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Showing: pfam • reset
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<prev • 43 results • page 1 of 2 • next >
3
votes
2
answers
92
views
2
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Pfam search uses seed or full alignments?
hmm pfam written 28 days ago by elenatea.russo • 10 • updated 28 days ago by tarakjang • 0
3
votes
3
answers
579
views
3
answers
Best way to assign pfam/EC/COGs to a set of proteins
pfam protein enzyme cog written 3 months ago by predeus • 660 • updated 6 weeks ago by Carambakaracho • 550
1
vote
1
answer
332
views
1
answer
PFAM enrichment analysis of RNAseq data from Non-model organism
non-model organism enrichment analysis pfam written 5 months ago by Yunqing Yu • 0 • updated 8 weeks ago by Michael Dondrup ♦ 44k
0
votes
0
answers
186
views
0
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Forum: Clustering proteins by Pfam annotation
forum clustering pfam written 4 months ago by konstantinkul • 70
0
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0
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519
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0
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Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
hmmer protein pfam written 8 months ago by Xiaokang ZH • 40 • updated 6 months ago by Biostar ♦♦ 20
2
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0
answers
279
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0
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Finding Human DUFs
protein domains of unkown fuction pfam written 7 months ago by cdsouthan • 1.8k
5
votes
1
answer
326
views
1
answer
Pfam alignments: full vs uniprot
alignment pfam written 7 months ago by rayoub • 100 • updated 7 months ago by Bill Pearson • 820
0
votes
0
answers
324
views
0
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Get Domains found in proteins
protein pfam written 9 months ago by Eman.Ismaiel • 0
2
votes
1
answer
305
views
1
answer
Why do PFAM alignments contain 'X'?
pfam written 9 months ago by traviata • 0 • updated 9 months ago by mbens • 100
0
votes
0
answers
335
views
0
answers
Pfam/Hmmer redundant annotations
pfam annotations hmmer written 10 months ago by Selenocysteine • 510
2
votes
1
answer
791
views
1
answer
Pfam annotations from UniProt
uniprot pfam written 12 months ago by Selenocysteine • 510 • updated 11 months ago by Puli Chandramouli Reddy • 150
0
votes
0
answers
783
views
0
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Error: Unrecognized format, trying to open hmm file Pfam-A.hmm for reading. FIX
genome hmmer pfam written 12 months ago by rpalmavejares • 0
0
votes
0
answers
348
views
0
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Mapping PFAM Coordinates to RefSeq
ncbi refseq pfam written 13 months ago by vsivaranjanipriya • 20
0
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0
answers
474
views
0
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Filtering rows based on specific conditions
data filtering pfam written 16 months ago by Promi • 10 • updated 16 months ago by genomax ♦ 57k
0
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1
answer
717
views
1
answer
How to extract all Pfam Sequences with cleared PDB Structure?
pdb python pfam written 17 months ago by twinstar2 • 0
0
votes
0
answers
519
views
0
answers
Mapping from TIGRFAM to PFAM
tigrfam pfam written 20 months ago by Selenocysteine • 510
0
votes
0
answers
829
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0
answers
How to parse HMMSCAN output to enable comparison of domain architecture for several proteins
hmmer homology domain architecture pfam written 23 months ago by peter pfand • 70
0
votes
0
answers
681
views
0
answers
Extracting data from CDD and pfam
pfam cdd domains written 2.0 years ago by Harshal • 50
0
votes
0
answers
818
views
0
answers
Aligning Copies Of A Protein Domain To A Pfam Model (HMM)
alignment sequence hmm clustal omega pfam written 2.1 years ago by UnivStudent • 380
0
votes
0
answers
642
views
0
answers
Protein Domain Ontology
ontology protein domain tigrfam uniprot pfam written 2.1 years ago by hanchen1996 • 10
0
votes
0
answers
859
views
0
answers
Matching Uniprot position to Pfam HMM position
uniprot snp pfam written 2.1 years ago by agonic • 20
4
votes
0
answers
780
views
0
answers
What does the number after the dot in a PFAM accession mean?
pfam databases accession written 2.3 years ago by genomeandahalf • 40 • updated 2.2 years ago by Biostar ♦♦ 20
2
votes
0
answers
743
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0
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Gene ontology-type analysis but with protein domain IDs? (e.g. TIGRFAM, PFAM)
hmm analysis tigrfam gene ontology pfam written 2.2 years ago by O.rka • 50
1
vote
1
answer
1.8k
views
1
answer
how to get protein motif sequence from pfam database?
sequence pfam written 2.3 years ago by Haifeng • 20
1
vote
0
answers
947
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0
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extracting domain regions from PDB
pdb domain pfam written 2.4 years ago by a.abnousi • 30
0
votes
0
answers
993
views
0
answers
Different Pfam and SMART protein domains..
smart protein domain pfam written 2.5 years ago by kajaenilsen • 10
0
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0
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875
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0
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Gene ontology type analysis for pfam/tigrfams ?
gene enrichment ontology hmm pfam written 2.6 years ago by jolespin • 110
0
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1
answer
1.0k
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1
answer
Running Interproscan on the cluster
domain interproscan pfam prodomain written 2.6 years ago by seta • 1.0k
3
votes
1
answer
1.4k
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1
answer
Database to download HMMs for TIGRFAMS and PFAMS ?
database tigrfam motif hidden markov model pfam written 3.0 years ago by jolespin • 110 • updated 3.0 years ago by Siva • 1.6k
3
votes
2
answers
920
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2
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Database that has all known proteins associated with a particular PFAM or TIGRFAM?
gene database tigrfam protein pfam written 3.2 years ago by jolespin • 110 • updated 3.2 years ago by David Westergaard • 1.4k
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