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<prev • 220 results • page 1 of 8 • next >
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Merge VCF file
vcf gatk pca gwas written 1 day ago by devarora • 50 • updated 1 day ago by Pierre Lindenbaum ♦ 126k
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Plink Error in PCA plot
vcf gwas pca plink written 13 days ago by devarora • 50
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DESEQ2 : plotPCA
deseq2 pca rna-seq written 13 days ago by ZheFrench • 270
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Why the PCA results of PCASamples() from methylkit is different from prcomp()?
pcasamples multiplepca pca prcomp methylkit written 15 days ago by maria2019 • 90
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How to perform PCA analysis
pca rna-seq written 19 days ago by francesca3 • 0 • updated 19 days ago by Kevin Blighe ♦ 54k
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Question about interpreting PCA values in HiC data
compartments pca hic written 20 days ago by srhic • 0
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Add borders to the shapes in the PCA plot by using autoplot
ggfortify R ggplot2 pca autoplot written 28 days ago by mohammedtoufiq91 • 110 • updated 28 days ago by zx8754 ♦ 9.0k
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In PCA on RNA-Seq data, what does Gaussian distribution refer to?
pca gaussian rna-seq written 29 days ago by CY • 460 • updated 29 days ago by Devon Ryan ♦ 94k
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Why do I get different results for PC1 from plotPCA(DESeq2) and prcomp?
deseq2 pca plotpca prcomp written 5 weeks ago by maria2019 • 90
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Forum: Feature Selection in 10X scRNA-seq data
scrna-seq forum pca software-error written 6 weeks ago by ATpoint ♦ 29k
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53 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
vcf 1000 genomes tutorial pca plink written 2.4 years ago by Kevin Blighe ♦ 54k • updated 6 weeks ago by caspase8mach • 0
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47 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes tutorial pca plink ethnicity written 17 months ago by Kevin Blighe ♦ 54k
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Which counts to use for RNA-seq heatmap and PCA?
pca rna-seq edger heatmap written 10 weeks ago by Lucy • 40
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Interpretation problem at PCA plot for detecting batch effect
pca rna-seq batch effect written 11 weeks ago by modarzi • 110
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6 follow
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How to plot PCA on two or more variables
factominer pca3d pca variables R written 11 weeks ago by mohammedtoufiq91 • 110
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250
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biplot scaling options (ggbiplot)
biplot pca ggbiplot written 12 weeks ago by Lucy • 40
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How to check how much loading each SNP had on the first or second principal component
pca snp written 3 months ago by haneenih7 • 60 • updated 3 months ago by chrchang523 ♦ 6.5k
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11 follow
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Gene Lists Using Principal Component Analysis In Microarray Gene Expression
R pca microarray written 8.4 years ago by Tonig • 440 • updated 3 months ago by Biostar ♦♦ 20
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sva combat removes wanted biological variation
R sva combat rna-seq pca written 12 months ago by exin • 50 • updated 3 months ago by Biostar ♦♦ 20
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DEseq2 Shade PCA plot by gene counts
ggplot2 pca deseq2 heatmap written 3 months ago by paulranum11 • 60 • updated 3 months ago by Kevin Blighe ♦ 54k
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185
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PCA scatterplot with different shapes for different clusters
R pca rna-seq clustering written 3 months ago by myyid68 • 30
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Require comprehensive tutorials for PCA analysis of microarray
R pca microarray written 3 months ago by n.anuragsharma • 20 • updated 3 months ago by Kevin Blighe ♦ 54k
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What causes some individuals to be separated clusters from the population the in PCA
pca snp population genetics written 3 months ago by haneenih7 • 60
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PCA with Plink1.9 - eigenval and eigenvec files are all 0
pca plink written 3 months ago by GiantSilverSoy • 0 • updated 3 months ago by chrchang523 ♦ 6.5k
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plot principal component analysis: how to improve the graphics
R pca written 4 months ago by SeaStar • 20 • updated 4 months ago by igor ♦ 9.5k
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PCA plot interpretation from scRNA data set
pca scrna seq seurat written 4 months ago by cook.675 • 10
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Does having sample identifiers in a Seurat object semi-supervise PCA results?
single-cell seurat3 pca analysis unsupervised written 4 months ago by Arko • 30
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Detecting outlier DESeq2
deseq2 pca deg bulk rna-seq written 4 months ago by maria2019 • 90 • updated 4 months ago by Kevin Blighe ♦ 54k
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Plotting file eigenvec
gwas pca plink written 5.8 years ago by danielestrife • 70 • updated 4 months ago by zx8754 ♦ 9.0k
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Genetic PCA from poolseq genotype file
pca poolseq genotype popoolation written 22 months ago by AP • 90 • updated 5 months ago by ndiaz • 0
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