Showing: peak callingreset
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Tutorial: Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data
peak calling tutorial chip-seq sequencing written 5.6 years ago by dnaseiseq200 • updated 5.6 years ago by Istvan Albert ♦♦ 81k
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F-seq output: Meaning of bed columns
f-seq fseq peak calling written 5.2 years ago by dariober10k • updated 8 months ago by vw20
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23 follow
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ChIP-Seq: Calling peaks with replicates
replicates peak calling chip-seq written 5.2 years ago by dariober10k • updated 5.2 years ago by Michele Busby2.1k
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peak calling for cancer and healthy data?
macs peak calling chip-seq treatment and control written 4.6 years ago by ukpersia1 20 • updated 2.8 years ago by EagleEye6.5k
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Peak Calling with MACS (treat and control samples)
macs peak calling chip-seq written 4.6 years ago by ukpersia1 20 • updated 4.6 years ago by Gary470
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Why is an Input file used as a control during MACS peak calling?
macs peak calling chip-seq written 4.3 years ago by christopher.mcnair0 • updated 4.3 years ago by geek_y10.0k
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Is strand important when it comes to DNAse and ChIP-Seq peak calling?
genome gene dnase chip-seq peak calling written 4.2 years ago by ashah9030 • updated 16 months ago by Biostar ♦♦ 20
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Empty output from MACS2 when using control
peak calling macs2 chip-seq written 3.8 years ago by lm68750 • updated 16 months ago by oriolebaltimore130
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How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 3.8 years ago by mrs.hope10 • updated 2.9 years ago by 5694977350
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MACS2 Optimal parameter identification
clip-seq peak calling chip-seq rna-seq written 3.7 years ago by onspotproductions140 • updated 3.1 years ago by Biostar ♦♦ 20
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Peak Detection in small RNA-seq data
macs peak calling rna-seq written 3.7 years ago by ks30 • updated 3.7 years ago by ablanchetcohen1.2k
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Help understanding MACS2 --extsize and --shift
peak calling macs2 atac-seq written 3.3 years ago by datascientist28410 • updated 2.3 years ago by xd_d90
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Current status of EPIC peak caller
epic peak calling chip-seq written 3.1 years ago by ariel.balter140 • updated 7 months ago by endrebak800
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Peak center for ATAC-seq data
peak calling chip-seq atac-seq coverage plots written 3.0 years ago by christacaggiano30 • updated 3.0 years ago by igor8.8k
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Differential Peak Expression in ATAC-seq data
peak calling atac-seq differential expression written 2.9 years ago by ccag30 • updated 17 months ago by phosphodiester_bond30
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19 follow
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Understanding ATAC-seq data
peak calling atac-seq sequencing written 2.8 years ago by Friederike5.2k • updated 2.8 years ago by Charles Plessy2.7k
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7
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Paired end and single end with MACS2
peak calling macs2 chip-seq written 2.8 years ago by hannafrida.klein30 • updated 2.8 years ago by Ian5.5k
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Calling differential peaks on large set of 3 conditions
peak calling differential macs2 written 2.5 years ago by 141341254653464453.5k • updated 3 months ago by Grinch70
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Problems with MACS ChIP-Seq peak calling
macs peak calling chip-seq written 2.5 years ago by dcheng10 • updated 2.5 years ago by YaGalbi1.4k
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Define exact peak borders
macs peak calling written 2.4 years ago by ATpoint25k • updated 2.4 years ago by Charles Plessy2.7k
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