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conservative position extraction
consensus conservative fastq sequence parsing written 20 days ago by gatiyatov • 0 • updated 20 days ago by JC ♦ 10k
1
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0
answers
108
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0
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Get duplicate GO ids
biopython genbank parsing written 3 months ago by iCosmoso • 0
0
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0
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200
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0
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News: UniProt: Functional annotation of different gene products in UniProtKB/Swiss-Prot
format news uniprot xml protein parsing written 8 months ago by Elisabeth Gasteiger • 1.7k
3
votes
1
answer
308
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1
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News: UniProt: Change of FT and CC section in UniProtKB text format
news format protein uniprot parsing written 8 months ago by Elisabeth Gasteiger • 1.7k
1
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0
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247
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0
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NCBI Taxon ID to IMG Genome IDs
bioinformatics parsing html parsing ids written 10 months ago by Mohak • 10
2
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1
answer
1.3k
views
1
answer
Pathview parsing error
R pathview parsing written 2.5 years ago by ladypurrsia • 40 • updated 10 months ago by SMK • 1.9k
1
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2
answers
299
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2
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Parsing VCF Data
vcf chromosome tag parsing written 11 months ago by gcooper1245 • 10 • updated 11 months ago by RamRS ♦ 27k
9
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2
answers
413
views
6 follow
2
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Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 11 months ago by alexis.groppi • 30
3
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1
answer
596
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1
answer
How can I parse a json file from MobiDB to retrieve proteome data?
annotation database format proteins parsing written 16 months ago by Jason2 • 0 • updated 15 months ago by ieuangw • 0
3
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1
answer
716
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1
answer
UniProtKB - mapping gene name to ID (*_HUMAN ) using python2
python api uniprot databases parsing written 17 months ago by jg • 0 • updated 17 months ago by vkkodali • 2.0k
1
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1
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1.3k
views
1
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Ensembl VEP cannot parse HGVS notation.
hgvs ensembl vep ref_seq parsing written 4.0 years ago by gmora • 20 • updated 20 months ago by zx8754 ♦ 9.2k
20
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2
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7.4k
views
5 follow
2
answers
Going From Cigar String In Sam To Genomic Coordinates?
cigar alignment sam parsing written 9.9 years ago by User 9996 • 810 • updated 20 months ago by RamRS ♦ 27k
19
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6
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7.4k
views
10 follow
6
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How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
pdb java coordinates structure parsing written 9.9 years ago by Jeremiahloh • 30 • updated 20 months ago by RamRS ♦ 27k
4
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2
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5.5k
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2
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Efficient Fastq Parsing And Manipulation In Java (With Or Without Biojava)
biojava fastq java parsing written 9.9 years ago by Michael Dondrup ♦ 47k • updated 20 months ago by RamRS ♦ 27k
14
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3
answers
3.2k
views
3
answers
Parsing Custom Snp Info File In Python
python file parsing written 10.0 years ago by Eric Normandeau ♦ 10k • updated 20 months ago by RamRS ♦ 27k
2
votes
1
answer
3.5k
views
1
answer
Clustalw Multiple Sequence Alignment Parsing
parsing written 10.0 years ago by Thaman • 3.2k • updated 20 months ago by RamRS ♦ 27k
108
votes
7
answers
101k
views
28 follow
7
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Correct Way To Parse A Fasta File In Python
fasta python parsing written 10.1 years ago by Eric Normandeau ♦ 10k • updated 20 months ago by RamRS ♦ 27k
0
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403
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Parsing online blast results using NCBIXML returns 50 alignments per Blast.Record object
python parsing ncbixml biopython written 22 months ago by aleksanderczeszyk • 0
0
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0
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648
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0
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Masking and Parsing problem in Standalone BLAST 2.7.1?
makeblastdb masking blastdbcmd ncbi blast parsing written 22 months ago by kabir.deb0353 • 10
7
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2
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9.8k
views
11 follow
2
answers
Downloading Data From Mg-Rast
parsing written 6.2 years ago by bioinfo • 740 • updated 23 months ago by Dattatray Mongad • 350
5
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2
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1.2k
views
2
answers
Extracting Sub-cellular location from Uniprot into tabular format
swissprot uniprot parsing written 23 months ago by Michael Dondrup ♦ 47k • updated 23 months ago by Elisabeth Gasteiger • 1.7k
3
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0
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921
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0
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SAM CIGAR parsing and position counter in R
cigar parsing sam R written 2.0 years ago by niu.shengyong • 60
3
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0
answers
832
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0
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using awk to extract a specific pattern
gff awk extract parsing written 2.1 years ago by Darill • 40
3
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2
answers
3.5k
views
2
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Problem parsing interval list file to GenomicsDBImport in GATK4
gatk parsing interval gvcf written 2.4 years ago by Yatros • 10 • updated 2.1 years ago by prnsml • 0
1
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2
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1.3k
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2
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How to parse a pubmed abstract that contains html tags or Unicode in python?
html python pubmed xml parsing written 2.1 years ago by aqsaawan.459 • 0 • updated 2.1 years ago by Pierre Lindenbaum ♦ 128k
0
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0
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658
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0
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RNA Structure prediction using context free grammar
structure prediction rna grammar parsing written 2.2 years ago by maria.sedsvit • 0
4
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1
answer
1.6k
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5 follow
1
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convert CSQ and ANN fields to a tab delimitet document with its headers
vcf perl ann csq parsing written 2.4 years ago by paumarc • 10 • updated 2.4 years ago by Pierre Lindenbaum ♦ 128k
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2
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5.3k
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2
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Syntax For Neighborsearch Module In Biopython
pdb biopython parsing written 9.8 years ago by satsurae • 120 • updated 2.4 years ago by jma.bullock • 0
3
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2
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1.1k
views
6 follow
2
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Parsing fasta file using seqIO
fasta sequence biopython parsing written 2.5 years ago by jayasrivatsava • 0 • updated 2.5 years ago by Joe ♦ 16k
3
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2
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1.6k
views
2
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parse nxml file from pubmed
parsing nxml pubmed written 2.6 years ago by Quak • 350 • updated 2.6 years ago by Pierre Lindenbaum ♦ 128k
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