Showing: peak callingreset
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Processing ATAC-seq data after peak calling
peak calling sequencing written 3 months ago by anais139620 • updated 8 weeks ago by phosphodiester_bond20
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Is strand important when it comes to DNAse and ChIP-Seq peak calling?
genome gene dnase chip-seq peak calling written 3.1 years ago by ashah9030 • updated 3 months ago by Biostar ♦♦ 20
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Empty output from MACS2 when using control
peak calling macs2 chip-seq written 2.7 years ago by lm68750 • updated 3 months ago by oriolebaltimore60
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Comparison of replicates from NGS : merge before or after peak calling ?
peak calling ngs merge written 4 months ago by anais139620 • updated 4 months ago by h.mon20k
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Differential Peak Expression in ATAC-seq data
peak calling atac-seq differential expression written 22 months ago by ccag30 • updated 4 months ago by phosphodiester_bond20
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Using MACS2 for peak calling
peak calling atac-seq sequencing written 5 months ago by anais139620 • updated 5 months ago by Hussain Ather880
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Why do peak shifts occur?
peak calling written 7 months ago by anikethsuresh0 • updated 7 months ago by Friederike2.3k
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Help understanding MACS2 --extsize and --shift
peak calling macs2 atac-seq written 2.2 years ago by datascientist28350 • updated 14 months ago by xd_d90
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Define exact peak borders
macs peak calling written 15 months ago by ATpoint8.0k • updated 15 months ago by Charles Plessy2.5k
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Problems with MACS ChIP-Seq peak calling
macs peak calling chip-seq written 16 months ago by dcheng10 • updated 16 months ago by YaGalbi1.3k
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F-seq output: Meaning of bed columns
f-seq fseq peak calling written 4.1 years ago by dariober9.5k • updated 18 months ago by Art0
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Paired end and single end with MACS2
peak calling macs2 chip-seq written 20 months ago by hannafrida.klein30 • updated 20 months ago by Ian5.2k
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peak calling for cancer and healthy data?
macs peak calling chip-seq treatment and control written 3.6 years ago by ukpersia1 20 • updated 20 months ago by EagleEye5.7k
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Understanding ATAC-seq data
peak calling atac-seq sequencing written 20 months ago by Friederike2.3k • updated 20 months ago by Charles Plessy2.5k
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How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 2.7 years ago by mrs.hope10 • updated 22 months ago by 5694977350
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Peak center for ATAC-seq data
peak calling chip-seq atac-seq coverage plots written 23 months ago by christacaggiano20 • updated 23 months ago by igor6.8k
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MACS2 Optimal parameter identification
clip-seq peak calling chip-seq rna-seq written 2.6 years ago by onspotproductions120 • updated 23 months ago by Biostar ♦♦ 20
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Peak Detection in small RNA-seq data
macs peak calling rna-seq written 2.6 years ago by ks20 • updated 2.6 years ago by ablanchetcohen1.2k
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