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<prev • 139 results • page 1 of 5 • next >
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getting unlinked variants and PCA analysis
phylogeny pca plink written 5 days ago by wrab425 • 0 • updated 4 days ago by chrchang523 ♦ 3.1k
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Genetic PCA from poolseq genotype file
pca poolseq genotype popoolation written 5 days ago by AP • 60
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Setting the label and value size for axis in PCA plot with fviz_pca_ind in factoextra
R pca factoextra written 6 days ago by lessismore • 470 • updated 5 days ago by Kevin Blighe ♦ 16k
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Strange Files With EIGENSOFT smartpca
eigensoft gwas pca written 16 days ago by dxm275 • 0 • updated 16 days ago by h.mon ♦ 13k
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Is it OK doing Principal component analysis (PCA) analysis just with high variance genes?
pca written 20 days ago by bioinfo_wen • 0 • updated 20 days ago by Hussain Ather • 820
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Forum: How do I explain to my non-bioinformatician labmates how to interpret principal components?
communication forum analysis pca rna-seq written 2.3 years ago by Kristin Muench • 210 • updated 22 days ago by Kevin Blighe ♦ 16k
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Correcting for population structure in GWAS?
gwas qq plot pca gemma written 4 weeks ago by maya123z • 10 • updated 4 weeks ago by Kevin Blighe ♦ 16k
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How to input covariates in GEMMA?
gwas pca gcta gemma written 4 weeks ago by maya123z • 10
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PCA on sample GO terms
meta analysis go pca microarray clustering written 2.1 years ago by gilagalad • 10 • updated 4 weeks ago by igor • 5.7k
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How to fix (find) number of dimensions while reducing dimensions in tSNE method?
tsne pca rna-seq R written 4 weeks ago by sciencer • 30
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Analyse diversity in nucleotide sequences of one gene
phylogenetic tree pca snp written 4 weeks ago by khhgng • 50
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14 follow
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PCA in a RNA seq analysis
pca rna-seq written 5 months ago by Mozart • 40
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17 follow
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PCA plot from read count matrix from RNA-Seq
pca rna-seq written 5 months ago by rachel.kubik12 • 10 • updated 5 weeks ago by a.archana • 0
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Log transformation of RPKM data for PCA analysis
rpkm log-transformation pca rna-seq written 2.5 years ago by AB • 90 • updated 6 weeks ago by Biostar ♦♦ 20
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PCA plot interpretation
pca rna-seq written 9 weeks ago by phur72 • 0 • updated 9 weeks ago by Jean-Karim Heriche ♦ 15k
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5 follow
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How do you extract data coordinates from PCA in R?
R pca written 10 weeks ago by connor.j.rogerson • 10 • updated 10 weeks ago by Jacob Warner • 590
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RNAseq normalized counts PCA
deseq2 pca rna-seq ercc spike-in written 11 weeks ago by Gabiole7 • 0
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24 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format
vcf 1000 genomes tutorial pca plink written 7 months ago by Kevin Blighe ♦ 16k • updated 3 months ago by DataFanatic • 70
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PCA from genotype data using the --pca option in plink2
plink2 pca ld pruning written 3 months ago by DataFanatic • 70
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363
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GWAS; high genomic inflation factor
gwas pca written 4 months ago by Rich • 30
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ClustVis error: too many open devices
clustvis pca written 4 months ago by The Last Word • 150
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PCA Tools to analyse RNA-seq data
pca rna-seq written 4 months ago by vasanth.m.29 • 0 • updated 4 months ago by TriS • 3.3k
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How can I generate Heat Map with dendograms, and PCA analysis in "R Programming" for this type of data?
R heat map pca written 4 months ago by BIOAWY • 0 • updated 4 months ago by Kevin Blighe ♦ 16k
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5 follow
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How To Adjust Data For Confounding Covariates Before Pca?
pca written 4.9 years ago by scottwilliamrobinson • 100 • updated 5 months ago by Biostar ♦♦ 20
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1
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Gene expression PCA with DESeq2 filtration
filtration pca rna written 5 months ago by Picasa • 340 • updated 5 months ago by Kevin Blighe ♦ 16k
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Reporting p.value for my PCA results
gene expression pca written 5 months ago by Shamim Sarhadi • 200 • updated 5 months ago by Kevin Blighe ♦ 16k
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5 follow
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Different PCA plots using rlog and vsd on the same data set
deseq2 pca rna-seq written 7 months ago by lirongrossmann • 20 • updated 7 months ago by geek_y ♦ 8.3k
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Help! How to plot RNASeq data in PCA
pca rna-seq written 7 months ago by elizabethR • 40
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What is the role of MetaPCA Package
pca meta-analysis written 18 months ago by Agaz Hussain Wani • 40 • updated 7 months ago by Biostar ♦♦ 20
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PCA matching controls with cases using genotypes
pca plink written 8 months ago by Floris Brenk • 800
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