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5
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5 follow
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How to phase my own 23andMe data ?
23andme phasing snp written 1 day ago by LouisJoubert • 10 • updated 21 hours ago by Charles Warden ♦ 7.4k
0
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0
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91
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Problems installing shapeit
shapeit phasing written 10 days ago by michael.flower.14 • 0
0
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1
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66
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1
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transmitted and untransmitted alleles
hapmap haplotype snp phasing written 11 days ago by yh362 • 30 • updated 10 days ago by Kevin Blighe ♦ 51k
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0
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170
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Is it acceptable to use ShapeIT for parasite genomes?
shapeit impute2 haplotype phasing beagle written 3 months ago by nataliagru1 • 30 • updated 7 weeks ago by Biostar ♦♦ 20
0
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125
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hapcut2 output and figures
hapcut2 phasing written 10 weeks ago by rob234king • 580
1
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221
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0
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Parent of Origin analysis in trio dataset
trio parent of origin vcftoos phasing premim written 4 months ago by a.zore2 • 10 • updated 3 months ago by Biostar ♦♦ 20
0
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0
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191
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BEAGLE 4.0 with ped file output into Refined IBD not identifying segments properly
software error pedigree refined ibd phasing beagle written 4 months ago by LTDavid • 20
0
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1
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206
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1
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refine population phased haplotypes by pedigree
pedigree population genotype phasing written 8 months ago by samuelandjw • 20 • updated 3 months ago by bmstudent • 0
1
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1
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179
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1
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Merge phased files from ShapeIT
shapeit phasing written 4 months ago by nataliagru1 • 30 • updated 4 months ago by Charles Warden ♦ 7.4k
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209
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Running beagle 5.0 Refined-IBD with no map file gives an empty output
refined-ibd phasing beagle written 5 months ago by wz • 0
1
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0
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129
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0
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Genotype phasing with lack of parental information - compound heterozygous
trio genotype phasing sequencing written 5 months ago by vntt2407 • 10
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0
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186
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0
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mutation phasing of a family data
exome family phasing snp written 7 months ago by sagardesai91 • 50 • updated 5 months ago by Biostar ♦♦ 20
0
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206
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SHAPEIT - getting 'Segmentation fault'
shapeit haplotyping haplotype phasing written 5 months ago by Larson • 0
3
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1
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521
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1
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searching tool for calculating switch/phase error rate
vcf variants phasing whatshap written 8 months ago by WouterDeCoster ♦ 42k • updated 6 months ago by soulsacross • 60
9
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2.1k
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Convert IMPUTE2 to VCF while keeping phase information
vcf impute2 phasing conversion written 4.0 years ago by lkmklsmn • 890 • updated 7 months ago by croshong75 • 0
0
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0
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246
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Phasing genotype likelihood data and merging them with phased genotype calls data.
genotype likelihood phasing genotype calls written 7 months ago by Mr Locuace • 90
2
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1
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440
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1
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Genotype phased and unphased
vcf phasing genotype snp written 7 months ago by manjumoorthy95 • 20 • updated 7 months ago by Pierre Lindenbaum ♦ 124k
0
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402
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Genotyped SNPs were lost after michigan imputation server imputation and phasing
imputation michigan phasing written 11 months ago by Shicheng Guo • 7.8k
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256
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0
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Please help with Eagle
eagle vcf phasing written 11 months ago by seta • 1.2k • updated 11 months ago by zx8754 ♦ 8.4k
2
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1.1k
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VCF file phasing by SHAPEIT
vcf whole genome shapiet phasing written 11 months ago by seta • 1.2k
3
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665
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Where To Get The Genetic Map For The Haplotype Reference Consortium to phase the data externally using SHAPEIT software with family information
genome gwas shapeit phasing hrc written 12 months ago by moldach • 130
3
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2
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870
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Is there a tool or method for phasing a VCF based on an already phased BAM?
vcf haplotype phasing bam written 12 months ago by olavur • 100
0
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0
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498
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Issue with bcftools csq phasing
phasing genotyping written 13 months ago by shubhra.bhattacharya • 120
0
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1
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284
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1
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Shapeit2 - malformed hap file output?
phasing snp shapeit2 written 13 months ago by mstagliamonte • 0
0
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1
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1.0k
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1
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SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 2.2 years ago by c_barbarosie • 0 • updated 13 months ago by chariko • 30
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3
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3
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How to add custom fields to the VCF files?
vcf annotation phasing snp manipulation written 3.2 years ago by kirannbishwa01 • 1.1k • updated 14 months ago by sm.hashemin • 90
4
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1
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477
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1
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phase a non-model genome
phasing written 14 months ago by devon.orourke • 10
0
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0
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386
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Phasing non-human genomes with Beagle - do I need to divide subjects by population?
snp phasing beagle written 14 months ago by mstagliamonte • 0
0
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0
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459
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0
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Benchmarking datasets for Haplotype phasing
genome shapeit haplotype na12891 phasing written 15 months ago by kirannbishwa01 • 1.1k
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324
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0
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Phase 2.1 - question about input file
phase 2.1 phasing snp written 16 months ago by mstagliamonte • 0
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