Biostar

0 results • Page 1 of 1

Topic contains no posts.

No posts found.

0 results • Page 1 of 1

Recent Votes

A: topGO which statistical test (fisher or KS) to use ?

Answer: I don't want to believe the Interproscan DB estimated download time.

Answer: WGCNA: many over and under-expressed features in modules of a signed network

Recent Locations • All

London, just now

Antarctica, just now

Switzerland, 1 minute ago

France, 2 minutes ago

Denmark, 2 minutes ago

United States, 3 minutes ago

Chile, 3 minutes ago

Recent Awards • All

Popular Question to modarzi ▴ 160

Recent Replies

Comment: readGenericHeader() error message Limma by Raony Guimarães ★ 1.2k

Can you post the error you are getting after renaming the colnames?

Answer: ABO alleles by Raony Guimarães ★ 1.2k

You could use a tool such as BOOGIE to infer the ABO alleles using VCF files: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4404330/

Answer: How to determine the exact version of hg38 if I have only the FASTA file by Raony Guimarães ★ 1.2k

You could use blastn to align your fasta reference against the other common fasta references and find out which one you have: blast …

Comment: Dada2 in Qiime2: losing reads during merging by andres.firrincieli 3.3k

Honestly, I would proceed only with the R1 reads however, you should probably post this question in the qiime2 forum. You can probably find…

Comment: I don't want to believe the Interproscan DB estimated download time. by gh • 0

Thank you!

Comment: What Are The Most Common Stupid Mistakes In Bioinformatics? by Raony Guimarães ★ 1.2k

You should also have told the correct command: grep '>' some.fasta And yes, of course, I did this before as well :D

Comment: WGCNA: many over and under-expressed features in modules of a signed network by andres.firrincieli 3.3k

> Ah, I just realized that I set the TOMType to signed. Is that > something different than the network type? It is a setting used for the …

Comment: Docker Error while running nf-core/rnaseq pipeline by eesha28112001 • 0

Okay, will do this! Using a Ubuntu subsystem on Windows so maybe it had something to do with that :(

Answer: Can any one suggest tools that generate "mind-maps" on concepts in biology/biote by Raony Guimarães ★ 1.2k

I don't know one specifically for biology but I would suggest [Miro][1] as a general-purpose mind mapping tool. [1]: https://miro.co…

Comment: mitochondrial genome, SRA PacBio sequencing. by GenoMax 129k

It does look like there are no PacBio datasets for insect mitogenomes. Not surprising since PacBio is more expensive compared to other sequ…

Comment: gatk Hardfilter Error by GenoMax 129k

I guess you changed the command in the original post since? I moved @Michael's comment to an answer. You can accept it (green check mark)…

Comment: WGCNA: many over and under-expressed features in modules of a signed network by Sebastian Hesse ▴ 320

Sorry, I forgot to add that code. I used the code below: bwnet_mrn <- blockwiseModules(exp_4wgcna_mrn, …

Comment: Alignment of case vs. control from different origin by i.sudbery 17k

If you are interested in network buiding, then case vs case is definately the way to go. In general, network building is an alternative to …

Comment: Docker Error while running nf-core/rnaseq pipeline by barslmn ★ 1.5k

You got some docker troubleshooting to do. Try reinstalling according to official documentation: https://docs.docker.com/engine/install/ Af…

Comment: Alignment of case vs. control from different origin by sativus • 0

Thank you for the extensive answer, i highly appreciate it! I understood the basics regarding the limitations of batch-effect errors from p…

Traffic: 2772 users visited in the last hour

Content Search
Users
Tags
Badges

Help About
FAQ

Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the

version 2.3.6