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<prev • 56 results • page 1 of 2 • next >
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use gatk phased vcf as input file of HapCut2
hapcut2 gatk vcf phasing written 15 days ago by Peter Chung • 70 • updated 5 days ago by Ram ♦ 15k
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haplotype phasing in duos
haplotype phasing duos rna-seq trios written 24 days ago by lait • 80
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Statistical Genetics - What information is required for haplotype phasing in a novel, admixed population?
exome haplotype admixture phasing written 5 weeks ago by anp375 • 140
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extractPIRs is throwing an ERROR
shapeit extractpirs phasing written 5 weeks ago by nkausthu • 20 • updated 5 weeks ago by genomax ♦ 47k
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Interpreting phased data from Beagle
haplotype imputation genotype phasing beagle written 11 weeks ago by chadapohn.chaosrikul • 0
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Phasing without a reference panel
hapmap population genotype phasing written 3 months ago by chadapohn.chaosrikul • 0 • updated 3 months ago by Wietje • 120
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Plink. Convert ped files of artificially mixed population into vcf using recode
vcf plink phasing written 4 months ago by Mr Locuace • 80 • updated 4 months ago by Wietje • 120
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Problem phasing Indels
indels phasing beagle written 5 months ago by hdtms • 10
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301
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phasing variants produced by varscan
gatk trio analysis varscan phasing variants written 5 months ago by lait • 80
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6 follow
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Can phasing or pre-phase during basecall cause indel?
indel phasing written 5 months ago by CY • 130 • updated 5 months ago by Kevin Blighe ♦ 19k
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Converting BED files for SHAPEIT and IMPUTE2
alignment imputation phasing written 6 months ago by gty18 • 0
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Is this a good workflow to find denovo mutations in trios?
whole exome sequencing denovo phasing trios written 6 months ago by lait • 80
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5 follow
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phasing variants to find de novos
de novo ngs phasing whole exome sequencing written 6 months ago by lait • 80 • updated 6 months ago by Len Trigg • 1.1k
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SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 8 months ago by c_barbarosie • 0
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Is there a phasing algorithm or tool that first determines undeniably present haplotypes?
hardy weinberg haplotype phasing beagle written 9 months ago by anp375 • 140
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error when using shapeit2 phasing with vcf from GATK
vcf shapeit phasing written 9 months ago by Loveinheaven • 0 • updated 9 months ago by h.mon ♦ 14k
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Phasing alleles, indel gap filled with reference.
allele alignment samtools phasing snp written 10 months ago by Vincent Manzanilla • 20
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Beagle Error Reading in .PL file
genome phasing beagle written 10 months ago by karl.fetter • 0
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HapCUT2 using GATK results
hapcut2 gatk vcf phasing written 16 months ago by jyu429 • 120 • updated 10 months ago by lloydlow • 0
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Where is "inference" applied in Haplotype inference?
haplotyping haplotype phase inference phasing written 13 months ago by veronicaschroeder78 • 100
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What's the difference between Phased Haplotypes and Phased Genotypes?
haplotypes haploview genotypes phasing plink written 13 months ago by veronicaschroeder78 • 100
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Does HaploView perform phasing?
haplotypes haploview phase phasing fastphase written 14 months ago by veronicaschroeder78 • 100
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From PHASE to HaploView
haplotypes phase visualization haploview phasing written 14 months ago by veronicaschroeder78 • 100
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Eagle phasing and minimac imputation
eagle minimac imputation genotypes phasing written 14 months ago by dp0b • 30
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Confused about Effective Population size
shapeit effective population size phasing ne written 14 months ago by andreagarcia871 • 50
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How to separate the haplotype in a hybrid given phase states in two different blocks?
vcf python haplotype phasing snp written 15 months ago by kirannbishwa01 • 790
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Tool: Read-based phasing with WhatsHap
tool phasing written 17 months ago by Marcel M • 70 • updated 17 months ago by t.marschall • 20
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How to phase my genome from FamilyTreeDNA to haplotypes
hapmap familytreedna snphap phasing beagle written 19 months ago by alexey.minko • 0
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Should variant phasing be performed before or after filtering by Minor Allele Frequency?
maf gwas phasing beagle written 22 months ago by i.wilson • 10 • updated 19 months ago by Biostar ♦♦ 20
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How to add custom fields to the VCF files?
vcf annotation phasing snp manipulation written 21 months ago by kirannbishwa01 • 790 • updated 20 months ago by Biostar ♦♦ 20
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