Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 61 results • page 1 of 3 • next >
0
votes
0
answers
27
views
0
answers
clustering pfams by function
pfam written 5 days ago by david.zlotkin • 0
0
votes
0
answers
99
views
0
answers
Error in running PfamScan: Can't locate Bio/Pfam/Scan/PfamScan.pm in @INC
software error pfam pfamscan written 22 days ago by basusudipto92 • 0
0
votes
1
answer
85
views
1
answer
How to get a snapshot for the content of some file on Pfam ?
pfam written 4 weeks ago by ahmedmelmoselhy • 10 • updated 4 weeks ago by MatthewP • 620
1
vote
2
answers
147
views
2
answers
How to identify ZNFs from a gene list?
protein domain uniprot pfam written 9 weeks ago by Arindam Ghosh • 250 • updated 9 weeks ago by Pierre Lindenbaum ♦ 128k
0
votes
1
answer
104
views
1
answer
Use of PFAM.db and select function
R bioconductor pfam written 11 weeks ago by l.willianpacheco • 0 • updated 11 weeks ago by mikroevdenevenakliyat • 0
0
votes
0
answers
138
views
0
answers
Taxonomy from Pfam database
bioinformatics taxonomy pfam written 5 months ago by shibl_a • 20
3
votes
1
answer
198
views
1
answer
pfam tigrfam mixed database
hmmpress pfam tigrfam hmmer written 6 months ago by Moses • 120 • updated 6 months ago by Mensur Dlakic • 5.5k
6
votes
1
answer
192
views
1
answer
How a protein sequence is classified in a HMM
sequencing alignment pfam hmmscan hmmer written 6 months ago by cirooliveira3 • 10 • updated 6 months ago by Mensur Dlakic • 5.5k
0
votes
1
answer
1.1k
views
1
answer
HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 11 months ago by Metaxo • 0 • updated 7 months ago by h.mon ♦ 29k
4
votes
0
answers
336
views
0
answers
InterProScan and HMMER - different results
interproscan hmmer pfam written 11 months ago by yp19 • 50 • updated 8 months ago by h.mon ♦ 29k
2
votes
1
answer
323
views
1
answer
Sequence search of single variable domain against Pfam V-Set turns no results?
sequence alignment hmm pfam written 9 months ago by baverso • 0 • updated 9 months ago by genomax ♦ 84k
3
votes
1
answer
339
views
1
answer
Performing Hmmer search against pfam versus UniRef100
pfam forum alignment hmmer written 9 months ago by baverso • 0 • updated 9 months ago by Mensur Dlakic • 5.5k
0
votes
0
answers
324
views
0
answers
How to associate Pfam and Swissprot Proteins
alignment pfam written 9 months ago by ciro.ferreira.oliveira • 0
1
vote
1
answer
255
views
1
answer
How to get the list of human domains in the PFAM database?
human domain pfam written 9 months ago by carlos_marchi • 40 • updated 9 months ago by h.mon ♦ 29k
3
votes
1
answer
4.0k
views
1
answer
what are the differences between an hmmscan and a Pfamscan against PfamA?
hmm protein hmmscan pfam written 5.3 years ago by dago • 2.6k • updated 11 months ago by Biostar ♦♦ 20
3
votes
1
answer
251
views
1
answer
Grouping protein domains into categories?
domain analysis pfam written 11 months ago by exin • 50 • updated 11 months ago by jgreener • 240
1
vote
0
answers
403
views
0
answers
How to judge MSA from tree?
phylogeny alignment mafft muscle pfam written 17 months ago by deleted user • 0
3
votes
0
answers
872
views
0
answers
Where can I download ALL pfam flat-file annotations?
domain pfam annotations flat-files written 18 months ago by O.rka • 170 • updated 18 months ago by Biostar ♦♦ 20
2
votes
0
answers
2.5k
views
0
answers
Tutorial: Fixing "Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading."
genome tutorial hmmer pfam written 2.6 years ago by rpalmavejares • 20 • updated 18 months ago by h.mon ♦ 29k
0
votes
0
answers
610
views
0
answers
Differences in hit number between Pfam, HMMER and searching UniProt with domain name
protein database alignment uniprot pfam hmmer written 18 months ago by deleted user • 0
5
votes
3
answers
1.4k
views
3
answers
Best way to assign pfam/EC/COGs to a set of proteins
pfam protein enzyme cog written 23 months ago by predeus • 1.3k
4
votes
2
answers
922
views
2
answers
Pfam search uses seed or full alignments?
hmm pfam written 20 months ago by elenatea.russo • 20 • updated 20 months ago by tarakjang • 0
1
vote
1
answer
1.1k
views
1
answer
PFAM enrichment analysis of RNAseq data from Non-model organism
non-model organism enrichment analysis pfam written 2.1 years ago by Yunqing Yu • 0 • updated 21 months ago by Michael Dondrup ♦ 47k
0
votes
0
answers
554
views
0
answers
Forum: Clustering proteins by Pfam annotation
forum clustering pfam written 2.0 years ago by konstantinkul • 90
0
votes
0
answers
1.4k
views
0
answers
Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
hmmer protein pfam written 2.3 years ago by Xiaokang ZH • 40 • updated 2.2 years ago by Biostar ♦♦ 20
2
votes
0
answers
723
views
0
answers
Finding Human DUFs
protein domains of unkown fuction pfam written 2.2 years ago by cdsouthan • 1.8k
5
votes
1
answer
1.2k
views
1
answer
Pfam alignments: full vs uniprot
alignment pfam written 2.3 years ago by rayoub • 110 • updated 2.3 years ago by Bill Pearson • 860
0
votes
0
answers
624
views
0
answers
Get Domains found in proteins
protein pfam written 2.4 years ago by Eman.Ismaiel • 0
2
votes
1
answer
649
views
1
answer
Why do PFAM alignments contain 'X'?
pfam written 2.4 years ago by traviata • 10 • updated 2.4 years ago by mbens • 100
0
votes
0
answers
796
views
0
answers
Pfam/Hmmer redundant annotations
pfam annotations hmmer written 2.5 years ago by Selenocysteine • 600
<prev • 61 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • Seattle, WA USA, 2 minutes ago
  • Brazil, 4 minutes ago
  • India, 7 minutes ago
  • United States, 8 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 861 users visited in the last hour