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Extracting reads from Pacbio Sequel BAM by read name

sequel arrow pbalign pacbio bam written 3 months ago by roryC • 0

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4.9k

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24 follow

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Tutorial: Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone

pbalign tutorial polishing pacbio arrow smrt limk written 14 months ago by Roxane Boyer • 740 • updated 4 months ago by Vijay Lakhujani ♦ 3.2k

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265

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Subset BAM file based on selected coverage, PacBio reads

arrow pbalign coverage bam pacbio written 5 months ago by MyrNat • 0

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664

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Help Needed with Pbalign SamFIlter

quiver pbalign pacbio samfilter written 23 months ago by anniiee9 • 0 • updated 23 months ago by Biostar ♦♦ 20

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487

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samFilter Shows CoreDump

quiver pbalign samfilter written 23 months ago by anniiee9 • 0

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635

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pbalign - SortService returned a non-zero exit status

assembly pbalign pacbio written 2.1 years ago by mjp • 10 • updated 2.0 years ago by Biostar ♦♦ 20

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908

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pbalign issue: blasr v5.1 seems to be not integrated with pbalign

alignment pbalign blasr pacbio written 2.2 years ago by Pawel Osipowski • 20

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1.3k

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reference sequence for blasr and pbalign

de novo assembly pbalign blasr pacbio written 2.8 years ago by komwit.s • 0

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Scholar to h.mon ♦ 21k
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Recent Replies

C: Explanation of ENSEMBL GTF features by b.nota ♦ 5.3k
Nothing more than the answers herein, I'm afraid.
C: Too few differentially expressed genes identified by edgeR by afli • 140
Thank you for your contribution. r1 and r2 mean two biological replicates.
A: How long is the waiting time for a job to run? by ahmad mousavi • 250
Hi Just drag and drop it in a excel window, If you see all data were in one column, then go to D...
C: Too few differentially expressed genes identified by edgeR by afli • 140
Thank you for your suggestion, samples _r1 _r2 are two biological replicates. I changed the desi...
C: Showing up and down regulated GO and pathway using enrichR and ggplot2 by ahmad mousavi • 250
sorry for mistakes, I fixed them.
C: looping a list of trimed fasta files to run spades assembler by RamRS ♦ 19k
Two things: 1. Use the code formatting to present your posts better 2. The hyphen you're using...
C: Error in get(cdfname, object 'mm430mmentrezgcdf' not found by RamRS ♦ 19k
This is a pure R question. Have you tried specifying `lib.loc=` the dir path where you installed ...
C: Sorting by Prefix Reversal (or Flipping Pancakes) approximation by RamRS ♦ 19k
A longer excerpt would give us better context.
C: How to convert NGS .tabular file to excel file? by RamRS ♦ 19k
What have you tried? Did you check with a simple `read.table`?
C: EnhancedVolcano questions on parameters, arguments can set by cpad0112 • 10.0k
Could you provide example data for your query?
C: How long is the waiting time for a job to run? by cpad0112 • 10.0k
.tabular file is a tab separated values (.txt). Take a back up of .tabular file, change the exten...
C: Heritability Atlas Based on Twins Study by Shicheng Guo • 7.0k
Great. Thanks again!!

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