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Should I use HMMs from Pfam or build them from scratch?
bioinformatics hmm pfam written 8 days ago by garfield3200 • updated 8 days ago by Mensur Dlakic6.9k
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Protein Domain Characterization: Conflicting results from Interpro
interpro pfam written 9 days ago by venura50 • updated 9 days ago by Mensur Dlakic6.9k
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How to get pfam seed sequence taxonomy info?
ncbi taxonomy blast pfam written 5.4 years ago by beegrackle90 • updated 10 weeks ago by jubillante0
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How to assign massive amount of protein to pfam using R
R pan-genome pfam written 4 months ago by zhangchi20150122900 • updated 4 months ago by Jean-Karim Heriche23k
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clustering pfams by function
pfam written 4 months ago by david.zlotkin0
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How to get a snapshot for the content of some file on Pfam ?
pfam written 5 months ago by ahmedmelmoselhy20 • updated 5 months ago by MatthewP780
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How to identify ZNFs from a gene list?
protein domain uniprot pfam written 6 months ago by Arindam Ghosh310 • updated 6 months ago by Pierre Lindenbaum131k
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Use of PFAM.db and select function
R bioconductor pfam written 7 months ago by l.willianpacheco0 • updated 7 months ago by mikroevdenevenakliyat0
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pfam tigrfam mixed database
hmmpress pfam tigrfam hmmer written 10 months ago by Moses120 • updated 10 months ago by Mensur Dlakic6.9k
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How a protein sequence is classified in a HMM
sequencing alignment pfam hmmscan hmmer written 11 months ago by cirooliveira310 • updated 11 months ago by Mensur Dlakic6.9k
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HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 15 months ago by Metaxo0 • updated 11 months ago by h.mon31k
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InterProScan and HMMER - different results
interproscan hmmer pfam written 15 months ago by yp1960 • updated 12 months ago by h.mon31k
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Performing Hmmer search against pfam versus UniRef100
pfam forum alignment hmmer written 14 months ago by baverso0 • updated 14 months ago by Mensur Dlakic6.9k
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How to get the list of human domains in the PFAM database?
human domain pfam written 14 months ago by carlos_marchi60 • updated 14 months ago by h.mon31k
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what are the differences between an hmmscan and a Pfamscan against PfamA?
hmm protein hmmscan pfam written 5.7 years ago by dago2.6k • updated 15 months ago by Biostar ♦♦ 20
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Grouping protein domains into categories?
domain analysis pfam written 16 months ago by exin50 • updated 16 months ago by jgreener260
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Where can I download ALL pfam flat-file annotations?
domain pfam annotations flat-files written 23 months ago by O.rka210 • updated 23 months ago by Biostar ♦♦ 20
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Tutorial: Fixing "Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading."
genome tutorial hmmer pfam written 3.0 years ago by rpalmavejares20 • updated 23 months ago by h.mon31k
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Pfam search uses seed or full alignments?
hmm pfam written 2.1 years ago by elenatea.russo20 • updated 2.1 years ago by tarakjang0
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