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Recent Votes
- C: Count how many gaps and mismatches using pairwise2 alignment
- C: Weighted sequence logos and motifs
- Extract allele count from gnomAD using R
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- A: Bedtools Genomecoveragebed Usage : How To Create A Genome File?
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Recent Replies
-
A: Extract allele count from gnomAD using R by
zx8754 ♦ 6.8k
Not API, but maybe this bioconductor package - [MafDb.gnomAD.r2.0.1.GRCh38](http://bioconductor.o...
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C: How to cluster drugs by up/down gene lists? by
Antony • 0
I now have the complete gene list and I am taking the approach of +1 (up), 0 (missing), -1 (down)...
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C: About the ERCC spike-in sequence reads quantification by
michael.ante • 3.2k
But the fasta-header names are the same as you used in the gtf? The output of `samtools view -c...
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C: Two genes in one SNP by
cpad0112 ♦ 11k
Check dbSNP (rs) versions. There seems to be some change between the versions. https://www.biosta...
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C: Tools To Do the Alternative Splicing Analysis by
chris86 • 240
Kristoffer, can I ask why you don't mention Sleuth and Ballgown which, as far as I understand, we...
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C: About the ERCC spike-in sequence reads quantification by
younglin113 • 10
Because the spike-in sequences I used is not exactly the Thermofisher version. And the gtf file I...
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C: Weighted sequence logos and motifs by
ATpoint ♦ 14k
tools that would take into account the sequence scores Neither of the linked tools does. The...
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C: Question in RNA-Seq gene expression profiling by
ATpoint ♦ 14k
This workflow is quiet old. FPKM normalization has repetitively been shown to be non-reliable for...
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C: Bedtools Genomecoveragebed Usage : How To Create A Genome File? by
Carambakaracho • 930
Thanks, though newer versions of many bedtools seem generally more forgiving with regard to the `...
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C: Orthomcl install schema error by
ATpoint ♦ 14k
conda install -c bioconda orthomcl
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C: Research design on "Animal Genetics and Breeding", using online bioinformatics t by
ATpoint ♦ 14k
I think this is exactly how one should **not** plan a study. One should instead first raise a sci...
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C: Addition of Y chromosome to the ref sequence by
micro32uvas • 10
What I dont get, is that the providers of the ref seq, (NCBI and Bovine database) have not given ...
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