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hmmindex: FATAL: failed to open HMM file Pfam-A.hmm for reading.
software error hmmer pfam sequencing written 5.7 years ago by dago2.6k • updated 16 days ago by sofie.thijs0
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Should I use HMMs from Pfam or build them from scratch?
bioinformatics hmm pfam written 3 months ago by garfield3200 • updated 3 months ago by Mensur Dlakic8.3k
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Protein Domain Characterization: Conflicting results from Interpro
interpro pfam written 3 months ago by venura60 • updated 3 months ago by Mensur Dlakic8.3k
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How to get pfam seed sequence taxonomy info?
ncbi taxonomy blast pfam written 5.6 years ago by beegrackle90 • updated 5 months ago by jubillante0
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How to assign massive amount of protein to pfam using R
R pan-genome pfam written 7 months ago by zhangchi20150122900 • updated 7 months ago by Jean-Karim Heriche24k
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clustering pfams by function
pfam written 7 months ago by david.zlotkin0
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How to get a snapshot for the content of some file on Pfam ?
pfam written 8 months ago by ahmedmelmoselhy20 • updated 8 months ago by MatthewP850
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How to identify ZNFs from a gene list?
protein domain uniprot pfam written 10 months ago by Arindam Ghosh340 • updated 10 months ago by Pierre Lindenbaum133k
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Use of PFAM.db and select function
R bioconductor pfam written 10 months ago by l.willianpacheco0 • updated 10 months ago by mikroevdenevenakliyat0
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pfam tigrfam mixed database
hmmpress pfam tigrfam hmmer written 14 months ago by Moses120 • updated 14 months ago by Mensur Dlakic8.3k
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How a protein sequence is classified in a HMM
sequencing alignment pfam hmmscan hmmer written 14 months ago by cirooliveira310 • updated 14 months ago by Mensur Dlakic8.3k
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HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 18 months ago by Metaxo0 • updated 15 months ago by h.mon32k
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InterProScan and HMMER - different results
interproscan hmmer pfam written 18 months ago by yp1960 • updated 16 months ago by h.mon32k
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Performing Hmmer search against pfam versus UniRef100
pfam forum alignment hmmer written 17 months ago by baverso0 • updated 17 months ago by Mensur Dlakic8.3k
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How to get the list of human domains in the PFAM database?
human domain pfam written 17 months ago by carlos_marchi60 • updated 17 months ago by h.mon32k
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what are the differences between an hmmscan and a Pfamscan against PfamA?
hmm protein hmmscan pfam written 6.0 years ago by dago2.6k • updated 18 months ago by Biostar ♦♦ 20
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Grouping protein domains into categories?
domain analysis pfam written 19 months ago by exin50 • updated 19 months ago by jgreener260
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Where can I download ALL pfam flat-file annotations?
domain pfam annotations flat-files written 2.2 years ago by O.rka230 • updated 2.2 years ago by Biostar ♦♦ 20
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Pfam search uses seed or full alignments?
hmm pfam written 2.4 years ago by elenatea.russo20 • updated 2.4 years ago by tarakjang0
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