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Recent Replies

C: How many SNPs I should expect to see in a normal human embryonic stem cell (hESC by igor ♦ 7.4k
Yes. That is roughly normal. You might find these previous discussion helpful: - https://www.b...
C: DBI connect failed: orthomclLoadBlast by max_19 • 50
It's actually working now (I can access that specific DB from the cluster). apparently if you rem...
C: Are there any tools that can create a very basic GTF file from contig sequences by vkkodali • 1000
Typically, one uses a GTF file to represent annotation. Is your contig annotated? If not, you can...
C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov by genomax ♦ 64k
This may be another case where having overly deep coverage may be causing an issue. Why not just ...
A: Can Ncbi Blast Only Search A Special Region In Database For Hits? by vkkodali • 1000
If you have the fasta sequence of chr1 on disk, you can use the `-subject` and `-subject_loc` opt...
C: DESeq interactions: What genes that are different between two experiments affect by raquelgarza95 • 40
Thank you! This was very helpful.
C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov by snishtala03 • 0
I tried it that way too. I used clumpify on original data but still found a lot of duplicates. ...
C: DBI connect failed: orthomclLoadBlast by max_19 • 50
I will contact the cluster administrators then, thank you for the help! No that is not the actual...
C: Integrating EHR data with genomic data by Shicheng Guo • 7.4k
Any algorithm for adverse drug event detection?
C: DBI connect failed: orthomclLoadBlast by lieven.sterck ♦ 4.2k
voila there you have your answer: the 'max' account has no access to the mysql DB. create an acc...
C: Help with mRNA region annotation by lieven.sterck ♦ 4.2k
if the info that is present in your example is relevant, it will be definitely in the 3prime UTR
C: Subsampling one bamfile multiple times with 1x, 2x, 5x coverage? by wjdgmlcjf • 0
Sorry to ask this basic questions, but can you tell me how to determine fraction of bam file corr...

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