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How to associate Pfam and Swissprot Proteins
alignment pfam written 4 days ago by ciro.ferreira.oliveira • 0
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59
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1
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How to get the list of human domains in the PFAM database?
human domain pfam written 6 days ago by carlos_marchi • 40 • updated 6 days ago by h.mon ♦ 27k
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HMMER: hmmscan ---> hmmsearch
hmm pfam protein hmmer written 5 weeks ago by Metaxo • 0
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what are the differences between an hmmscan and a Pfamscan against PfamA?
hmm protein hmmscan pfam written 4.5 years ago by dago • 2.5k • updated 6 weeks ago by Biostar ♦♦ 20
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Grouping protein domains into categories?
domain analysis pfam written 8 weeks ago by exin • 50 • updated 8 weeks ago by jgreener • 100
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How to judge MSA from tree?
phylogeny alignment mafft muscle pfam written 8 months ago by skvaller • 0
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Where can I download ALL pfam flat-file annotations?
domain pfam annotations flat-files written 9 months ago by O.rka • 110 • updated 8 months ago by Biostar ♦♦ 20
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Tutorial: Fixing "Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading."
genome tutorial hmmer pfam written 22 months ago by rpalmavejares • 20 • updated 9 months ago by h.mon ♦ 27k
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Differences in hit number between Pfam, HMMER and searching UniProt with domain name
protein database alignment uniprot pfam hmmer written 9 months ago by skvaller • 0
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Best way to assign pfam/EC/COGs to a set of proteins
pfam protein enzyme cog written 13 months ago by predeus • 1.2k
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Pfam search uses seed or full alignments?
hmm pfam written 11 months ago by elenatea.russo • 20 • updated 11 months ago by tarakjang • 0
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PFAM enrichment analysis of RNAseq data from Non-model organism
non-model organism enrichment analysis pfam written 15 months ago by Yunqing Yu • 0 • updated 12 months ago by Michael Dondrup ♦ 46k
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Forum: Clustering proteins by Pfam annotation
forum clustering pfam written 15 months ago by konstantinkul • 80
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Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
hmmer protein pfam written 18 months ago by Xiaokang ZH • 40 • updated 16 months ago by Biostar ♦♦ 20
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Finding Human DUFs
protein domains of unkown fuction pfam written 17 months ago by cdsouthan • 1.8k
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Pfam alignments: full vs uniprot
alignment pfam written 17 months ago by rayoub • 110 • updated 17 months ago by Bill Pearson • 860
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491
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Get Domains found in proteins
protein pfam written 19 months ago by Eman.Ismaiel • 0
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1
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Why do PFAM alignments contain 'X'?
pfam written 19 months ago by traviata • 10 • updated 19 months ago by mbens • 100
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570
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Pfam/Hmmer redundant annotations
pfam annotations hmmer written 20 months ago by Selenocysteine • 550
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Pfam annotations from UniProt
uniprot pfam written 22 months ago by Selenocysteine • 550 • updated 21 months ago by Puli Chandramouli Reddy • 180
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571
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Mapping PFAM Coordinates to RefSeq
ncbi refseq pfam written 23 months ago by vsivaranjanipriya • 30
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Filtering rows based on specific conditions
data filtering pfam written 2.2 years ago by Promi • 10 • updated 2.2 years ago by genomax ♦ 70k
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How to extract all Pfam Sequences with cleared PDB Structure?
pdb python pfam written 2.3 years ago by twinstar2 • 0
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751
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Mapping from TIGRFAM to PFAM
tigrfam pfam written 2.5 years ago by Selenocysteine • 550
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How to parse HMMSCAN output to enable comparison of domain architecture for several proteins
hmmer homology domain architecture pfam written 2.8 years ago by peter pfand • 80
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Extracting data from CDD and pfam
pfam cdd domains written 2.9 years ago by Harshal • 50
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Aligning Copies Of A Protein Domain To A Pfam Model (HMM)
alignment sequence hmm clustal omega pfam written 2.9 years ago by UnivStudent • 380
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Protein Domain Ontology
ontology protein domain tigrfam uniprot pfam written 2.9 years ago by hanchen1996 • 10
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Matching Uniprot position to Pfam HMM position
uniprot snp pfam written 3.0 years ago by agonic • 20
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What does the number after the dot in a PFAM accession mean?
pfam databases accession written 3.1 years ago by genomeandahalf • 40 • updated 3.0 years ago by Biostar ♦♦ 20
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