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<prev • 291 results • page 1 of 10 • next >
1
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87
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extracting atomic coordinates on UNIX
pdb written 11 days ago by corre027 • 10
0
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0
answers
137
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0
answers
how to download interface generated with PDBe PISA?
pdb pisa pdbe interfaces written 8 weeks ago by Hydrogen Bond • 0
1
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1
answer
428
views
1
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Biopython module Bio.PDB.DSSP issue with solvent accessible surface area?
pdb python biopython dssp written 9 months ago by westin.kosater • 10 • updated 8 weeks ago by dmitriy.bobrovnikov • 10
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2
answers
114
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2
answers
biopython.PDB residue.get_id() does not match sequence index
pdb mmcifparser neighborsearch biopython index written 9 weeks ago by stefan-3000 • 0 • updated 9 weeks ago by fishgolden • 420
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0
answers
129
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0
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Editing angles of PDB files
pdb python structural-biology written 11 weeks ago by michael • 0 • updated 10 weeks ago by Biostar ♦♦ 20
2
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1
answer
214
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1
answer
show location of amino acid corresponding to SNP in a PDB model
pdb snp written 4 months ago by theoharis • 20 • updated 11 weeks ago by Emily_Ensembl ♦ 20k
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2
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131
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2
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Calculating pI from structural information rather than sequences
pdb isoelectric point protein written 12 weeks ago by Joe ♦ 15k • updated 12 weeks ago by Mensur Dlakic • 2.4k
12
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3
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394
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5 follow
3
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How to "linearize" or "unfold" a PDB format structure to secondary structure?
pdb protein structure secondary structure written 3 months ago by Dr. Mabuse ♦ 47k
1
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2
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359
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5 follow
2
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how to extract HETATM structures from pdb with python
pdb written 3 months ago by woojoy14 • 0 • updated 3 months ago by fishgolden • 420
0
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0
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209
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0
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Error during parsing PDB using Biopython.
pdb biopython written 3 months ago by Manvitha Reddy • 10 • updated 3 months ago by Joe ♦ 15k
1
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0
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157
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0
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gene name to PDB ID - which database to download
gene pdb 3d protein structure written 4 months ago by theoharis • 20
2
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4
answers
4.5k
views
5 follow
4
answers
How To Download Atomic Coordinates For A Specific Chain From A Pdb File?
pdb written 7.4 years ago by edweena • 10 • updated 9 months ago by M.O.L.S • 10
1
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1
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287
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1
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Python: I have a list of probabilities, and I want to use them to generate mutations in a protein sequence
pdb python dssp written 10 months ago by westin.kosater • 10 • updated 10 months ago by e.benn • 110
11
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1
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8.6k
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8 follow
1
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Is There A Software For 3D Printing Of Pdb Structures?
pdb written 6.4 years ago by Dr. Mabuse ♦ 47k • updated 10 months ago by lindagrham21 • 0
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0
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314
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0
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PDB files how to identify drugs among small molecules
pdb search written 10 months ago by ankithan1712 • 0
0
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0
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578
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0
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Find mapping of indices of amino acid index in PDB files and sequence
pdb python sequence written 11 months ago by JJP • 0 • updated 11 months ago by natasha.sernova • 3.7k
2
votes
1
answer
385
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1
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Output all atoms within a sphere of 3 A of the center of Trypsine
pdb bioinformatics protein biopython python written 11 months ago by a4appy23 • 10 • updated 11 months ago by finswimmer ♦ 13k
0
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0
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723
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Bio.PDB parsing PDB file
pdb biopython written 11 months ago by Gunilla • 0
3
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1
answer
449
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1
answer
Putting atomic coordinates from PDB file into Pandas dataframe?
pdb python pandas written 12 months ago by westin.kosater • 10 • updated 12 months ago by RamRS ♦ 25k
3
votes
1
answer
1.0k
views
1
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Creating a distance matrix from PDB file coordinates (Python)
pdb python written 12 months ago by westin.kosater • 10 • updated 12 months ago by Joe ♦ 15k
0
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2
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428
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2
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PDB ids and Ensembl ID for gene sequence
gene pdb ensembl written 14 months ago by kingkenshin1997 • 0 • updated 12 months ago by Emily_Ensembl ♦ 20k
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0
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371
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0
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Find protein residues in PDB file that is the most exposed (and does not influence residues around it as much)
pdb sequence protein written 12 months ago by skim • 30
0
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0
answers
313
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0
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Map plasmodb gene ID to pdb crystal structure if exist
gene pdb id plasmodb structure written 14 months ago by db4 • 10 • updated 12 months ago by Biostar ♦♦ 20
7
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1
answer
573
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1
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Using STDIN with BioPython's PDB methods
pdb i/o stdin biopython pipes written 13 months ago by Joe ♦ 15k
0
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0
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391
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0
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Primary sequence of PDB id
pdb sequence protein written 13 months ago by Bioinformatics313 • 0
1
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1
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706
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1
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How can I use biopython to extract each alpha carbon from a PDB file?
pdb python biopython written 13 months ago by westin.kosater • 10
1
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1
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1.7k
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1
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Fetching data from https url with Python 3.7
pdb https written 14 months ago by konstanzeta • 0 • updated 14 months ago by Alex Reynolds ♦ 29k
1
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0
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561
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0
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How to get PDB IDs for many fasta sequences?
pdb python sequence written 14 months ago by sl_99 • 0 • updated 14 months ago by RamRS ♦ 25k
8
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3
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2.4k
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6 follow
3
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Problem To Convert Pdb Text File To Jmol Jar File
pdb java format file conversion written 9.4 years ago by Hazelin • 100 • updated 14 months ago by RamRS ♦ 25k
0
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0
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668
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0
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PDB files vs MOL files.
pdb mol written 18 months ago by advait.raykar • 0 • updated 15 months ago by Biostar ♦♦ 20
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