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<prev • 172 results • page 1 of 6 • next >
5
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1
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85
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1
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A weird PCA result using a local Galaxy
galaxy pca rna-seq principal component analysis written 4 days ago by Gary • 450 • updated 4 days ago by Devon Ryan ♦ 88k
3
votes
1
answer
117
views
1
answer
Principal component analysis: PC2 contribute more to variance than PC1?
pca principal component analysis seurat written 5 days ago by chilifan • 60 • updated 5 days ago by manuel.belmadani • 460
10
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0
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210
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7 follow
0
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Tool: PCAtools: everything Principal Components Analysis
R bioconductor pca eigenvector tool written 13 days ago by Kevin Blighe ♦ 37k • updated 13 days ago by prasundutta87 • 310
7
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2
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2.5k
views
7 follow
2
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How to plot RNASeq data in PCA
R ggplot2 pca rna-seq written 17 months ago by elizabethR • 60 • updated 19 days ago by zx8754 ♦ 6.5k
3
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0
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102
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0
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sva combat removes wanted biological variation
R sva combat rna-seq pca written 20 days ago by exin • 50 • updated 20 days ago by zx8754 ♦ 6.5k
21
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0
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1.9k
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31 follow
0
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes tutorial pca plink ethnicity written 5 months ago by Kevin Blighe ♦ 37k
6
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1
answer
4.1k
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1
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Question About Hellinger Distances And Principle Coordinates Analysis
pca written 5.2 years ago by bioinformaticshelp • 10 • updated 4 weeks ago by Biostar ♦♦ 20
2
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1
answer
156
views
1
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R RGL plot3d different symbols
rgl R pca written 11 weeks ago by dp0b • 30 • updated 5 weeks ago by Alex Reynolds ♦ 27k
2
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0
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198
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5 follow
0
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to get each covariate with PC loading in PCA
pca rna-seq written 5 weeks ago by Grace_G • 0
53
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0
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6.3k
views
48 follow
0
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
vcf 1000 genomes tutorial pca plink written 17 months ago by Kevin Blighe ♦ 37k • updated 5 weeks ago by alicodendrochit • 0
0
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1
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132
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1
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How to choose best PCA for reducing genomic inflation
gwas associtaion study genomic inflation plink pca written 8 weeks ago by BioRyder • 160 • updated 8 weeks ago by Kevin Blighe ♦ 37k
29
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2
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2.4k
views
16 follow
2
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Tool: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
gene venn diagram pca tool rna-seq written 9 months ago by Jennifer Pham • 260
1
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1
answer
170
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1
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how to plot PCA for microarray normalized data
pca written 10 weeks ago by raya.girish • 20 • updated 10 weeks ago by b.nota ♦ 6.1k
1
vote
1
answer
132
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1
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Whether to include reference genome in PCA for association analysis?
gwas pca written 11 weeks ago by Phoenix Mu • 0 • updated 11 weeks ago by zx8754 ♦ 6.5k
35
votes
6
answers
3.3k
views
20 follow
6
answers
why PCA for RNA-Seq but tSNE for scRNA-seq?
scrna-seq pca tsne rna-seq written 9 months ago by CY • 270 • updated 12 weeks ago by Minstein • 60
71
votes
2
answers
6.7k
views
30 follow
2
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PCA in a RNA seq analysis
pca rna-seq written 15 months ago by Mozart • 80 • updated 12 weeks ago by Giovanni M Dall'Olio ♦ 26k
1
vote
1
answer
429
views
1
answer
How to do feature selection using PCA?
R pca rna-seq written 3 months ago by ahmad mousavi • 380
6
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2
answers
240
views
2
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How to perform PCA on gene expression?
marker gene gene expression pca qpcr clustering written 3 months ago by Thomas B. • 10 • updated 3 months ago by ahmad mousavi • 380
0
votes
1
answer
157
views
1
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Getting loadings of components from pcaMethods
pcamethods pca written 3 months ago by johnnytam100 • 100 • updated 3 months ago by Philipp Bayer ♦ 5.9k
0
votes
1
answer
251
views
1
answer
Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 4 months ago by hxlei613 • 80 • updated 4 months ago by Kevin Blighe ♦ 37k
0
votes
0
answers
143
views
0
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Mitochondrial genomic analysis by PCoA, PCA and Arlequin
organelle genome pca pcoa arlequin written 4 months ago by micro32uvas • 10
0
votes
0
answers
684
views
0
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adding PCA ellipses on ggplot2
gene ggplot2 pca rna-seq written 4 months ago by demoraesdiogo2017 • 10
3
votes
0
answers
558
views
5 follow
0
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How to create PCA plot and heatmaps using only significant genes in edgeR ?
R pca edger heatmaps written 7 months ago by Björn • 40 • updated 5 months ago by zx8754 ♦ 6.5k
9
votes
1
answer
362
views
6 follow
1
answer
Is it possible to make a PCA plot for samples using TPM exprssion values in R?
pca tpm rna-seq written 5 months ago by rimgubaev • 70 • updated 5 months ago by andrew.j.skelton73 ♦ 5.5k
0
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0
answers
257
views
0
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Few SNPs after merging my samples with 1000G phase 3
1000g pca snp written 5 months ago by Phoenix Mu • 0
1
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0
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343
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0
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How to reproduce MATLAB tsne('algorithm', 'exact') result in R?
tsne pca matlab R rtsne written 5 months ago by mk • 80
3
votes
1
answer
269
views
1
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Confusion About Observations vs. Variables in my Data
R beginner k-means rna-seq pca written 5 months ago by Ark • 70 • updated 5 months ago by RamRS ♦ 20k
1
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0
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255
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0
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Probabilistic PCA on very sparse SNP matrix
probabilistic pca pca snpstats snpmatrix written 8 months ago by dominicdhall • 40 • updated 6 months ago by Biostar ♦♦ 20
2
votes
1
answer
5.8k
views
1
answer
Scale and Center [normalized] RNA-seq expression counts for PCA ?
genome R pca rna-seq sequencing written 4.0 years ago by gaelgarcia • 120 • updated 6 months ago by Kevin Blighe ♦ 37k
4
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3
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1.4k
views
3
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PCA Analysis Direction
gene R pca microarray python written 2.5 years ago by Steve • 10 • updated 6 months ago by Biostar ♦♦ 20
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