Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: parsing • reset
or   Classic search
<prev • 154 results • page 1 of 6 • next >
19
votes
2
answers
6.2k
views
5 follow
2
answers
Going From Cigar String In Sam To Genomic Coordinates?
cigar alignment sam parsing written 8.2 years ago by User 9996 • 770 • updated 9 days ago by Ram ♦ 17k
19
votes
6
answers
6.3k
views
10 follow
6
answers
How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
pdb java coordinates structure parsing written 8.2 years ago by Jeremiahloh • 30 • updated 9 days ago by Ram ♦ 17k
4
votes
2
answers
4.6k
views
2
answers
Efficient Fastq Parsing And Manipulation In Java (With Or Without Biojava)
biojava fastq java parsing written 8.2 years ago by Michael Dondrup ♦ 44k • updated 10 days ago by Ram ♦ 17k
14
votes
3
answers
2.6k
views
3
answers
Parsing Custom Snp Info File In Python
python file parsing written 8.3 years ago by Eric Normandeau ♦ 9.9k • updated 10 days ago by Ram ♦ 17k
2
votes
1
answer
2.8k
views
1
answer
Clustalw Multiple Sequence Alignment Parsing
parsing written 8.3 years ago by Thaman • 3.2k • updated 12 days ago by Ram ♦ 17k
95
votes
7
answers
70k
views
26 follow
7
answers
Correct Way To Parse A Fasta File In Python
fasta python parsing written 8.4 years ago by Eric Normandeau ♦ 9.9k • updated 12 days ago by Ram ♦ 17k
0
votes
0
answers
125
views
0
answers
Parsing online blast results using NCBIXML returns 50 alignments per Blast.Record object
python parsing ncbixml biopython written 8 weeks ago by aleksanderczeszyk • 0
0
votes
0
answers
127
views
0
answers
Masking and Parsing problem in Standalone BLAST 2.7.1?
makeblastdb masking blastdbcmd ncbi blast parsing written 10 weeks ago by kabir.deb0353 • 0
7
votes
2
answers
6.7k
views
10 follow
2
answers
Downloading Data From Mg-Rast
parsing written 4.5 years ago by bioinfo • 680 • updated 10 weeks ago by doctor.dee005 • 130
5
votes
2
answers
278
views
2
answers
Extracting Sub-cellular location from Uniprot into tabular format
swissprot uniprot parsing written 12 weeks ago by Michael Dondrup ♦ 44k • updated 11 weeks ago by Elisabeth Gasteiger • 1.5k
3
votes
0
answers
216
views
0
answers
SAM CIGAR parsing and position counter in R
cigar parsing sam R written 4 months ago by niu.shengyong • 30
3
votes
0
answers
320
views
0
answers
using awk to extract a specific pattern
gff awk extract parsing written 5 months ago by Toto26 • 10
3
votes
2
answers
1.3k
views
2
answers
Problem parsing interval list file to GenomicsDBImport in GATK4
gatk parsing interval gvcf written 9 months ago by Yatros • 10 • updated 5 months ago by prnsml • 0
1
vote
2
answers
363
views
2
answers
How to parse a pubmed abstract that contains html tags or Unicode in python?
html python pubmed xml parsing written 5 months ago by aqsaawan.459 • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 112k
0
votes
0
answers
227
views
0
answers
RNA Structure prediction using context free grammar
structure prediction rna grammar parsing written 5 months ago by maria.sedsvit • 0
1
vote
1
answer
401
views
1
answer
convert CSQ and ANN fields to a tab delimitet document with its headers
vcf perl ann csq parsing written 8 months ago by paumarc • 0 • updated 8 months ago by Pierre Lindenbaum ♦ 112k
8
votes
2
answers
4.2k
views
2
answers
Syntax For Neighborsearch Module In Biopython
pdb biopython parsing written 8.2 years ago by satsurae • 120 • updated 8 months ago by jma.bullock • 0
0
votes
0
answers
462
views
0
answers
Pathview parsing error
R pathview parsing written 10 months ago by ladypurrsia • 20
3
votes
2
answers
525
views
6 follow
2
answers
Parsing fasta file using seqIO
fasta sequence biopython parsing written 10 months ago by jayasrivatsava • 0 • updated 10 months ago by jrj.healey ♦ 6.7k
3
votes
2
answers
704
views
2
answers
parse nxml file from pubmed
parsing nxml pubmed written 11 months ago by Quak • 270 • updated 11 months ago by Pierre Lindenbaum ♦ 112k
0
votes
1
answer
349
views
1
answer
How I get mRNA accession no if I have gene name and location with the help of perl
mrna perl mirna parsing written 12 months ago by anshulmbi • 0 • updated 12 months ago by Russ • 320
2
votes
1
answer
449
views
1
answer
Trimming local GB file with Biopython
python biopython genbank parsing written 12 months ago by 13dsc • 0 • updated 12 months ago by jrj.healey ♦ 6.7k
1
vote
0
answers
425
views
0
answers
From sam data, how do I tell from which fastq file each read came from?
bowtie2 sam read file origin parsing written 14 months ago by bitjunkie • 40
21
votes
5
answers
11k
views
9 follow
5
answers
How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb perl coordinates protein parsing written 7.5 years ago by Sakshi • 20 • updated 16 months ago by Biostar ♦♦ 20
2
votes
1
answer
408
views
1
answer
genome features and sequence parsing
genome cds sequence parsing written 17 months ago by lessismore • 490 • updated 17 months ago by Macspider • 2.5k
5
votes
2
answers
1.5k
views
2
answers
Help extracting the taxonomy for a file containing a list of accession numbers from Genbank
gene sequence taxonomy parsing written 2.5 years ago by infenit101 • 10 • updated 18 months ago by mavino • 10
8
votes
3
answers
1.0k
views
7 follow
3
answers
Parsing FASTA file using class in Python
fasta python class biopython parsing written 18 months ago by mrth • 30 • updated 18 months ago by Matt Shirley ♦ 8.6k
19
votes
6
answers
3.3k
views
13 follow
6
answers
Parse Fastq File - Pad Reads With N'S
fastq parsing written 6.6 years ago by Steffi • 540 • updated 19 months ago by infenit101 • 10
2
votes
1
answer
520
views
1
answer
parsing tabular blast output
tabular blast parsing written 19 months ago by nh75 • 0 • updated 19 months ago by Pierre Lindenbaum ♦ 112k
2
votes
0
answers
720
views
0
answers
parsing only 100% identical hits out of BLAST tab
tabular blast parsing written 19 months ago by jrj.healey ♦ 6.7k • updated 19 months ago by Biostar ♦♦ 20
<prev • 154 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • Germany, just now
  • Freiburg, Germany, just now
  • Pondicherry University, 1 minute ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1669 users visited in the last hour