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<prev • 163 results • page 1 of 6 • next >
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How to do feature selection using PCA?
R pca rna-seq written 9 days ago by ahmad.moousavi • 150
6
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2
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127
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2
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How to perform PCA on gene expression?
marker gene gene expression pca qpcr clustering written 10 days ago by Thomas B. • 10 • updated 10 days ago by ahmad.moousavi • 150
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3
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1.6k
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15 follow
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Tool: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
gene venn diagram pca tool rna-seq written 5 months ago by Jennifer Pham • 250
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766
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25 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes tutorial pca plink ethnicity written 10 weeks ago by Kevin Blighe ♦ 31k
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1
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68
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Getting loadings of components from pcaMethods
pcamethods pca written 14 days ago by johnnytam100 • 80 • updated 14 days ago by Philipp Bayer ♦ 5.7k
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1
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105
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Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 28 days ago by hxlei613 • 80 • updated 28 days ago by Kevin Blighe ♦ 31k
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65
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Mitochondrial genomic analysis by PCoA, PCA and Arlequin
organelle genome pca pcoa arlequin written 28 days ago by micro32uvas • 0
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216
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adding PCA ellipses on ggplot2
gene ggplot2 pca rna-seq written 6 weeks ago by demoraesdiogo2017 • 0
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375
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5 follow
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How to create PCA plot and heatmaps using only significant genes in edgeR ?
R pca edger heatmaps written 4 months ago by Björn • 30 • updated 8 weeks ago by zx8754 ♦ 5.5k
10
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1
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211
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7 follow
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Is it possible to make a PCA plot for samples using TPM exprssion values in R?
pca tpm rna-seq written 8 weeks ago by rimgubaev • 70 • updated 8 weeks ago by andrew.j.skelton73 ♦ 5.4k
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45 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
vcf 1000 genomes tutorial pca plink written 14 months ago by Kevin Blighe ♦ 31k • updated 10 weeks ago by genomax ♦ 58k
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162
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Few SNPs after merging my samples with 1000G phase 3
1000g pca snp written 10 weeks ago by Phoenix Mu • 0
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5
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15 follow
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why PCA for RNA-Seq but tSNE for scRNA-seq?
scrna-seq pca tsne rna-seq written 5 months ago by CY • 210 • updated 10 weeks ago by Charles Warden ♦ 5.6k
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217
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How to reproduce MATLAB tsne('algorithm', 'exact') result in R?
tsne pca matlab R rtsne written 11 weeks ago by mk • 20
3
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1
answer
207
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1
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Confusion About Observations vs. Variables in my Data
R beginner k-means rna-seq pca written 11 weeks ago by Ark • 60 • updated 11 weeks ago by RamRS ♦ 19k
1
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0
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197
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Probabilistic PCA on very sparse SNP matrix
probabilistic pca pca snpstats snpmatrix written 5 months ago by dominicdhall • 40 • updated 12 weeks ago by Biostar ♦♦ 20
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1
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5.2k
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1
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Scale and Center [normalized] RNA-seq expression counts for PCA ?
genome R pca rna-seq sequencing written 3.7 years ago by gaelgarcia • 100 • updated 12 weeks ago by Kevin Blighe ♦ 31k
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3
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1.2k
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3
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PCA Analysis Direction
gene R pca microarray python written 2.3 years ago by Steve • 10 • updated 3 months ago by Biostar ♦♦ 20
2
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1
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238
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1
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PCA implementation in plink
population pca plink written 3 months ago by prasundutta87 • 260 • updated 3 months ago by chrchang523 ♦ 4.2k
4
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371
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PCA analysis for beginners
vcf R ngs pca sequencing written 3 months ago by Bella_p • 50 • updated 3 months ago by zx8754 ♦ 5.5k
2
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1
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178
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1
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What values should I use for principle component analysis of microarray data?
R pca microarray written 3 months ago by reubenmcgregor88 • 40 • updated 3 months ago by Kevin Blighe ♦ 31k
10
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0
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546
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6 follow
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The interpretation of PCA
R deseq2 pca written 4 months ago by Za • 120 • updated 3 months ago by Biostar ♦♦ 20
5
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1
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334
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1
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PCA: summarize results from principal components analysis and look for population heterogeneity
principal components analysis pca plink written 4 months ago by filippo.corponi • 10 • updated 4 months ago by Kevin Blighe ♦ 31k
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183
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1
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choice of snps for pca analysis
indep-pairwise pca plink population genetics written 4 months ago by wrab425 • 10 • updated 4 months ago by Kevin Blighe ♦ 31k
0
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1
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713
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1
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Sleuth PCA plots - how to change axis to percentage?
R sleuth pca kallisto rna-seq written 15 months ago by BioBing • 90 • updated 4 months ago by bruce.moran • 420
4
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1
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240
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1
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PCA and statistics on SNPmatrix
pca snp written 5 months ago by dominicdhall • 40 • updated 5 months ago by leeandroid • 80
1
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1
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393
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1
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How to make a PCA plot to check similar samples between two cohorts?
z-score pca microarray rna-seq written 5 months ago by Bioinfo • 270 • updated 5 months ago by Kevin Blighe ♦ 31k
3
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2
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5.8k
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6 follow
2
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How To Adjust Data For Confounding Covariates Before Pca?
pca written 5.5 years ago by scottwilliamrobinson • 110 • updated 5 months ago by fansili2013 • 20
1
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1
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856
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1
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Looking for software to run a multivariate linear mixed model GWAS on a Principal Component Analysis with a bimodal distribution
gwas pca snp written 17 months ago by r.harrington • 30 • updated 5 months ago by sa.kornilov • 0
6
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1
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413
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7 follow
1
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rna seq replicates not clustering
pca rna-seq differential expression written 6 months ago by guillaume.rbt • 460
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