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<prev • 272 results • page 1 of 10 • next >
2
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3
answers
115
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3
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Principle component analysis using VCF file as input.
vcf pca written 6 days ago by sayyarsehrish • 0 • updated 5 days ago by devarora • 300
4
votes
1
answer
98
views
1
answer
Plotting the loading of single PCs (PCAtools)
pcatools pca written 12 days ago by carl-philipp.hackstein • 20
11
votes
2
answers
964
views
15 follow
2
answers
Forum: Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
scrna-seq forum pca software-error written 12 months ago by ATpoint ♦ 44k
0
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0
answers
165
views
0
answers
Draw a pca diagram of plink data in R
R pca plink written 27 days ago by mohsen • 0
5
votes
2
answers
367
views
2
answers
Which of PCA or Heatmap plots are better to exclude outlier replicates from normalised microarray or similar datasets?
outlier pca microarray heatmap written 27 days ago by Microuser • 0 • updated 27 days ago by Mensur Dlakic • 8.4k
2
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1
answer
162
views
1
answer
A question on the interpretation of a PCA plot
pca written 5 weeks ago by Sam • 120 • updated 5 weeks ago by rpolicastro ♦ 3.3k
1
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2
answers
184
views
2
answers
Different results from MDS and PCA plots for DE analysis
deseq2 pca mds edger written 5 weeks ago by benjytan1488 • 0 • updated 5 weeks ago by Mensur Dlakic • 8.4k
0
votes
0
answers
200
views
0
answers
Principle component analysis
cut-off pca written 7 weeks ago by sana777munquad • 0 • updated 7 weeks ago by Kevin Blighe ♦ 69k
0
votes
0
answers
100
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0
answers
Protein-Ligand PCA/covariance analysis
pca gromacs protein-ligand written 7 weeks ago by Bioinformatician_in_trouble • 30
3
votes
1
answer
219
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5 follow
1
answer
What are ntop on plotPCA vsd in DESeq2?
R deseq2 pca plotpca rna-seq written 10 weeks ago by ecg1g15 • 10 • updated 10 weeks ago by ATpoint ♦ 44k
1
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0
answers
157
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0
answers
ggplot2 scater plot with three grouping parameters
pca ggplot2 aes written 10 weeks ago by Assa Yeroslaviz • 1.4k
0
votes
0
answers
193
views
0
answers
Perform PCA for mtDNA MSA Data
mtdna mitochondrial genome plink haploid pca written 10 weeks ago by Tastulek • 0
0
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0
answers
179
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0
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How to make a PCA plot in three dimensional-RNA-Seq analysis
next-gen pca rna-seq written 12 weeks ago by Manoj • 80
0
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0
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214
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0
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Correcting RNA-seq matrix by removing principal components gives negative values in the matrix
principal components tpm rna-seq pca written 12 weeks ago by guillepalou4 • 10
0
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1
answer
212
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1
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Interpretation of two PCA plots
pca rna-seq clustering written 3 months ago by newbie • 90 • updated 3 months ago by swbarnes2 ♦ 9.4k
0
votes
1
answer
348
views
1
answer
Eigenvalues from PLINK1.90 pca don't sum to number of variables?
pca plink written 8 months ago by c.horscroft • 0 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
290
views
5 follow
1
answer
Does PCA results impact on DESeq2 design choices?
deseq2 pca rna-seq written 3 months ago by sc • 20 • updated 3 months ago by caggtaagtat • 1.4k
4
votes
1
answer
241
views
1
answer
PC1 vs PC2 in separating healthy vs disease
pca rna-seq written 3 months ago by asumani • 70
8
votes
1
answer
1.8k
views
6 follow
1
answer
How many PCs should be considered for downstream analyses?
rnaseq scrnaseq pca umap clustering written 11 months ago by bioinforesearchquestions • 280 • updated 3 months ago by Eugene A • 90
1
vote
2
answers
405
views
7 follow
2
answers
Differences between PCA plots in DESeq and FactoMineR
R pca deseq factominer written 4 months ago by caitlin.mcandry • 0
1
vote
2
answers
6.5k
views
2
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Principle Component Analysis (PCA) for GWAS (SNP genotype data)
R pca snp gwas written 6.2 years ago by samorjoy • 10 • updated 4 months ago by ricardoguerreiro2121 • 60
2
votes
1
answer
240
views
1
answer
Principle component analysis PCA
pca principalcomponentanalysis written 4 months ago by phamh • 0 • updated 4 months ago by Biostar ♦♦ 20
10
votes
1
answer
2.6k
views
6 follow
1
answer
PCA: summarize results from principal components analysis and look for population heterogeneity
principal components analysis pca plink written 2.5 years ago by F_cm_C • 20 • updated 4 months ago by karenunr100 • 0
3
votes
1
answer
337
views
1
answer
PCA and loadings: how to discriminate betwen real and background/noise signal?
R pcatools loadings pca rna-seq written 5 months ago by camillab. • 30
1
vote
1
answer
418
views
1
answer
Detecting Outliers by looking at PCA
R outlier pca rna-seq written 4 months ago by leekun4 • 10 • updated 4 months ago by swbarnes2 ♦ 9.4k
2
votes
0
answers
382
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0
answers
PCA and loadings question
scale bulkrna loadings pca written 6 months ago by camillab. • 30 • updated 4 months ago by Biostar ♦♦ 20
25
votes
0
answers
1.8k
views
16 follow
0
answers
Tool: PCAtools: everything Principal Components Analysis
R bioconductor pca eigenvector tool written 24 months ago by Kevin Blighe ♦ 69k
0
votes
0
answers
171
views
0
answers
pcaExplorer greyed out should I wait or Is there a problem I have to fix
pcaexplorer pca rna-seq written 5 months ago by roysense • 0 • updated 5 months ago by Kevin Blighe ♦ 69k
4
votes
1
answer
272
views
1
answer
Genotype PCA from genotype matrix
pca genotype snp written 5 months ago by i.sudbery ♦ 10k
1
vote
1
answer
228
views
1
answer
Finding outlier replicates of PCA plot
pca microarray written 5 months ago by Microuser • 0 • updated 5 months ago by JC ♦ 12k
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