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written 6 days ago by
thejustpark • 60
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5 days ago by
ATpoint ♦ 12k
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Recent Replies
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manuel.belmadani • 90
I don't think you can rely on the order of the genotype calls to identify which one is the father...
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https://www.biostars.org/u/51614/ : Don't forget to follow up on your threads. If an answer was...
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java -jar GenomeAnalysisTK.jar \ -T CombineVariants \ -R reference.fasta \ ...
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> other tools do not work properly, only trim galore works well I find that hard to believe. ...
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Depending on your machine's memory and number of CPUs available, you could try to parallelize it....
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Hey, thanks for the comments. There is a somewhat indirect way of doing this by modifying the t...
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Each row shous the number of locations with a given average edit distance between UMIs. For examp...
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C: Downloading BAM files and converting to fastq by
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Thank you! This seems to work.
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Bowtie2 has an `--end-to-end` mode, read its [manual][1]. BBMap also is a global aligner. But I...
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For sure, see the bamtofastq tool from bedtools: https://bedtools.readthedocs.io/en/latest/conte...
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Welcome to Biostars and thank you for the contribution! Please use the formatting bar (especially...
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Your input files are coming from the `./mapping/` directory. Your output path is specified as `....
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