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3
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1.3k
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1
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Protein interaction experimental pdb data
pdb ppi protein interaction written 4.3 years ago by Bioaln • 340 • updated 3 days ago by Biostar ♦♦ 20
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0
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52
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0
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How to filter out the antibody light chains into kappa and lambda types on the PDB website?
pdb kappa antibody lambda light chain written 15 days ago by 272699575 • 0
1
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0
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70
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0
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Is there a list of the ligand functions?
pdb data ligand written 19 days ago by fann • 0
2
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1
answer
80
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1
answer
how to get secondary structure from DSSP?
pdb protein structure dssp written 20 days ago by Xylanaser • 60 • updated 20 days ago by Mensur Dlakic • 4.3k
3
votes
2
answers
104
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2
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Residues in contact with ligands in PDB files
pdb binding site protein ligand residues written 4 weeks ago by lumal29 • 30 • updated 4 weeks ago by Mensur Dlakic • 4.3k
0
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0
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124
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Looking for protein protein interaction known but not crystallized, where the single partners are crystallized
pdb bioinformatics ppi biology structural written 12 weeks ago by bobashinka • 0 • updated 5 weeks ago by Biostar ♦♦ 20
2
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0
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109
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0
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Single amino acid in a .pdb file and torsion angles
pdb ramachandran plot molecular dynamics written 6 weeks ago by Joshtron • 0
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0
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125
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0
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No output when trying to obtain protein sequence from PDB file
pdb biopython written 8 weeks ago by sayaneshome.rsg • 0 • updated 8 weeks ago by genomax ♦ 80k
0
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0
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158
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0
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How to produce a pdb file after introducing multiple point mutations?
pdb gromacs mutation mdsimulation snp written 11 weeks ago by karthikqk95 • 0
1
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1
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171
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1
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PSSMs for entire PDB
pdb pssm written 12 weeks ago by Simon • 0 • updated 12 weeks ago by Mensur Dlakic • 4.3k
1
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1
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166
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1
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extracting atomic coordinates on UNIX
pdb written 4 months ago by corre027 • 10
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0
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194
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0
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how to download interface generated with PDBe PISA?
pdb pisa pdbe interfaces written 5 months ago by Hydrogen Bond • 0
1
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1
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623
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1
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Biopython module Bio.PDB.DSSP issue with solvent accessible surface area?
pdb python biopython dssp written 13 months ago by westin.kosater • 20 • updated 5 months ago by dmitriy.bobrovnikov • 10
0
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2
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197
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2
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biopython.PDB residue.get_id() does not match sequence index
pdb mmcifparser neighborsearch biopython index written 6 months ago by stefan-3000 • 0 • updated 6 months ago by fishgolden • 420
0
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0
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186
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Editing angles of PDB files
pdb python structural-biology written 6 months ago by michael • 0 • updated 6 months ago by Biostar ♦♦ 20
2
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1
answer
258
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1
answer
show location of amino acid corresponding to SNP in a PDB model
pdb snp written 8 months ago by theoharis • 20 • updated 6 months ago by Emily_Ensembl ♦ 20k
0
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2
answers
201
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2
answers
Calculating pI from structural information rather than sequences
pdb isoelectric point protein written 6 months ago by Joe ♦ 16k • updated 6 months ago by Mensur Dlakic • 4.3k
12
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3
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489
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5 follow
3
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How to "linearize" or "unfold" a PDB format structure to secondary structure?
pdb protein structure secondary structure written 7 months ago by Michael Dondrup ♦ 47k
1
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2
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528
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5 follow
2
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how to extract HETATM structures from pdb with python
pdb written 7 months ago by woojoy14 • 0 • updated 7 months ago by fishgolden • 420
0
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0
answers
264
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0
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Error during parsing PDB using Biopython.
pdb biopython written 7 months ago by Manvitha Reddy • 10 • updated 7 months ago by Joe ♦ 16k
1
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0
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246
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0
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gene name to PDB ID - which database to download
gene pdb 3d protein structure written 8 months ago by theoharis • 20
2
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4
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4.7k
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5 follow
4
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How To Download Atomic Coordinates For A Specific Chain From A Pdb File?
pdb written 7.7 years ago by edweena • 10 • updated 13 months ago by M.O.L.S • 10
1
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1
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360
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1
answer
Python: I have a list of probabilities, and I want to use them to generate mutations in a protein sequence
pdb python dssp written 14 months ago by westin.kosater • 20 • updated 14 months ago by e.benn • 110
11
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1
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8 follow
1
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Is There A Software For 3D Printing Of Pdb Structures?
pdb written 6.8 years ago by Michael Dondrup ♦ 47k • updated 14 months ago by lindagrham21 • 0
0
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0
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378
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0
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PDB files how to identify drugs among small molecules
pdb search written 14 months ago by ankithan1712 • 0
0
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0
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708
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0
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Find mapping of indices of amino acid index in PDB files and sequence
pdb python sequence written 15 months ago by JJP • 0 • updated 15 months ago by natasha.sernova • 3.7k
2
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1
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470
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1
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Output all atoms within a sphere of 3 A of the center of Trypsine
pdb bioinformatics protein biopython python written 15 months ago by a4appy23 • 10 • updated 15 months ago by finswimmer ♦ 13k
0
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0
answers
981
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0
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Bio.PDB parsing PDB file
pdb biopython written 15 months ago by Gunilla • 0
3
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1
answer
552
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1
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Putting atomic coordinates from PDB file into Pandas dataframe?
pdb python pandas written 16 months ago by westin.kosater • 20 • updated 16 months ago by RamRS ♦ 26k
3
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1
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1.2k
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1
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Creating a distance matrix from PDB file coordinates (Python)
pdb python written 16 months ago by westin.kosater • 20 • updated 16 months ago by Joe ♦ 16k
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