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<prev • 67 results • page 1 of 3 • next >
2
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1
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3.3k
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1
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Fixing "Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading."
genome hmmer pfam written 3.3 years ago by rpalmavejares • 20 • updated 7 days ago by GenoMax ♦ 95k
3
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2
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4.8k
views
2
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hmmindex: FATAL: failed to open HMM file Pfam-A.hmm for reading.
software error hmmer pfam sequencing written 5.7 years ago by dago • 2.6k • updated 16 days ago by sofie.thijs • 0
0
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0
answers
211
views
0
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hmmsearch error: Failed to open sequence file
hmmer hmmsearch pfam written 10 weeks ago by zoepklein • 0
0
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1
answer
186
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1
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Should I use HMMs from Pfam or build them from scratch?
bioinformatics hmm pfam written 3 months ago by garfield320 • 0 • updated 3 months ago by Mensur Dlakic • 8.3k
1
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1
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137
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1
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Protein Domain Characterization: Conflicting results from Interpro
interpro pfam written 3 months ago by venura • 60 • updated 3 months ago by Mensur Dlakic • 8.3k
0
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1
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535
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1
answer
Error in running PfamScan: Can't locate Bio/Pfam/Scan/PfamScan.pm in @INC
software error pfam pfamscan written 8 months ago by basusudipto92 • 0 • updated 4 months ago by neska • 0
0
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1
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1.9k
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1
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How to get pfam seed sequence taxonomy info?
ncbi taxonomy blast pfam written 5.6 years ago by beegrackle • 90 • updated 5 months ago by jubillante • 0
5
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1
answer
400
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1
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How to download a Pfam database for hmmer searches?
database hmmer pfam written 5 months ago by Audrey • 20
0
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1
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246
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1
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How do I get all sequences for one specific domain from Hmmer vs Pfam output that contains the results of many domains ?
domain hmmer pfam written 6 months ago by emilyc • 30 • updated 6 months ago by Mensur Dlakic • 8.3k
1
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1
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193
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1
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How to assign massive amount of protein to pfam using R
R pan-genome pfam written 7 months ago by zhangchi2015012290 • 0 • updated 7 months ago by Jean-Karim Heriche ♦ 24k
0
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0
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141
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0
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clustering pfams by function
pfam written 7 months ago by david.zlotkin • 0
0
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1
answer
207
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1
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How to get a snapshot for the content of some file on Pfam ?
pfam written 8 months ago by ahmedmelmoselhy • 20 • updated 8 months ago by MatthewP • 850
1
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2
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260
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2
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How to identify ZNFs from a gene list?
protein domain uniprot pfam written 10 months ago by Arindam Ghosh • 340 • updated 10 months ago by Pierre Lindenbaum ♦ 133k
0
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1
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222
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1
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Use of PFAM.db and select function
R bioconductor pfam written 10 months ago by l.willianpacheco • 0 • updated 10 months ago by mikroevdenevenakliyat • 0
0
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0
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254
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0
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Taxonomy from Pfam database
bioinformatics taxonomy pfam written 13 months ago by shibl_a • 20
3
votes
1
answer
396
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1
answer
pfam tigrfam mixed database
hmmpress pfam tigrfam hmmer written 14 months ago by Moses • 120 • updated 14 months ago by Mensur Dlakic • 8.3k
6
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1
answer
302
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1
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How a protein sequence is classified in a HMM
sequencing alignment pfam hmmscan hmmer written 14 months ago by cirooliveira3 • 10 • updated 14 months ago by Mensur Dlakic • 8.3k
0
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1
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2.2k
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1
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HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 18 months ago by Metaxo • 0 • updated 15 months ago by h.mon ♦ 32k
5
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0
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637
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5 follow
0
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InterProScan and HMMER - different results
interproscan hmmer pfam written 18 months ago by yp19 • 60 • updated 16 months ago by h.mon ♦ 32k
2
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1
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429
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1
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Sequence search of single variable domain against Pfam V-Set turns no results?
sequence alignment hmm pfam written 17 months ago by baverso • 0 • updated 17 months ago by GenoMax ♦ 95k
3
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1
answer
576
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1
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Performing Hmmer search against pfam versus UniRef100
pfam forum alignment hmmer written 17 months ago by baverso • 0 • updated 17 months ago by Mensur Dlakic • 8.3k
0
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0
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476
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0
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How to associate Pfam and Swissprot Proteins
alignment pfam written 17 months ago by ciro.ferreira.oliveira • 0
1
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1
answer
413
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1
answer
How to get the list of human domains in the PFAM database?
human domain pfam written 17 months ago by carlos_marchi • 60 • updated 17 months ago by h.mon ♦ 32k
3
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1
answer
4.4k
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1
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what are the differences between an hmmscan and a Pfamscan against PfamA?
hmm protein hmmscan pfam written 6.0 years ago by dago • 2.6k • updated 18 months ago by Biostar ♦♦ 20
3
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1
answer
338
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1
answer
Grouping protein domains into categories?
domain analysis pfam written 19 months ago by exin • 50 • updated 19 months ago by jgreener • 260
1
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0
answers
527
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0
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How to judge MSA from tree?
phylogeny alignment mafft muscle pfam written 2.1 years ago by deleted user • 0
3
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0
answers
1.2k
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0
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Where can I download ALL pfam flat-file annotations?
domain pfam annotations flat-files written 2.2 years ago by O.rka • 230 • updated 2.2 years ago by Biostar ♦♦ 20
0
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0
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757
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0
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Differences in hit number between Pfam, HMMER and searching UniProt with domain name
protein database alignment uniprot pfam hmmer written 2.2 years ago by deleted user • 0
5
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3
answers
1.8k
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3
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Best way to assign pfam/EC/COGs to a set of proteins
pfam protein enzyme cog written 2.5 years ago by predeus • 1.4k
4
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2
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1.3k
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2
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Pfam search uses seed or full alignments?
hmm pfam written 2.4 years ago by elenatea.russo • 20 • updated 2.4 years ago by tarakjang • 0
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