Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: parsing • reset
or   Classic search
<prev • 154 results • page 1 of 6 • next >
1
vote
1
answer
887
views
1
answer
Ensembl VEP cannot parse HGVS notation.
hgvs ensembl vep ref_seq parsing written 2.5 years ago by gmora • 20 • updated 7 weeks ago by zx8754 ♦ 5.6k
19
votes
2
answers
6.4k
views
5 follow
2
answers
Going From Cigar String In Sam To Genomic Coordinates?
cigar alignment sam parsing written 8.3 years ago by User 9996 • 790 • updated 9 weeks ago by RamRS ♦ 19k
19
votes
6
answers
6.5k
views
10 follow
6
answers
How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
pdb java coordinates structure parsing written 8.4 years ago by Jeremiahloh • 30 • updated 9 weeks ago by RamRS ♦ 19k
4
votes
2
answers
4.7k
views
2
answers
Efficient Fastq Parsing And Manipulation In Java (With Or Without Biojava)
biojava fastq java parsing written 8.4 years ago by Michael Dondrup ♦ 45k • updated 9 weeks ago by RamRS ♦ 19k
14
votes
3
answers
2.6k
views
3
answers
Parsing Custom Snp Info File In Python
python file parsing written 8.4 years ago by Eric Normandeau ♦ 10.0k • updated 9 weeks ago by RamRS ♦ 19k
2
votes
1
answer
2.9k
views
1
answer
Clustalw Multiple Sequence Alignment Parsing
parsing written 8.5 years ago by Thaman • 3.2k • updated 9 weeks ago by RamRS ♦ 19k
96
votes
7
answers
73k
views
26 follow
7
answers
Correct Way To Parse A Fasta File In Python
fasta python parsing written 8.6 years ago by Eric Normandeau ♦ 10.0k • updated 9 weeks ago by RamRS ♦ 19k
0
votes
0
answers
145
views
0
answers
Parsing online blast results using NCBIXML returns 50 alignments per Blast.Record object
python parsing ncbixml biopython written 3 months ago by aleksanderczeszyk • 0
0
votes
0
answers
175
views
0
answers
Masking and Parsing problem in Standalone BLAST 2.7.1?
makeblastdb masking blastdbcmd ncbi blast parsing written 4 months ago by kabir.deb0353 • 0
7
votes
2
answers
6.9k
views
10 follow
2
answers
Downloading Data From Mg-Rast
parsing written 4.7 years ago by bioinfo • 680 • updated 4 months ago by Dattatray Mongad • 200
5
votes
2
answers
332
views
2
answers
Extracting Sub-cellular location from Uniprot into tabular format
swissprot uniprot parsing written 4 months ago by Michael Dondrup ♦ 45k • updated 4 months ago by Elisabeth Gasteiger • 1.5k
3
votes
0
answers
291
views
0
answers
SAM CIGAR parsing and position counter in R
cigar parsing sam R written 6 months ago by niu.shengyong • 30
3
votes
0
answers
386
views
0
answers
using awk to extract a specific pattern
gff awk extract parsing written 6 months ago by Toto26 • 10
3
votes
2
answers
1.5k
views
2
answers
Problem parsing interval list file to GenomicsDBImport in GATK4
gatk parsing interval gvcf written 11 months ago by Yatros • 10 • updated 7 months ago by prnsml • 0
1
vote
2
answers
452
views
2
answers
How to parse a pubmed abstract that contains html tags or Unicode in python?
html python pubmed xml parsing written 7 months ago by aqsaawan.459 • 0 • updated 7 months ago by Pierre Lindenbaum ♦ 114k
0
votes
0
answers
258
views
0
answers
RNA Structure prediction using context free grammar
structure prediction rna grammar parsing written 7 months ago by maria.sedsvit • 0
1
vote
1
answer
501
views
1
answer
convert CSQ and ANN fields to a tab delimitet document with its headers
vcf perl ann csq parsing written 10 months ago by paumarc • 10 • updated 10 months ago by Pierre Lindenbaum ♦ 114k
8
votes
2
answers
4.3k
views
2
answers
Syntax For Neighborsearch Module In Biopython
pdb biopython parsing written 8.3 years ago by satsurae • 120 • updated 10 months ago by jma.bullock • 0
0
votes
0
answers
540
views
0
answers
Pathview parsing error
R pathview parsing written 12 months ago by ladypurrsia • 20
3
votes
2
answers
581
views
6 follow
2
answers
Parsing fasta file using seqIO
fasta sequence biopython parsing written 12 months ago by jayasrivatsava • 0 • updated 12 months ago by jrj.healey ♦ 8.4k
3
votes
2
answers
818
views
2
answers
parse nxml file from pubmed
parsing nxml pubmed written 12 months ago by Quak • 270 • updated 12 months ago by Pierre Lindenbaum ♦ 114k
0
votes
1
answer
384
views
1
answer
How I get mRNA accession no if I have gene name and location with the help of perl
mrna perl mirna parsing written 14 months ago by anshulmbi • 0 • updated 13 months ago by Russ • 420
2
votes
1
answer
500
views
1
answer
Trimming local GB file with Biopython
python biopython genbank parsing written 13 months ago by 13dsc • 0 • updated 13 months ago by jrj.healey ♦ 8.4k
1
vote
0
answers
461
views
0
answers
From sam data, how do I tell from which fastq file each read came from?
bowtie2 sam read file origin parsing written 16 months ago by bitjunkie • 40
21
votes
5
answers
11k
views
9 follow
5
answers
How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb perl coordinates protein parsing written 7.6 years ago by Sakshi • 20 • updated 18 months ago by Biostar ♦♦ 20
2
votes
1
answer
443
views
1
answer
genome features and sequence parsing
genome cds sequence parsing written 18 months ago by lessismore • 520 • updated 18 months ago by Macspider • 2.6k
5
votes
2
answers
1.6k
views
2
answers
Help extracting the taxonomy for a file containing a list of accession numbers from Genbank
gene sequence taxonomy parsing written 2.7 years ago by infenit101 • 10 • updated 20 months ago by mavino • 10
8
votes
3
answers
1.1k
views
7 follow
3
answers
Parsing FASTA file using class in Python
fasta python class biopython parsing written 20 months ago by mrth • 30 • updated 20 months ago by Matt Shirley ♦ 8.7k
19
votes
6
answers
3.4k
views
13 follow
6
answers
Parse Fastq File - Pad Reads With N'S
fastq parsing written 6.8 years ago by Steffi • 540 • updated 20 months ago by infenit101 • 10
2
votes
1
answer
585
views
1
answer
parsing tabular blast output
tabular blast parsing written 21 months ago by nh75 • 0 • updated 21 months ago by Pierre Lindenbaum ♦ 114k
<prev • 154 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • EMBL-EBI, just now
  • United Kingdom, just now
  • Center for Geogenetik Københavns Universitet, 1 minute ago
  • Oslo, 2 minutes ago
  • France, 3 minutes ago
  • Brazil, 3 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2145 users visited in the last hour