Showing: peak callingreset
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32
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4
answers
8.7k
views
23 follow
4
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ChIP-Seq: Calling peaks with replicates
replicates peak calling chip-seq written 5.2 years ago by dariober10k • updated 5.2 years ago by Michele Busby2.1k
2
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4
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2.7k
views
4
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Empty output from MACS2 when using control
peak calling macs2 chip-seq written 3.8 years ago by lm68750 • updated 17 months ago by oriolebaltimore130
8
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3
answers
8.7k
views
3
answers
Peak Calling with MACS (treat and control samples)
macs peak calling chip-seq written 4.6 years ago by ukpersia1 20 • updated 4.6 years ago by Gary470
5
votes
3
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1.6k
views
6 follow
3
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Processing ATAC-seq data after peak calling
peak calling sequencing written 17 months ago by anais139620 • updated 15 months ago by phosphodiester_bond30
2
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2
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1.4k
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2
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F-seq output: Meaning of bed columns
f-seq fseq peak calling written 5.2 years ago by dariober10k • updated 8 months ago by vw20
3
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2
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1.6k
views
2
answers
peak calling for cancer and healthy data?
macs peak calling chip-seq treatment and control written 4.7 years ago by ukpersia1 20 • updated 2.8 years ago by EagleEye6.5k
5
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2
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1.9k
views
2
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Is strand important when it comes to DNAse and ChIP-Seq peak calling?
genome gene dnase chip-seq peak calling written 4.2 years ago by ashah9030 • updated 16 months ago by Biostar ♦♦ 20
2
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2
answers
2.5k
views
2
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MACS2 Optimal parameter identification
clip-seq peak calling chip-seq rna-seq written 3.7 years ago by onspotproductions140 • updated 3.1 years ago by Biostar ♦♦ 20
9
votes
2
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6.0k
views
2
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Help understanding MACS2 --extsize and --shift
peak calling macs2 atac-seq written 3.3 years ago by datascientist28410 • updated 2.3 years ago by xd_d90
33
votes
2
answers
16k
views
19 follow
2
answers
Understanding ATAC-seq data
peak calling atac-seq sequencing written 2.8 years ago by Friederike5.2k • updated 2.8 years ago by Charles Plessy2.7k
7
votes
2
answers
2.7k
views
2
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Paired end and single end with MACS2
peak calling macs2 chip-seq written 2.8 years ago by hannafrida.klein30 • updated 2.8 years ago by Ian5.5k
5
votes
2
answers
714
views
5 follow
2
answers
Ideas to split peaks into subpeaks - beyond PeakSplitter
peak calling wig chip-seq written 18 months ago by Sergio Martínez Cuesta60 • updated 11 months ago by Biostar ♦♦ 20
2
votes
2
answers
780
views
2
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eCLIP peak calling
macs peak calling clip galaxy written 12 months ago by GiusiG0 • updated 10 months ago by Ashley50
2
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1
answer
1.3k
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1
answer
5
votes
1
answer
4.0k
views
1
answer
Why is an Input file used as a control during MACS peak calling?
macs peak calling chip-seq written 4.3 years ago by christopher.mcnair0 • updated 4.3 years ago by geek_y10k
0
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1
answer
2.2k
views
1
answer
0
votes
1
answer
1.9k
views
1
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How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 3.8 years ago by mrs.hope10 • updated 2.9 years ago by 5694977350
1
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1
answer
1.8k
views
1
answer
Peak Detection in small RNA-seq data
macs peak calling rna-seq written 3.7 years ago by ks30 • updated 3.7 years ago by ablanchetcohen1.2k
0
votes
1
answer
1.1k
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1
answer
0
votes
1
answer
1.2k
views
1
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Current status of EPIC peak caller
epic peak calling chip-seq written 3.1 years ago by ariel.balter140 • updated 7 months ago by endrebak800
3
votes
1
answer
2.4k
views
1
answer
Peak center for ATAC-seq data
peak calling chip-seq atac-seq coverage plots written 3.0 years ago by christacaggiano30 • updated 3.0 years ago by igor8.8k
2
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1
answer
5.9k
views
1
answer
Differential Peak Expression in ATAC-seq data
peak calling atac-seq differential expression written 2.9 years ago by ccag30 • updated 17 months ago by phosphodiester_bond30
1
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1
answer
2.6k
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1
answer
1
vote
1
answer
1.5k
views
1
answer
Calling differential peaks on large set of 3 conditions
peak calling differential macs2 written 2.5 years ago by 141341254653464453.5k • updated 4 months ago by Grinch70
0
votes
1
answer
569
views
1
answer
Define exact peak borders
macs peak calling written 2.4 years ago by ATpoint26k • updated 2.4 years ago by Charles Plessy2.7k
9
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1
answer
1.6k
views
7 follow
1
answer
Why do peak shifts occur?
peak calling written 21 months ago by anikethsuresh20 • updated 21 months ago by Friederike5.2k
0
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1
answer
1.1k
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1
answer
Using MACS2 for peak calling
peak calling atac-seq sequencing written 19 months ago by anais139620 • updated 19 months ago by Hussain Ather940
0
votes
1
answer
743
views
1
answer
Comparison of replicates from NGS : merge before or after peak calling ?
peak calling ngs merge written 17 months ago by anais139620 • updated 17 months ago by h.mon28k
0
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1
answer
725
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1
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0
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1
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477
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1
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weird problem with summit.bed file from macs2
software error peak calling chip-seq sequencing written 17 months ago by mikysyc201660 • updated 17 months ago by jared.andrews074.0k
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