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3
votes
0
answers
167
views
0
answers
using awk to extract a specific pattern
gff awk extract parsing written 6 days ago by Toto26 • 10
3
votes
2
answers
603
views
2
answers
Problem parsing interval list file to GenomicsDBImport in GATK4
gatk parsing interval gvcf written 4 months ago by Yatros • 10 • updated 9 days ago by prnsml • 0
1
vote
2
answers
130
views
2
answers
How to parse a pubmed abstract that contains html tags or Unicode in python?
html python pubmed xml parsing written 22 days ago by aqsaawan.459 • 0 • updated 22 days ago by Pierre Lindenbaum ♦ 106k
0
votes
0
answers
108
views
0
answers
RNA Structure prediction using context free grammar
structure prediction rna grammar parsing written 26 days ago by maria.sedsvit • 0
1
vote
1
answer
198
views
1
answer
convert CSQ and ANN fields to a tab delimitet document with its headers
vcf perl ann csq parsing written 3 months ago by paumarc • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 106k
8
votes
2
answers
3.8k
views
2
answers
Syntax For Neighborsearch Module In Biopython
pdb biopython parsing written 7.8 years ago by satsurae • 120 • updated 3 months ago by jma.bullock • 0
0
votes
0
answers
285
views
0
answers
Pathview parsing error
R pathview parsing written 5 months ago by ladypurrsia • 20
3
votes
2
answers
371
views
6 follow
2
answers
Parsing fasta file using seqIO
fasta sequence biopython parsing written 5 months ago by jayasrivatsava • 0 • updated 5 months ago by jrj.healey • 3.9k
3
votes
2
answers
413
views
2
answers
parse nxml file from pubmed
parsing nxml pubmed written 6 months ago by Quak • 270 • updated 6 months ago by Pierre Lindenbaum ♦ 106k
0
votes
1
answer
264
views
1
answer
How I get mRNA accession no if I have gene name and location with the help of perl
mrna perl mirna parsing written 7 months ago by anshulmbi • 0 • updated 7 months ago by Russ • 220
2
votes
1
answer
334
views
1
answer
Trimming local GB file with Biopython
python biopython genbank parsing written 7 months ago by 13dsc • 0 • updated 7 months ago by jrj.healey • 3.9k
4
votes
2
answers
4.4k
views
2
answers
Efficient Fastq Parsing And Manipulation In Java (With Or Without Biojava)
biojava fastq java parsing written 7.8 years ago by Michael Dondrup ♦ 43k • updated 7 months ago by holger.brandl • 10
1
vote
0
answers
336
views
0
answers
From sam data, how do I tell from which fastq file each read came from?
bowtie2 sam read file origin parsing written 9 months ago by bitjunkie • 40
21
votes
5
answers
10k
views
9 follow
5
answers
How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb perl coordinates protein parsing written 7.1 years ago by Sakshi • 20 • updated 11 months ago by Biostar ♦♦ 20
2
votes
1
answer
312
views
1
answer
genome features and sequence parsing
genome cds sequence parsing written 12 months ago by lessismore • 470 • updated 12 months ago by Macspider • 2.4k
5
votes
2
answers
1.3k
views
2
answers
Help extracting the taxonomy for a file containing a list of accession numbers from Genbank
gene sequence taxonomy parsing written 2.1 years ago by infenit101 • 10 • updated 13 months ago by mavino • 10
8
votes
3
answers
676
views
7 follow
3
answers
Parsing FASTA file using class in Python
fasta python class biopython parsing written 13 months ago by mrth • 30 • updated 13 months ago by Matt Shirley ♦ 8.3k
19
votes
6
answers
3.1k
views
13 follow
6
answers
Parse Fastq File - Pad Reads With N'S
fastq parsing written 6.2 years ago by Steffi • 540 • updated 14 months ago by infenit101 • 10
2
votes
1
answer
400
views
1
answer
parsing tabular blast output
tabular blast parsing written 14 months ago by nh75 • 0 • updated 14 months ago by Pierre Lindenbaum ♦ 106k
2
votes
0
answers
588
views
0
answers
parsing only 100% identical hits out of BLAST tab
tabular blast parsing written 15 months ago by jrj.healey • 3.9k • updated 14 months ago by Biostar ♦♦ 20
4
votes
2
answers
665
views
2
answers
NCBI: Parsing data nicely?
table data geo ncbi parsing written 15 months ago by Tom • 10 • updated 15 months ago by a.zielezinski ♦ 8.2k
3
votes
2
answers
779
views
2
answers
parsing cd-hit result
cd-hit parsing written 16 months ago by #### • 160 • updated 16 months ago by Joseph Hughes • 2.5k
0
votes
0
answers
461
views
0
answers
chrY.fa parsing problem
fasta snp parsing written 16 months ago by michael • 0
4
votes
2
answers
7.6k
views
2
answers
Illumina'S Genome Studio Final Report: Forward Or Top Allele?
illumina allele snp parsing written 7.3 years ago by Mau • 10 • updated 18 months ago by Xianjun • 200
26
votes
3
answers
11k
views
14 follow
3
answers
BioPython: convert fasta to fastq without quality score input file
fasta fastq parsing biopython phred written 4.0 years ago by Josh Herr ♦ 5.5k • updated 18 months ago by Biostar ♦♦ 20
5
votes
1
answer
646
views
1
answer
Parsing Read ID's out of a SAM file
perl sam parsing written 18 months ago by SaltedPork • 70 • updated 18 months ago by Devon Ryan ♦ 78k
3
votes
2
answers
646
views
2
answers
parsing alignment file
genome python parsing written 19 months ago by a.rex • 100
1
vote
1
answer
831
views
1
answer
Parsing uniprot .dat files
annotation uniprot parsing written 20 months ago by Biogeek • 260 • updated 19 months ago by Elisabeth Gasteiger • 1.4k
3
votes
2
answers
2.9k
views
2
answers
Extracting Target Sequence From Exonerate Output
biopython parsing written 5.0 years ago by Woa • 2.6k • updated 19 months ago by Biostar ♦♦ 20
0
votes
1
answer
682
views
1
answer
Extracting the coding sequences for a set of protein IDs - NCBI.
ncbi coding sequence protein eutils parsing written 21 months ago by Tom • 10 • updated 21 months ago by Sej Modha • 2.8k
<prev • 150 results • page 1 of 5 • next >
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