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9
votes
2
answers
106
views
6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 9 hours ago by alexis.groppi • 30
0
votes
0
answers
805
views
0
answers
Pathview parsing error
R pathview parsing written 19 months ago by ladypurrsia • 20 • updated 20 days ago by gaspilleura • 0
3
votes
1
answer
270
views
1
answer
How can I parse a json file from MobiDB to retrieve proteome data?
annotation database format proteins parsing written 5 months ago by Jason2 • 0 • updated 4 months ago by ieuangw • 0
3
votes
1
answer
325
views
1
answer
UniProtKB - mapping gene name to ID (*_HUMAN ) using python2
python api uniprot databases parsing written 6 months ago by jg • 0 • updated 6 months ago by vkkodali • 1.1k
1
vote
1
answer
1.1k
views
1
answer
Ensembl VEP cannot parse HGVS notation.
hgvs ensembl vep ref_seq parsing written 3.1 years ago by gmora • 20 • updated 9 months ago by zx8754 ♦ 7.5k
19
votes
2
answers
6.8k
views
5 follow
2
answers
Going From Cigar String In Sam To Genomic Coordinates?
cigar alignment sam parsing written 8.9 years ago by User 9996 • 800 • updated 9 months ago by RamRS ♦ 21k
19
votes
6
answers
6.9k
views
10 follow
6
answers
How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
pdb java coordinates structure parsing written 9.0 years ago by Jeremiahloh • 30 • updated 9 months ago by RamRS ♦ 21k
4
votes
2
answers
5.0k
views
2
answers
Efficient Fastq Parsing And Manipulation In Java (With Or Without Biojava)
biojava fastq java parsing written 9.0 years ago by Michael Dondrup ♦ 46k • updated 9 months ago by RamRS ♦ 21k
14
votes
3
answers
2.9k
views
3
answers
Parsing Custom Snp Info File In Python
python file parsing written 9.0 years ago by Eric Normandeau ♦ 10k • updated 9 months ago by RamRS ♦ 21k
2
votes
1
answer
3.1k
views
1
answer
Clustalw Multiple Sequence Alignment Parsing
parsing written 9.1 years ago by Thaman • 3.2k • updated 9 months ago by RamRS ♦ 21k
107
votes
7
answers
84k
views
28 follow
7
answers
Correct Way To Parse A Fasta File In Python
fasta python parsing written 9.2 years ago by Eric Normandeau ♦ 10k • updated 9 months ago by RamRS ♦ 21k
0
votes
0
answers
237
views
0
answers
Parsing online blast results using NCBIXML returns 50 alignments per Blast.Record object
python parsing ncbixml biopython written 10 months ago by aleksanderczeszyk • 0
0
votes
0
answers
375
views
0
answers
Masking and Parsing problem in Standalone BLAST 2.7.1?
makeblastdb masking blastdbcmd ncbi blast parsing written 11 months ago by kabir.deb0353 • 0
7
votes
2
answers
8.0k
views
10 follow
2
answers
Downloading Data From Mg-Rast
parsing written 5.3 years ago by bioinfo • 710 • updated 11 months ago by Dattatray Mongad • 290
5
votes
2
answers
618
views
2
answers
Extracting Sub-cellular location from Uniprot into tabular format
swissprot uniprot parsing written 11 months ago by Michael Dondrup ♦ 46k • updated 11 months ago by Elisabeth Gasteiger • 1.6k
3
votes
0
answers
525
views
0
answers
SAM CIGAR parsing and position counter in R
cigar parsing sam R written 13 months ago by niu.shengyong • 30
3
votes
0
answers
566
views
0
answers
using awk to extract a specific pattern
gff awk extract parsing written 14 months ago by Darill • 30
3
votes
2
answers
2.4k
views
2
answers
Problem parsing interval list file to GenomicsDBImport in GATK4
gatk parsing interval gvcf written 18 months ago by Yatros • 10 • updated 14 months ago by prnsml • 0
1
vote
2
answers
787
views
2
answers
How to parse a pubmed abstract that contains html tags or Unicode in python?
html python pubmed xml parsing written 14 months ago by aqsaawan.459 • 0 • updated 14 months ago by Pierre Lindenbaum ♦ 120k
0
votes
0
answers
421
views
0
answers
RNA Structure prediction using context free grammar
structure prediction rna grammar parsing written 14 months ago by maria.sedsvit • 0
1
vote
1
answer
962
views
1
answer
convert CSQ and ANN fields to a tab delimitet document with its headers
vcf perl ann csq parsing written 17 months ago by paumarc • 10 • updated 17 months ago by Pierre Lindenbaum ♦ 120k
8
votes
2
answers
4.8k
views
2
answers
Syntax For Neighborsearch Module In Biopython
pdb biopython parsing written 8.9 years ago by satsurae • 120 • updated 17 months ago by jma.bullock • 0
3
votes
2
answers
790
views
6 follow
2
answers
Parsing fasta file using seqIO
fasta sequence biopython parsing written 19 months ago by jayasrivatsava • 0 • updated 19 months ago by jrj.healey ♦ 12k
3
votes
2
answers
1.2k
views
2
answers
parse nxml file from pubmed
parsing nxml pubmed written 20 months ago by Quak • 300 • updated 20 months ago by Pierre Lindenbaum ♦ 120k
0
votes
1
answer
540
views
1
answer
How I get mRNA accession no if I have gene name and location with the help of perl
mrna perl mirna parsing written 21 months ago by anshulmbi • 0 • updated 21 months ago by Russ • 450
3
votes
1
answer
668
views
1
answer
Trimming local GB file with Biopython
python biopython genbank parsing written 21 months ago by 13dsc • 0 • updated 21 months ago by jrj.healey ♦ 12k
1
vote
0
answers
614
views
0
answers
From sam data, how do I tell from which fastq file each read came from?
bowtie2 sam read file origin parsing written 23 months ago by bitjunkie • 40
21
votes
5
answers
12k
views
9 follow
5
answers
How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb perl coordinates protein parsing written 8.2 years ago by Sakshi • 20 • updated 2.1 years ago by Biostar ♦♦ 20
2
votes
1
answer
595
views
1
answer
genome features and sequence parsing
genome cds sequence parsing written 2.1 years ago by lessismore • 630 • updated 2.1 years ago by Macspider • 2.8k
5
votes
2
answers
1.8k
views
2
answers
Help extracting the taxonomy for a file containing a list of accession numbers from Genbank
gene sequence taxonomy parsing written 3.3 years ago by infenit101 • 20 • updated 2.2 years ago by mavino • 10
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