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<prev • 161 results • page 1 of 6 • next >
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News: UniProt: Functional annotation of different gene products in UniProtKB/Swiss-Prot
format news uniprot xml protein parsing written 4 months ago by Elisabeth Gasteiger • 1.7k
3
votes
1
answer
172
views
1
answer
News: UniProt: Change of FT and CC section in UniProtKB text format
news format protein uniprot parsing written 4 months ago by Elisabeth Gasteiger • 1.7k
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156
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NCBI Taxon ID to IMG Genome IDs
bioinformatics parsing html parsing ids written 6 months ago by Mohak • 10
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votes
1
answer
1.1k
views
1
answer
Pathview parsing error
R pathview parsing written 2.2 years ago by ladypurrsia • 40 • updated 6 months ago by SMK • 1.9k
1
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2
answers
226
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2
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Parsing VCF Data
vcf chromosome tag parsing written 6 months ago by gcooper1245 • 10 • updated 6 months ago by RamRS ♦ 25k
9
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2
answers
305
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6 follow
2
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Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 7 months ago by alexis.groppi • 30
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1
answer
471
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1
answer
How can I parse a json file from MobiDB to retrieve proteome data?
annotation database format proteins parsing written 12 months ago by Jason2 • 0 • updated 11 months ago by ieuangw • 0
3
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1
answer
562
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1
answer
UniProtKB - mapping gene name to ID (*_HUMAN ) using python2
python api uniprot databases parsing written 13 months ago by jg • 0 • updated 13 months ago by vkkodali • 1.6k
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1
answer
1.2k
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1
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Ensembl VEP cannot parse HGVS notation.
hgvs ensembl vep ref_seq parsing written 3.6 years ago by gmora • 20 • updated 16 months ago by zx8754 ♦ 8.8k
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2
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5 follow
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Going From Cigar String In Sam To Genomic Coordinates?
cigar alignment sam parsing written 9.5 years ago by User 9996 • 810 • updated 16 months ago by RamRS ♦ 25k
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6
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7.2k
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10 follow
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How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
pdb java coordinates structure parsing written 9.5 years ago by Jeremiahloh • 30 • updated 16 months ago by RamRS ♦ 25k
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2
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5.3k
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2
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Efficient Fastq Parsing And Manipulation In Java (With Or Without Biojava)
biojava fastq java parsing written 9.6 years ago by Michael Dondrup ♦ 47k • updated 16 months ago by RamRS ♦ 25k
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3
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3.1k
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3
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Parsing Custom Snp Info File In Python
python file parsing written 9.6 years ago by Eric Normandeau ♦ 10k • updated 16 months ago by RamRS ♦ 25k
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1
answer
3.3k
views
1
answer
Clustalw Multiple Sequence Alignment Parsing
parsing written 9.7 years ago by Thaman • 3.2k • updated 16 months ago by RamRS ♦ 25k
107
votes
7
answers
94k
views
28 follow
7
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Correct Way To Parse A Fasta File In Python
fasta python parsing written 9.8 years ago by Eric Normandeau ♦ 10k • updated 16 months ago by RamRS ♦ 25k
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332
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Parsing online blast results using NCBIXML returns 50 alignments per Blast.Record object
python parsing ncbixml biopython written 18 months ago by aleksanderczeszyk • 0
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556
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Masking and Parsing problem in Standalone BLAST 2.7.1?
makeblastdb masking blastdbcmd ncbi blast parsing written 18 months ago by kabir.deb0353 • 0
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2
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9.1k
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10 follow
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Downloading Data From Mg-Rast
parsing written 5.9 years ago by bioinfo • 740 • updated 18 months ago by Dattatray Mongad • 340
5
votes
2
answers
921
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2
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Extracting Sub-cellular location from Uniprot into tabular format
swissprot uniprot parsing written 19 months ago by Michael Dondrup ♦ 47k • updated 18 months ago by Elisabeth Gasteiger • 1.7k
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794
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SAM CIGAR parsing and position counter in R
cigar parsing sam R written 20 months ago by niu.shengyong • 50
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answers
747
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using awk to extract a specific pattern
gff awk extract parsing written 21 months ago by Darill • 40
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2
answers
3.1k
views
2
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Problem parsing interval list file to GenomicsDBImport in GATK4
gatk parsing interval gvcf written 2.1 years ago by Yatros • 10 • updated 21 months ago by prnsml • 0
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2
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1.1k
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2
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How to parse a pubmed abstract that contains html tags or Unicode in python?
html python pubmed xml parsing written 21 months ago by aqsaawan.459 • 0 • updated 21 months ago by Pierre Lindenbaum ♦ 125k
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590
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RNA Structure prediction using context free grammar
structure prediction rna grammar parsing written 21 months ago by maria.sedsvit • 0
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1
answer
1.4k
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1
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convert CSQ and ANN fields to a tab delimitet document with its headers
vcf perl ann csq parsing written 2.0 years ago by paumarc • 10 • updated 2.0 years ago by Pierre Lindenbaum ♦ 125k
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2
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5.1k
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2
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Syntax For Neighborsearch Module In Biopython
pdb biopython parsing written 9.5 years ago by satsurae • 120 • updated 2.0 years ago by jma.bullock • 0
3
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2
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1.0k
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6 follow
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Parsing fasta file using seqIO
fasta sequence biopython parsing written 2.2 years ago by jayasrivatsava • 0 • updated 2.2 years ago by Joe ♦ 15k
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2
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1.5k
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2
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parse nxml file from pubmed
parsing nxml pubmed written 2.2 years ago by Quak • 310 • updated 2.2 years ago by Pierre Lindenbaum ♦ 125k
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1
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686
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1
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How I get mRNA accession no if I have gene name and location with the help of perl
mrna perl mirna parsing written 2.3 years ago by anshulmbi • 0 • updated 2.3 years ago by Russ • 460
3
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1
answer
798
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1
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Trimming local GB file with Biopython
python biopython genbank parsing written 2.3 years ago by 13dsc • 0 • updated 2.3 years ago by Joe ♦ 15k
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