins parsing written 5 weeks ago by Jason2 • 0 • updated 9 days ago by ieuangw • 0
3
votes
1
answer
208
views
1
answer
UniProtKB - mapping gene name to ID (*_HUMAN ) using python2
python api uniprot databases parsing written 9 weeks ago by jg • 0 • updated 9 weeks ago by vkkodali • 960
1
vote
1
answer
959
views
1
answer
Ensembl VEP cannot parse HGVS notation.
hgvs ensembl vep ref_seq parsing written 2.7 years ago by gmora • 20 • updated 5 months ago by zx8754 ♦ 6.5k
19
votes
2
answers
6.5k
views
5 follow
2
answers
Going From Cigar String In Sam To Genomic Coordinates?
cigar alignment sam parsing written 8.6 years ago by User 9996 • 800 • updated 5 months ago by RamRS ♦ 20k
19
votes
6
answers
6.7k
views
10 follow
6
answers
How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
pdb java coordinates structure parsing written 8.6 years ago by Jeremiahloh • 30 • updated 5 months ago by RamRS ♦ 20k
4
votes
2
answers
4.8k
views
2
answers
Efficient Fastq Parsing And Manipulation In Java (With Or Without Biojava)
biojava fastq java parsing written 8.6 years ago by Michael Dondrup ♦ 45k • updated 5 months ago by RamRS ♦ 20k
14
votes
3
answers
2.8k
views
3
answers
Parsing Custom Snp Info File In Python
python file parsing written 8.7 years ago by Eric Normandeau ♦ 10k • updated 5 months ago by RamRS ♦ 20k
2
votes
1
answer
3.0k
views
1
answer
Clustalw Multiple Sequence Alignment Parsing
parsing written 8.8 years ago by Thaman • 3.2k • updated 5 months ago by RamRS ♦ 20k
100
votes
7
answers
78k
views
26 follow
7
answers
Correct Way To Parse A Fasta File In Python
fasta python parsing written 8.9 years ago by Eric Normandeau ♦ 10k • updated 5 months ago by RamRS ♦ 20k
0
votes
0
answers
186
views
0
answers
Parsing online blast results using NCBIXML returns 50 alignments per Blast.Record object
python parsing ncbixml biopython written 7 months ago by aleksanderczeszyk • 0
0
votes
0
answers
262
views
0
answers
Masking and Parsing problem in Standalone BLAST 2.7.1?
makeblastdb masking blastdbcmd ncbi blast parsing written 7 months ago by kabir.deb0353 • 0
7
votes
2
answers
7.4k
views
10 follow
2
answers
Downloading Data From Mg-Rast
parsing written 5.0 years ago by bioinfo • 680 • updated 7 months ago by Dattatray Mongad • 240
5
votes
2
answers
446
views
2
answers
Extracting Sub-cellular location from Uniprot into tabular format
swissprot uniprot parsing written 8 months ago by Michael Dondrup ♦ 45k • updated 7 months ago by Elisabeth Gasteiger • 1.5k
3
votes
0
answers
394
views
0
answers
SAM CIGAR parsing and position counter in R
cigar parsing sam R written 9 months ago by niu.shengyong • 30
3
votes
0
answers
465
views
0
answers
using awk to extract a specific pattern
gff awk extract parsing written 10 months ago by Darill • 20
3
votes
2
answers
1.9k
views
2
answers
Problem parsing interval list file to GenomicsDBImport in GATK4
gatk parsing interval gvcf written 14 months ago by Yatros • 10 • updated 10 months ago by prnsml • 0
1
vote
2
answers
599
views
2
answers
How to parse a pubmed abstract that contains html tags or Unicode in python?
html python pubmed xml parsing written 10 months ago by aqsaawan.459 • 0 • updated 10 months ago by Pierre Lindenbaum ♦ 116k
0
votes
0
answers
328
views
0
answers
RNA Structure prediction using context free grammar
structure prediction rna grammar parsing written 10 months ago by maria.sedsvit • 0
1
vote
1
answer
711
views
1
answer
convert CSQ and ANN fields to a tab delimitet document with its headers
vcf perl ann csq parsing written 13 months ago by paumarc • 10 • updated 13 months ago by Pierre Lindenbaum ♦ 116k
8
votes
2
answers
4.5k
views
2
answers
Syntax For Neighborsearch Module In Biopython
pdb biopython parsing written 8.6 years ago by satsurae • 120 • updated 13 months ago by jma.bullock • 0
0
votes
0
answers
643
views
0
answers
Pathview parsing error
R pathview parsing written 15 months ago by ladypurrsia • 20
3
votes
2
answers
679
views
6 follow
2
answers
Parsing fasta file using seqIO
fasta sequence biopython parsing written 15 months ago by jayasrivatsava • 0 • updated 15 months ago by jrj.healey ♦ 10k
3
votes
2
answers
964
views
2
answers
parse nxml file from pubmed
parsing nxml pubmed written 16 months ago by Quak • 290 • updated 16 months ago by Pierre Lindenbaum ♦ 116k
0
votes
1
answer
445
views
1
answer
How I get mRNA accession no if I have gene name and location with the help of perl
mrna perl mirna parsing written 17 months ago by anshulmbi • 0 • updated 17 months ago by Russ • 440
2
votes
1
answer
585
views
1
answer
Trimming local GB file with Biopython
python biopython genbank parsing written 17 months ago by 13dsc • 0 • updated 17 months ago by jrj.healey ♦ 10k
1
vote
0
answers
542
views
0
answers
From sam data, how do I tell from which fastq file each read came from?
bowtie2 sam read file origin parsing written 19 months ago by bitjunkie • 40
21
votes
5
answers
11k
views
9 follow
5
answers
How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb perl coordinates protein parsing written 7.9 years ago by Sakshi • 20 • updated 21 months ago by Biostar ♦♦ 20
2
votes
1
answer
503
views
1
answer
genome features and sequence parsing
genome cds sequence parsing written 22 months ago by lessismore • 570 • updated 22 months ago by Macspider • 2.7k
5
votes
2
answers
1.7k
views
2
answers
Help extracting the taxonomy for a file containing a list of accession numbers from Genbank
gene sequence taxonomy parsing written 3.0 years ago by infenit101 • 10 • updated 23 months ago by mavino • 10
8
votes
3
answers
1.4k
views
7 follow
3
answers
Parsing FASTA file using class in Python
fasta python class biopython parsing written 23 months ago by mrth • 30 • updated 23 months ago by Matt Shirley ♦ 8.8k
<prev • 156 results • page 1 of 6 • next >
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