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<prev • 205 results • page 1 of 7 • next >
4
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411
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sva combat removes wanted biological variation
R sva combat rna-seq pca written 9 months ago by exin • 50 • updated 20 hours ago by Biostar ♦♦ 20
2
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1
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106
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1
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DEseq2 Shade PCA plot by gene counts
ggplot2 pca deseq2 heatmap written 8 days ago by paulranum11 • 40 • updated 7 days ago by Kevin Blighe ♦ 51k
5
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1
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83
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1
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PCA scatterplot with different shapes for different clusters
R pca rna-seq clustering written 11 days ago by myyid68 • 20
5
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1
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139
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1
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Require comprehensive tutorials for PCA analysis of microarray
R pca microarray written 13 days ago by n.anuragsharma • 10 • updated 13 days ago by Kevin Blighe ♦ 51k
1
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1
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138
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1
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What causes some individuals to be separated clusters from the population the in PCA
pca snp population genetics written 19 days ago by haneenih7 • 40
1
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1
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109
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1
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PCA with Plink1.9 - eigenval and eigenvec files are all 0
pca plink written 20 days ago by GiantSilverSoy • 0 • updated 20 days ago by chrchang523 ♦ 5.8k
4
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1
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168
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1
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plot principal component analysis: how to improve the graphics
R pca written 27 days ago by SeaStar • 20 • updated 27 days ago by igor ♦ 8.8k
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0
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136
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5 follow
0
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PCA plot interpretation from scRNA data set
pca scrna seq seurat written 29 days ago by cook.675 • 10
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0
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128
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0
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Does having sample identifiers in a Seurat object semi-supervise PCA results?
single-cell seurat3 pca analysis unsupervised written 5 weeks ago by Arko • 20
29
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5.5k
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41 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes tutorial pca plink ethnicity written 14 months ago by Kevin Blighe ♦ 51k
4
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1
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214
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1
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Detecting outlier DESeq2
deseq2 pca deg bulk rna-seq written 7 weeks ago by maria2019 • 50 • updated 7 weeks ago by Kevin Blighe ♦ 51k
17
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1
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5.4k
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11 follow
1
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Plotting file eigenvec
gwas pca plink written 5.5 years ago by danielestrife • 70 • updated 7 weeks ago by zx8754 ♦ 8.4k
0
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1
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476
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1
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Genetic PCA from poolseq genotype file
pca poolseq genotype popoolation written 19 months ago by AP • 90 • updated 8 weeks ago by ndiaz • 0
0
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0
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115
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0
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What is meant exactly by linear separation in principle component analysis in the context of gene expression?
linearity pca rna-seq written 11 weeks ago by amjass • 0
0
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1
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158
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1
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Which axis to look for in PCA plot to understand the sample clustering
pca qc rna-seq clustering written 12 weeks ago by kousi31 • 0 • updated 12 weeks ago by swbarnes2 ♦ 7.0k
0
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0
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152
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0
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Controlling for batch effect in SNP-based PCA
batch effect pca snp whole-genome written 3 months ago by Ace • 70
0
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1
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722
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1
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Question about PCA plot using RPKM/FPKM.
fpkm pca rna-seq written 13 months ago by hxlei613 • 90 • updated 3 months ago by Biostar ♦♦ 20
6
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0
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372
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0
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Should the expression data be centered before PCA?
pca expression data centering written 3 months ago by Raheleh • 90
8
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1
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491
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1
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PCA vs ICA prior to t-SNE or UMAP
pca ica rna-seq umap t-sne written 3 months ago by rtrende • 10
0
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3
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239
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5 follow
3
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PCA on RNAseq time series data
gene pca rna-seq written 3 months ago by jennifer.m.conrad.gr • 0 • updated 3 months ago by swbarnes2 ♦ 7.0k
1
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504
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0
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How to remove outliers using PCA in R?
R pca written 3 months ago by zhaoliang0302 • 0
6
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250
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5 follow
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PCA cannot separate different breeds
wgs pca admix snp tree written 3 months ago by micro32uvas • 10 • updated 3 months ago by RamRS ♦ 24k
4
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1
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194
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1
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How to interpret a PCA
pca plink written 4 months ago by frd.graeme • 10
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2
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1.9k
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2
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Zero Trace error running Eigenstrat 5
genetics pca written 6.2 years ago by alberto.montesanto • 0 • updated 4 months ago by Baoxu • 0
1
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0
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154
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0
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PCA on pairwise allele sharing counts
pca snp written 5 months ago by devenvyas • 600
62
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1
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16k
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42 follow
1
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PCA plot from read count matrix from RNA-Seq
pca rna-seq written 2.0 years ago by rachel.kubik12 • 100 • updated 5 months ago by mayankkaashyap • 20
10
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1
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3.0k
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1
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PCA using HapMap population data
hapmap vcf pca genotype written 3.7 years ago by eze.anokian • 10 • updated 5 months ago by zx8754 ♦ 8.4k
22
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2
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973
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5 follow
2
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Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?
tsne dimension reduction pca visne umap written 5 months ago by Kevin Blighe ♦ 51k • updated 5 months ago by chris86 • 300
1
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260
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How to in R: Include principal components as covariates in analysis
pca covariates principal components written 6 months ago by RNAseqer • 110 • updated 6 months ago by Kevin Blighe ♦ 51k
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0
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423
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0
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How to create a PCA Plot of Proteomics Data in R?
proteomics R pca written 6 months ago by ishackm • 80
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