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<prev • 82 results • page 1 of 3 • next >
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BEAGLE 4.0 with ped file output into Refined IBD not identifying segments properly
software error pedigree refined ibd phasing beagle written 1 day ago by LTDavid • 0
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78
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1
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Merge phased files from ShapeIT
shapeit phasing written 5 days ago by nataliagru1 • 20 • updated 4 days ago by Charles Warden ♦ 7.0k
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130
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Parent of Origin analysis in trio dataset
trio parent of origin vcftoos phasing premim written 26 days ago by a.zore2 • 10 • updated 26 days ago by RamRS ♦ 23k
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Running beagle 5.0 Refined-IBD with no map file gives an empty output
refined-ibd phasing beagle written 4 weeks ago by wz • 0
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Genotype phasing with lack of parental information - compound heterozygous
trio genotype phasing sequencing written 5 weeks ago by vntt2407 • 0
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mutation phasing of a family data
exome family phasing snp written 3 months ago by sagardesai91 • 50 • updated 6 weeks ago by Biostar ♦♦ 20
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SHAPEIT - getting 'Segmentation fault'
shapeit haplotyping haplotype phasing written 8 weeks ago by Larson • 0
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324
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1
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searching tool for calculating switch/phase error rate
vcf variants phasing whatshap written 4 months ago by WouterDeCoster ♦ 40k • updated 9 weeks ago by soulsacross • 60
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Convert IMPUTE2 to VCF while keeping phase information
vcf impute2 phasing conversion written 3.6 years ago by lkmklsmn • 890 • updated 3 months ago by croshong75 • 0
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139
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Phasing genotype likelihood data and merging them with phased genotype calls data.
genotype likelihood phasing genotype calls written 3 months ago by Mr Locuace • 90
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266
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1
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Genotype phased and unphased
vcf phasing genotype snp written 3 months ago by manjumoorthy95 • 10 • updated 3 months ago by Pierre Lindenbaum ♦ 121k
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133
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refine population phased haplotypes by pedigree
pedigree population genotype phasing written 4 months ago by samuelandjw • 20
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Genotyped SNPs were lost after michigan imputation server imputation and phasing
imputation michigan phasing written 7 months ago by Shicheng Guo • 7.6k
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Please help with Eagle
eagle vcf phasing written 7 months ago by seta • 1.2k • updated 7 months ago by zx8754 ♦ 7.8k
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VCF file phasing by SHAPEIT
vcf whole genome shapiet phasing written 7 months ago by seta • 1.2k
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Where To Get The Genetic Map For The Haplotype Reference Consortium to phase the data externally using SHAPEIT software with family information
genome gwas shapeit phasing hrc written 8 months ago by moldach • 130
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657
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Is there a tool or method for phasing a VCF based on an already phased BAM?
vcf haplotype phasing bam written 8 months ago by olavur • 100
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Issue with bcftools csq phasing
phasing genotyping written 9 months ago by shubhra.bhattacharya • 120
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1
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Shapeit2 - malformed hap file output?
phasing snp shapeit2 written 9 months ago by mstagliamonte • 0
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SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 22 months ago by c_barbarosie • 0 • updated 9 months ago by chariko • 30
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How to add custom fields to the VCF files?
vcf annotation phasing snp manipulation written 2.9 years ago by kirannbishwa01 • 1.0k • updated 10 months ago by sm.hashemin • 80
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phase a non-model genome
phasing written 10 months ago by devon.orourke • 10
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Phasing non-human genomes with Beagle - do I need to divide subjects by population?
snp phasing beagle written 10 months ago by mstagliamonte • 0
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Benchmarking datasets for Haplotype phasing
genome shapeit haplotype na12891 phasing written 11 months ago by kirannbishwa01 • 1.0k
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Phase 2.1 - question about input file
phase 2.1 phasing snp written 12 months ago by mstagliamonte • 0
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haplotype phasing in duos
haplotype phasing duos rna-seq trios written 15 months ago by lait • 130 • updated 12 months ago by mike • 50
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SHAPEIT Segmentation Fault on Input Read-In
genome phasing written 12 months ago by nnn1 • 0
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Phasing Confidence Values using Shapeit2
haplotype estimation wgs phasing shapeit2 written 13 months ago by Mike Vermeulen • 0
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395
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5 follow
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How do variant callers get genotype info?
variant calling indel snp phasing written 13 months ago by afzm • 20 • updated 13 months ago by Jeremy Leipzig ♦ 18k
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Genotype representation with 0, 1, 2 - what do they mean?
representation imputation genotype phasing gwas written 13 months ago by Volka • 50
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