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Recent Replies
Answer: pheatmap
by
georgii.vdovin
•
0
Hi, you could maybe try releveling the factor when you define them in your coldata, because otherwise it's alphabetic:
```r
colData$condit…
Comment: Issues with featureCounts
by
biofalconch
★
1.0k
What does the summary say? (featureCounts generates a summary file with different classifications, more about it on the subread manual unde…
Comment: TEtranscripts Tool in Galaxy
by
biofalconch
★
1.0k
Providing what you have already tried as well as the error messages you get can go a long way :). Nevertheless, here is the github repo fro…
Comment: Convert amino acid sequences into nucleotide sequences
by
Joe
21k
You will need to look at `seqkit`'s regex and other advanced matching tools in that case, since you can't use simple string matches.
…
Comment: How can I compute energy from a protein PDB file?
by
Matthias Zepper
4.1k
Not at all my field of expertise, but the [AMBER package][1] is what we used in our protein bioinfo classroom exercise back in the day. I t…
Comment: Convert amino acid sequences into nucleotide sequences
by
sperezilvia
▴
10
I have a problem. The SeqID from the nucleotide.fasta doesn't match with the SeqID from the protein.fasta because in the protein.fasta the …
Comment: How to plot coverage and depth statistics of a bam file
by
William
▴
20
Hi Jinli,
It seems to be related to the pandas version you are using. Which version are you using? Try to install the latest version and s…
Comment: QC of genetic data
by
kl
▴
10
Thanks for the advice. What about the third column (GS in plink). I am used to it being 0?
And last question, what does it mean when there …
Comment: Is there any way i can determine the kit used for library preparation for whole
by
ATpoint
77k
You can align the data and then determine coverage over the exons, then checking which kit (based on what they promise to capture) it fits …
Comment: Installation: Tax4Fun2 package are not found and github repository is not mainta
by
zx8754
11k
https://github.com/ZihaoShu/Tax4Fun2 has tar file `Tax4Fun2_1.1.5.tar.gz`, download and [install from source](https://stackoverflow.com/q/…
Answer: Bioinformatics short paper journal resource [software/webapps/database]
by
Gennady Khvorykh
▴
100
[NAR Genomics and Bioinformatics][1] also has Application Notes section for short (up to 3000 words) articles devoted to program, workflow,…
Comment: Bam sort merge error?
by
Pierre Lindenbaum
157k
it's just a log about : https://en.wikipedia.org/wiki/External_sorting and about https://en.wikipedia.org/wiki/Merge_sort
Answer: I need help with univariate logistic regression in a set of microarray data
by
DareDevil
★
3.3k
LR can be sensitive to the scale of your predictor variable. Since your gene expression values are all within a small range (between 8 and …
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