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6
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Tutorial: Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data
peak calling tutorial chip-seq sequencing written 6.5 years ago by dnaseiseq210 • updated 6.5 years ago by Istvan Albert ♦♦ 85k
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5 follow
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Methylation Data Peak Calling
methylome peak calling bs-seq medip-seq written 6.2 years ago by Coby Viner40 • updated 9 months ago by Shicheng Guo8.3k
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F-seq output: Meaning of bed columns
f-seq fseq peak calling written 6.0 years ago by dariober11k • updated 19 months ago by vw20
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23 follow
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ChIP-Seq: Calling peaks with replicates
replicates peak calling chip-seq written 6.0 years ago by dariober11k • updated 6.0 years ago by Michele Busby2.1k
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peak calling for cancer and healthy data?
macs peak calling chip-seq treatment and control written 5.5 years ago by ukpersia1 20 • updated 3.7 years ago by EagleEye6.7k
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Peak Calling with MACS (treat and control samples)
macs peak calling chip-seq written 5.5 years ago by ukpersia1 20 • updated 5.5 years ago by Gary480
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Why is an Input file used as a control during MACS peak calling?
macs peak calling chip-seq written 5.2 years ago by christopher.mcnair0 • updated 5.2 years ago by geek_y11k
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Is strand important when it comes to DNAse and ChIP-Seq peak calling?
genome gene dnase chip-seq peak calling written 5.1 years ago by ashah9030 • updated 2.2 years ago by Biostar ♦♦ 20
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Empty output from MACS2 when using control
peak calling macs2 chip-seq written 4.7 years ago by lm68750 • updated 2.3 years ago by oriolebaltimore150
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How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 4.7 years ago by mrs.hope10 • updated 3.8 years ago by 5694977350
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MACS2 Optimal parameter identification
clip-seq peak calling chip-seq rna-seq written 4.6 years ago by onspotproductions140 • updated 3.9 years ago by Biostar ♦♦ 20
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Peak Detection in small RNA-seq data
macs peak calling rna-seq written 4.5 years ago by ks30 • updated 4.5 years ago by ablanchetcohen1.2k
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7.7k
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2
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Help understanding MACS2 --extsize and --shift
peak calling macs2 atac-seq written 4.1 years ago by datascientist28460 • updated 3.1 years ago by xd_d100
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Current status of EPIC peak caller
epic peak calling chip-seq written 4.0 years ago by ariel.balter140 • updated 17 months ago by endrebak840
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Peak center for ATAC-seq data
peak calling chip-seq atac-seq coverage plots written 3.9 years ago by christacaggiano50 • updated 3.9 years ago by igor11k
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Differential Peak Expression in ATAC-seq data
peak calling atac-seq differential expression written 3.8 years ago by ccag30 • updated 2.3 years ago by phosphodiester_bond40
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19 follow
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Understanding ATAC-seq data
peak calling atac-seq sequencing written 3.7 years ago by Friederike6.2k • updated 3.7 years ago by Charles Plessy2.7k
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8
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Paired end and single end with MACS2
peak calling macs2 chip-seq written 3.7 years ago by hannafrida.klein30 • updated 3.7 years ago by Ian5.7k
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Calling differential peaks on large set of 3 conditions
peak calling differential macs2 written 3.4 years ago by 141341254653464453.5k • updated 14 months ago by Grinch90
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Problems with MACS ChIP-Seq peak calling
macs peak calling chip-seq written 3.3 years ago by dcheng10 • updated 3.3 years ago by YaGalbi1.5k
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Define exact peak borders
macs peak calling written 3.3 years ago by ATpoint39k • updated 3.3 years ago by Charles Plessy2.7k
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