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<prev • 186 results • page 1 of 7 • next >
51
votes
1
answer
12k
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37 follow
1
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PCA plot from read count matrix from RNA-Seq
pca rna-seq written 19 months ago by rachel.kubik12 • 80 • updated 4 days ago by mayankkaashyap • 0
10
votes
1
answer
2.1k
views
1
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PCA using HapMap population data
hapmap vcf pca genotype written 3.2 years ago by eze.anokian • 10 • updated 19 days ago by zx8754 ♦ 7.5k
20
votes
2
answers
234
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5 follow
2
answers
Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?
tsne dimension reduction pca visne umap written 19 days ago by Kevin Blighe ♦ 43k • updated 19 days ago by chris86 • 290
1
vote
1
answer
107
views
1
answer
How to in R: Include principal components as covariates in analysis
pca covariates principal components written 4 weeks ago by RNAseqer • 110 • updated 4 weeks ago by Kevin Blighe ♦ 43k
1
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0
answers
149
views
0
answers
How to create a PCA Plot of Proteomics Data in R?
proteomics R pca written 5 weeks ago by ishackm • 60
2
votes
1
answer
127
views
1
answer
Principal components analysis of SNP data
principal components pca snp written 6 weeks ago by Abdul Rafay Khan • 1.0k
7
votes
2
answers
237
views
2
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PCA analysis with R
ggfortify R pca autoplot written 7 weeks ago by manjumoorthy95 • 10 • updated 7 weeks ago by Kevin Blighe ♦ 43k
11
votes
1
answer
1.8k
views
1
answer
How Pca Was Done To Relate Health Status And Abundance Of Bacteria?
metagenomics bacteria pca written 7.8 years ago by Tianyang Li • 490 • updated 8 weeks ago by Biostar ♦♦ 20
2
votes
0
answers
199
views
0
answers
Different mappings, different PCAs using TEtranscripts
tetranscripts pca written 9 weeks ago by raquelgarza95 • 40
1
vote
0
answers
967
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0
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What is the use of PCA in ethnicity correction
pca written 3.3 years ago by MAPK • 1.4k • updated 9 weeks ago by Biostar ♦♦ 20
0
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0
answers
115
views
0
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Where to get population diversity information of GTEx database?
pca gtex rna-seq written 9 weeks ago by r.tor • 40
7
votes
1
answer
2.9k
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1
answer
EIGENSOFT : Ploteig, 3D Plots
eigensoft pca snp plot written 4.0 years ago by aritra90 • 40 • updated 10 weeks ago by ravikumardhanapal • 0
2
votes
1
answer
207
views
1
answer
How to check if first two components of PCA are separated without visualisation?
R ngs pca machine learning python written 12 weeks ago by fernardo • 130 • updated 12 weeks ago by raunakms • 1.1k
10
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1
answer
257
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1
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Post PCA analysis
population stratification pca correlation matrix written 3 months ago by charvinangia • 30 • updated 3 months ago by Kevin Blighe ♦ 43k
3
votes
1
answer
244
views
1
answer
Can this PCA be a highly good result?
ngs pca machine learning rna-seq written 3 months ago by fernardo • 130
10
votes
3
answers
3.1k
views
8 follow
3
answers
input counts to PCA in RNAseq
R ggplot2 pca rna-seq written 21 months ago by elizabethR • 70 • updated 3 months ago by Kevin Blighe ♦ 43k
0
votes
0
answers
151
views
0
answers
Reference set of SNPs for SNP-pruning for PCA in GWAS
gwas pca pruning snp linkage disequilibrium written 3 months ago by pcsk9 • 0
1
vote
1
answer
139
views
1
answer
Problems with PCA for genotyped data
genotyped data pca written 3 months ago by charvinangia • 30
0
votes
1
answer
172
views
1
answer
pcaMethods: What is best suited for analysing log2cpm data?
pca rna-seq written 3 months ago by augihol • 20 • updated 3 months ago by Kevin Blighe ♦ 43k
5
votes
1
answer
191
views
1
answer
A weird PCA result using a local Galaxy
galaxy pca rna-seq principal component analysis written 4 months ago by Gary • 450 • updated 4 months ago by Devon Ryan ♦ 90k
3
votes
1
answer
333
views
1
answer
Principal component analysis: PC2 contribute more to variance than PC1?
pca principal component analysis seurat written 4 months ago by chilifan • 70 • updated 4 months ago by manuel.belmadani • 860
17
votes
0
answers
487
views
8 follow
0
answers
Tool: PCAtools: everything Principal Components Analysis
R bioconductor pca eigenvector tool written 4 months ago by Kevin Blighe ♦ 43k • updated 4 months ago by prasundutta87 • 330
3
votes
0
answers
250
views
0
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sva combat removes wanted biological variation
R sva combat rna-seq pca written 4 months ago by exin • 50 • updated 4 months ago by zx8754 ♦ 7.5k
23
votes
0
answers
3.3k
views
34 follow
0
answers
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes tutorial pca plink ethnicity written 9 months ago by Kevin Blighe ♦ 43k
6
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1
answer
4.2k
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1
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Question About Hellinger Distances And Principle Coordinates Analysis
pca written 5.5 years ago by bioinformaticshelp • 10 • updated 5 months ago by Biostar ♦♦ 20
2
votes
1
answer
431
views
1
answer
R RGL plot3d different symbols
rgl R pca written 6 months ago by dp0b • 30 • updated 5 months ago by Alex Reynolds ♦ 28k
2
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0
answers
295
views
5 follow
0
answers
to get each covariate with PC loading in PCA
pca rna-seq written 5 months ago by Grace_G • 20
53
votes
0
answers
7.9k
views
48 follow
0
answers
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
vcf 1000 genomes tutorial pca plink written 21 months ago by Kevin Blighe ♦ 43k • updated 5 months ago by alicodendrochit • 0
0
votes
1
answer
257
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1
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How to choose best PCA for reducing genomic inflation
gwas associtaion study genomic inflation plink pca written 5 months ago by BioRyder • 160 • updated 5 months ago by Kevin Blighe ♦ 43k
29
votes
2
answers
3.2k
views
16 follow
2
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Tool: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
gene venn diagram pca tool rna-seq written 13 months ago by Jennifer Pham • 290
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