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Help Needed with Pbalign SamFIlter

quiver pbalign pacbio samfilter written 6 months ago by anniiee9 • 0 • updated 6 months ago by Biostar ♦♦ 20

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241

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samFilter Shows CoreDump

quiver pbalign samfilter written 6 months ago by anniiee9 • 0

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280

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pbalign - SortService returned a non-zero exit status

assembly pbalign pacbio written 8 months ago by mjp • 10 • updated 7 months ago by Biostar ♦♦ 20

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398

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pbalign issue: blasr v5.1 seems to be not integrated with pbalign

alignment pbalign blasr pacbio written 9 months ago by Pawel Osipowski • 20

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607

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reference sequence for blasr and pbalign

de novo assembly pbalign blasr pacbio written 16 months ago by komwit.s • 0

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Recent Replies

A: Plink: Quick Way To Combine Two Datasets Using Only Common Markers by ShirleyDai • 20
why not use plink --merge-mode 1, which would output Consensus calls.
A: Scatter plot by cummeRbund by theobroma22 • 700
From the manual, the scatter plot is not used to show groups of genes, so this functionality may ...
A: How can extract nucleotide frequency for position on aligned sequences in clusta by jrj.healey • 1.6k
Another similar option would be with BioPython, to extract a PSSM (Position Specific Score Matrix...
C: how investigate genes after meta-analysis in each experiment by Edalat • 10
I want to Check out effect of a drug on a cancer of several RNA-seq data.is it enough?
A: EvidentialGene reduces redundancy of de novo transcriptome assembly? by gilbert.bionet • 40
This "..increased number of missing and fragmented contigs.." could be due to various things, b...
C: FPKM values from SE vs. PE RNA-Seq libraries by s.herrera706 • 0
Thanks @genomax, however I'm using fpkm values for both single-end and paired-end libraries, and ...
A: Amd Or Intel Based Workstation For Bioinformatics? by int11ap1 • 300
I've just found this workstation: [http://www.ebay.es/itm/-/322567393191?][1] What's your opini...
C: two transcriptomes, same RNAseq, different results. why? by h.mon ♦ 6.6k
And how many biological replicates per sample per experiment? With few replicates, you will have ...
C: SMRT Analysis installation problem - no smrtpipe.py by h.mon ♦ 6.6k
What is the output of: find /opt/smrtanalysis -name "smrtpipe.py"
A: How to get reads/k-mers that are shared in all samples from a sequenced pool of by Brian Bushnell ♦ 12k
You can capture the kmers shared in all samples like this, using the BBMap package: kcompres...
C: STAR mapped more reads to transcriptome by h.mon ♦ 6.6k
It is still hard to say, because we don't know what are the numbers you are talking about. Is it ...
C: FPKM values from SE vs. PE RNA-Seq libraries by genomax ♦ 29k
https://www.biostars.org/p/86346/#86349

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