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<prev • 43 results • page 1 of 2 • next >
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SHAPEIT error after run: x samples are included in several duos/trios
shapeit inferring haplotypes phasing snp written 22 days ago by c_barbarosie • 0
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Is there a phasing algorithm or tool that first determines undeniably present haplotypes?
hardy weinberg haplotype phasing beagle written 8 weeks ago by anp375 • 80
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error when using shapeit2 phasing with vcf from GATK
vcf shapeit phasing written 8 weeks ago by Loveinheaven • 0 • updated 8 weeks ago by h.mon ♦ 8.7k
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Phasing alleles, indel gap filled with reference.
allele alignment samtools phasing snp written 10 weeks ago by Vincent Manzanilla • 0
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Beagle Error Reading in .PL file
genome phasing beagle written 10 weeks ago by karl.fetter • 0
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HapCUT2 using GATK results
hapcut2 gatk vcf phasing written 8 months ago by jyu429 • 120 • updated 11 weeks ago by lloydlow • 0
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Where is "inference" applied in Haplotype inference?
haplotyping haplotype phase inference phasing written 5 months ago by veronicaschroeder78 • 100
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What's the difference between Phased Haplotypes and Phased Genotypes?
haplotypes haploview genotypes phasing plink written 5 months ago by veronicaschroeder78 • 100
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Does HaploView perform phasing?
haplotypes haploview phase phasing fastphase written 6 months ago by veronicaschroeder78 • 100
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297
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From PHASE to HaploView
haplotypes phase visualization haploview phasing written 6 months ago by veronicaschroeder78 • 100
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Eagle phasing and minimac imputation
eagle minimac imputation genotypes phasing written 6 months ago by dp0b • 20
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Confused about Effective Population size
shapeit effective population size phasing ne written 6 months ago by andreagarcia871 • 40
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How to separate the haplotype in a hybrid given phase states in two different blocks?
vcf python haplotype phasing snp written 8 months ago by kirannbishwa01 • 530
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Tool: Read-based phasing with WhatsHap
tool phasing written 9 months ago by Marcel M • 70 • updated 9 months ago by t.marschall • 20
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How to phase my genome from FamilyTreeDNA to haplotypes
hapmap familytreedna snphap phasing beagle written 11 months ago by alexey.minko • 0
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Should variant phasing be performed before or after filtering by Minor Allele Frequency?
maf gwas phasing beagle written 14 months ago by i.wilson • 10 • updated 11 months ago by Biostar ♦♦ 20
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How to add custom fields to the VCF files?
vcf annotation phasing snp manipulation written 13 months ago by kirannbishwa01 • 530 • updated 12 months ago by Biostar ♦♦ 20
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Where to find a list of known SNP's for a given genomic region
snp phasing written 13 months ago by richardsw • 0 • updated 13 months ago by morovatunc • 360
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How to phase a WGS dataset preserving the indels within it?
genome indel snp phasing sequencing written 16 months ago by Shab86 • 190 • updated 16 months ago by piet • 1.4k
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Haplotype phasing for non-human model organism
shapeit impute2 haplotype phasing beagle written 16 months ago by kirannbishwa01 • 530 • updated 16 months ago by Zev.Kronenberg ♦ 11k
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Calling inheritance from phased/unphased genotype data
de novo dnaseq phasing inheritance written 20 months ago by ebrown1955 • 270
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Convert IMPUTE2 to VCF while keeping phase information
vcf impute2 phasing conversion written 21 months ago by lkmklsmn • 720
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Can germline vs somatic variants be distinguished by phasing when no control is available?
sequencing somatic germline phasing variants written 21 months ago by amjad • 20 • updated 21 months ago by donfreed • 1.1k
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Is it better to phase two populations together or separately?
populations phasing beagle written 22 months ago by eyb • 130 • updated 22 months ago by Giovanni M Dall'Olio ♦ 25k
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Phasing a portion of chromosome vs whole chromosome using Beagle?
snp phasing beagle written 23 months ago by alek0991 • 0 • updated 22 months ago by Biostar ♦♦ 20
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is it possible to Improve the Phasing of Family Trios using both GATK PhaseByTransmission and ReadBackedPhasing?
latest readbackedphasing tool phasing gatk written 23 months ago by shajib.sust • 20 • updated 23 months ago by Ashutosh Pandey ♦ 11k
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SHAPEIT allele encoding
shapeit plink phasing written 23 months ago by andreagarcia871 • 40
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How does GATK PhaseByTransmission define the phasing of Father and Mother?
latest phasebytransmission phasing gatk written 23 months ago by shajib.sust • 20
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phase genotype data (infer haplotypes) for multiple families
software haplotype family data phasing beagle written 2.1 years ago by teresa.fazia01 • 0 • updated 2.0 years ago by Biostar ♦♦ 20
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Background information and recommendations for phasing ASW whole genomes
ngs phasing beagle written 3.4 years ago by vlaufer • 240 • updated 2.1 years ago by Biostar ♦♦ 20
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