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32
votes
4
answers
9.6k
views
23 follow
4
answers
ChIP-Seq: Calling peaks with replicates
replicates peak calling chip-seq written 6.0 years ago by dariober11k • updated 6.0 years ago by Michele Busby2.1k
2
votes
4
answers
3.3k
views
4
answers
Empty output from MACS2 when using control
peak calling macs2 chip-seq written 4.7 years ago by lm68750 • updated 2.2 years ago by oriolebaltimore150
8
votes
3
answers
9.4k
views
3
answers
Peak Calling with MACS (treat and control samples)
macs peak calling chip-seq written 5.5 years ago by ukpersia1 20 • updated 5.5 years ago by Gary480
5
votes
3
answers
2.2k
views
6 follow
3
answers
Processing ATAC-seq data after peak calling
peak calling sequencing written 2.2 years ago by anais139630 • updated 2.1 years ago by phosphodiester_bond40
2
votes
2
answers
1.6k
views
2
answers
F-seq output: Meaning of bed columns
f-seq fseq peak calling written 6.0 years ago by dariober11k • updated 19 months ago by vw20
3
votes
2
answers
1.7k
views
2
answers
peak calling for cancer and healthy data?
macs peak calling chip-seq treatment and control written 5.5 years ago by ukpersia1 20 • updated 3.6 years ago by EagleEye6.7k
5
votes
2
answers
2.2k
views
2
answers
Is strand important when it comes to DNAse and ChIP-Seq peak calling?
genome gene dnase chip-seq peak calling written 5.1 years ago by ashah9030 • updated 2.2 years ago by Biostar ♦♦ 20
2
votes
2
answers
3.0k
views
2
answers
MACS2 Optimal parameter identification
clip-seq peak calling chip-seq rna-seq written 4.6 years ago by onspotproductions140 • updated 3.9 years ago by Biostar ♦♦ 20
12
votes
2
answers
7.6k
views
2
answers
Help understanding MACS2 --extsize and --shift
peak calling macs2 atac-seq written 4.1 years ago by datascientist28460 • updated 3.1 years ago by xd_d100
34
votes
2
answers
17k
views
19 follow
2
answers
Understanding ATAC-seq data
peak calling atac-seq sequencing written 3.7 years ago by Friederike6.1k • updated 3.7 years ago by Charles Plessy2.7k
8
votes
2
answers
3.6k
views
2
answers
Paired end and single end with MACS2
peak calling macs2 chip-seq written 3.6 years ago by hannafrida.klein30 • updated 3.6 years ago by Ian5.7k
5
votes
2
answers
3.2k
views
6 follow
2
answers
5
votes
2
answers
1.1k
views
5 follow
2
answers
Ideas to split peaks into subpeaks - beyond PeakSplitter
peak calling wig chip-seq written 2.4 years ago by Sergio Martínez Cuesta90 • updated 21 months ago by Biostar ♦♦ 20
2
votes
2
answers
1.4k
views
2
answers
eCLIP peak calling
macs peak calling clip galaxy written 23 months ago by GiusiG0 • updated 20 months ago by Ashley60
2
votes
1
answer
1.4k
views
1
answer
5
votes
1
answer
4.6k
views
1
answer
Why is an Input file used as a control during MACS peak calling?
macs peak calling chip-seq written 5.1 years ago by christopher.mcnair0 • updated 5.1 years ago by geek_y11k
0
votes
1
answer
2.5k
views
1
answer
0
votes
1
answer
2.3k
views
1
answer
How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 4.7 years ago by mrs.hope10 • updated 3.8 years ago by 5694977350
1
vote
1
answer
2.0k
views
1
answer
Peak Detection in small RNA-seq data
macs peak calling rna-seq written 4.5 years ago by ks30 • updated 4.5 years ago by ablanchetcohen1.2k
0
votes
1
answer
1.3k
views
1
answer
0
votes
1
answer
1.5k
views
1
answer
Current status of EPIC peak caller
epic peak calling chip-seq written 3.9 years ago by ariel.balter140 • updated 17 months ago by endrebak830
5
votes
1
answer
2.9k
views
1
answer
Peak center for ATAC-seq data
peak calling chip-seq atac-seq coverage plots written 3.8 years ago by christacaggiano50 • updated 3.8 years ago by igor11k
2
votes
1
answer
7.0k
views
1
answer
Differential Peak Expression in ATAC-seq data
peak calling atac-seq differential expression written 3.8 years ago by ccag30 • updated 2.3 years ago by phosphodiester_bond40
1
vote
1
answer
3.2k
views
1
answer
1
vote
1
answer
2.1k
views
1
answer
Calling differential peaks on large set of 3 conditions
peak calling differential macs2 written 3.4 years ago by 141341254653464453.5k • updated 14 months ago by Grinch90
0
votes
1
answer
680
views
1
answer
Define exact peak borders
macs peak calling written 3.2 years ago by ATpoint38k • updated 3.2 years ago by Charles Plessy2.7k
9
votes
1
answer
2.1k
views
7 follow
1
answer
Why do peak shifts occur?
peak calling written 2.6 years ago by anikethsuresh20 • updated 2.6 years ago by Friederike6.1k
0
votes
1
answer
1.5k
views
1
answer
Using MACS2 for peak calling
peak calling atac-seq sequencing written 2.4 years ago by anais139630 • updated 2.4 years ago by Hussain Ather940
0
votes
1
answer
1.1k
views
1
answer
Comparison of replicates from NGS : merge before or after peak calling ?
peak calling ngs merge written 2.3 years ago by anais139630 • updated 2.3 years ago by h.mon31k
0
votes
1
answer
1.2k
views
1
answer
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