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<prev • 71 results • page 1 of 3 • next >
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Genotyped SNPs were lost after michigan imputation server imputation and phasing
imputation michigan phasing written 26 days ago by Shicheng Guo • 7.3k
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Please help with Eagle
eagle vcf phasing written 4 weeks ago by seta • 1.1k • updated 29 days ago by zx8754 ♦ 6.2k
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VCF file phasing by SHAPEIT
vcf whole genome shapiet phasing written 6 weeks ago by seta • 1.1k
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Where To Get The Genetic Map For The Haplotype Reference Consortium to phase the data externally using SHAPEIT software with family information
genome gwas shapeit phasing hrc written 8 weeks ago by moldach • 110
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Is there a tool or method for phasing a VCF based on an already phased BAM?
vcf haplotype phasing bam written 9 weeks ago by olavur • 70
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Issue with bcftools csq phasing
phasing genotyping written 12 weeks ago by shubhra.bhattacharya • 120
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Shapeit2 - malformed hap file output?
phasing snp shapeit2 written 12 weeks ago by mstagliamonte • 0
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SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 16 months ago by c_barbarosie • 0 • updated 12 weeks ago by chariko • 30
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How to add custom fields to the VCF files?
vcf annotation phasing snp manipulation written 2.4 years ago by kirannbishwa01 • 900 • updated 4 months ago by sm.hashemin • 60
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phase a non-model genome
phasing written 4 months ago by devon.orourke • 0
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Phasing non-human genomes with Beagle - do I need to divide subjects by population?
snp phasing beagle written 4 months ago by mstagliamonte • 0
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198
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Benchmarking datasets for Haplotype phasing
genome shapeit haplotype na12891 phasing written 4 months ago by kirannbishwa01 • 900
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Phase 2.1 - question about input file
phase 2.1 phasing snp written 5 months ago by mstagliamonte • 0
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haplotype phasing in duos
haplotype phasing duos rna-seq trios written 8 months ago by lait • 120 • updated 6 months ago by mike • 50
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SHAPEIT Segmentation Fault on Input Read-In
genome phasing written 6 months ago by nnn1 • 0
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Phasing Confidence Values using Shapeit2
haplotype estimation wgs phasing shapeit2 written 7 months ago by Mike Vermeulen • 0
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5 follow
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How do variant callers get genotype info?
variant calling indel snp phasing written 7 months ago by afzm • 20 • updated 7 months ago by Jeremy Leipzig ♦ 18k
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Genotype representation with 0, 1, 2 - what do they mean?
representation imputation genotype phasing gwas written 7 months ago by Volka • 30
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Convert IMPUTE2 to VCF while keeping phase information
vcf impute2 phasing conversion written 3.1 years ago by lkmklsmn • 860 • updated 7 months ago by Biostar ♦♦ 20
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use gatk phased vcf as input file of HapCut2
hapcut2 gatk vcf phasing written 8 months ago by Peter Chung • 70 • updated 8 months ago by RamRS ♦ 20k
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Statistical Genetics - What information is required for haplotype phasing in a novel, admixed population?
exome haplotype admixture phasing written 9 months ago by anp375 • 140
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extractPIRs is throwing an ERROR
shapeit extractpirs phasing written 9 months ago by nkausthu • 20 • updated 9 months ago by genomax ♦ 60k
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Interpreting phased data from Beagle
haplotype imputation genotype phasing beagle written 10 months ago by chadapohn.chaosrikul • 0
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Phasing without a reference panel
hapmap population genotype phasing written 11 months ago by chadapohn.chaosrikul • 0 • updated 11 months ago by Wietje • 170
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Plink. Convert ped files of artificially mixed population into vcf using recode
vcf plink phasing written 12 months ago by Mr Locuace • 80 • updated 12 months ago by Wietje • 170
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Problem phasing Indels
indels phasing beagle written 13 months ago by hdtms • 20
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phasing variants produced by varscan
gatk trio analysis varscan phasing variants written 13 months ago by lait • 120
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5 follow
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Can phasing or pre-phase during basecall cause indel?
indel phasing written 13 months ago by CY • 270 • updated 13 months ago by Kevin Blighe ♦ 35k
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Converting BED files for SHAPEIT and IMPUTE2
alignment imputation phasing written 14 months ago by gty18 • 0
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Is this a good workflow to find denovo mutations in trios?
whole exome sequencing denovo phasing trios written 14 months ago by lait • 120
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