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<prev • 159 results • page 1 of 6 • next >
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NCBI Taxon ID to IMG Genome IDs
bioinformatics parsing html parsing ids written 7 weeks ago by Mohak • 0
2
votes
1
answer
918
views
1
answer
Pathview parsing error
R pathview parsing written 22 months ago by ladypurrsia • 40 • updated 9 weeks ago by SMK • 1.8k
1
vote
2
answers
144
views
2
answers
Parsing VCF Data
vcf chromosome tag parsing written 11 weeks ago by gcooper1245 • 0 • updated 11 weeks ago by RamRS ♦ 24k
9
votes
2
answers
197
views
6 follow
2
answers
Convert fasta headers to GFF
htseq gff tophat rna-seq parsing written 3 months ago by alexis.groppi • 30
3
votes
1
answer
348
views
1
answer
How can I parse a json file from MobiDB to retrieve proteome data?
annotation database format proteins parsing written 8 months ago by Jason2 • 0 • updated 7 months ago by ieuangw • 0
3
votes
1
answer
402
views
1
answer
UniProtKB - mapping gene name to ID (*_HUMAN ) using python2
python api uniprot databases parsing written 9 months ago by jg • 0 • updated 9 months ago by vkkodali • 1.2k
1
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1
answer
1.1k
views
1
answer
Ensembl VEP cannot parse HGVS notation.
hgvs ensembl vep ref_seq parsing written 3.3 years ago by gmora • 20 • updated 12 months ago by zx8754 ♦ 8.2k
19
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2
answers
6.9k
views
5 follow
2
answers
Going From Cigar String In Sam To Genomic Coordinates?
cigar alignment sam parsing written 9.2 years ago by User 9996 • 800 • updated 12 months ago by RamRS ♦ 24k
19
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6
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7.0k
views
10 follow
6
answers
How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
pdb java coordinates structure parsing written 9.2 years ago by Jeremiahloh • 30 • updated 12 months ago by RamRS ♦ 24k
4
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2
answers
5.1k
views
2
answers
Efficient Fastq Parsing And Manipulation In Java (With Or Without Biojava)
biojava fastq java parsing written 9.2 years ago by Michael Dondrup ♦ 46k • updated 12 months ago by RamRS ♦ 24k
14
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3
answers
3.0k
views
3
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Parsing Custom Snp Info File In Python
python file parsing written 9.3 years ago by Eric Normandeau ♦ 10k • updated 12 months ago by RamRS ♦ 24k
2
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1
answer
3.2k
views
1
answer
Clustalw Multiple Sequence Alignment Parsing
parsing written 9.3 years ago by Thaman • 3.2k • updated 12 months ago by RamRS ♦ 24k
107
votes
7
answers
87k
views
28 follow
7
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Correct Way To Parse A Fasta File In Python
fasta python parsing written 9.4 years ago by Eric Normandeau ♦ 10k • updated 12 months ago by RamRS ♦ 24k
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273
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Parsing online blast results using NCBIXML returns 50 alignments per Blast.Record object
python parsing ncbixml biopython written 13 months ago by aleksanderczeszyk • 0
0
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0
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452
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0
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Masking and Parsing problem in Standalone BLAST 2.7.1?
makeblastdb masking blastdbcmd ncbi blast parsing written 14 months ago by kabir.deb0353 • 0
7
votes
2
answers
8.5k
views
10 follow
2
answers
Downloading Data From Mg-Rast
parsing written 5.5 years ago by bioinfo • 740 • updated 14 months ago by Dattatray Mongad • 320
5
votes
2
answers
735
views
2
answers
Extracting Sub-cellular location from Uniprot into tabular format
swissprot uniprot parsing written 14 months ago by Michael Dondrup ♦ 46k • updated 14 months ago by Elisabeth Gasteiger • 1.6k
3
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0
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619
views
0
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SAM CIGAR parsing and position counter in R
cigar parsing sam R written 16 months ago by niu.shengyong • 40
3
votes
0
answers
640
views
0
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using awk to extract a specific pattern
gff awk extract parsing written 17 months ago by Darill • 30
3
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2
answers
2.7k
views
2
answers
Problem parsing interval list file to GenomicsDBImport in GATK4
gatk parsing interval gvcf written 21 months ago by Yatros • 10 • updated 17 months ago by prnsml • 0
1
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2
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908
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2
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How to parse a pubmed abstract that contains html tags or Unicode in python?
html python pubmed xml parsing written 17 months ago by aqsaawan.459 • 0 • updated 17 months ago by Pierre Lindenbaum ♦ 122k
0
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0
answers
488
views
0
answers
RNA Structure prediction using context free grammar
structure prediction rna grammar parsing written 17 months ago by maria.sedsvit • 0
3
votes
1
answer
1.2k
views
1
answer
convert CSQ and ANN fields to a tab delimitet document with its headers
vcf perl ann csq parsing written 20 months ago by paumarc • 10 • updated 20 months ago by Pierre Lindenbaum ♦ 122k
8
votes
2
answers
4.9k
views
2
answers
Syntax For Neighborsearch Module In Biopython
pdb biopython parsing written 9.2 years ago by satsurae • 120 • updated 20 months ago by jma.bullock • 0
3
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2
answers
857
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6 follow
2
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Parsing fasta file using seqIO
fasta sequence biopython parsing written 22 months ago by jayasrivatsava • 0 • updated 22 months ago by Joe ♦ 14k
3
votes
2
answers
1.3k
views
2
answers
parse nxml file from pubmed
parsing nxml pubmed written 23 months ago by Quak • 300 • updated 23 months ago by Pierre Lindenbaum ♦ 122k
0
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1
answer
591
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1
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How I get mRNA accession no if I have gene name and location with the help of perl
mrna perl mirna parsing written 24 months ago by anshulmbi • 0 • updated 24 months ago by Russ • 460
3
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1
answer
726
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1
answer
Trimming local GB file with Biopython
python biopython genbank parsing written 24 months ago by 13dsc • 0 • updated 24 months ago by Joe ♦ 14k
1
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0
answers
663
views
0
answers
From sam data, how do I tell from which fastq file each read came from?
bowtie2 sam read file origin parsing written 2.2 years ago by bitjunkie • 40
21
votes
5
answers
12k
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9 follow
5
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How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb perl coordinates protein parsing written 8.5 years ago by Sakshi • 20 • updated 2.3 years ago by Biostar ♦♦ 20
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