Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 95 results • page 1 of 4 • next >
1
vote
1
answer
67
views
1
answer
Transferring Phase information from one VCF to another
vcf phasing written 16 days ago by ma17 • 10 • updated 15 days ago by WouterDeCoster ♦ 43k
0
votes
0
answers
76
views
0
answers
Forum: Phasing with Falcon
assembly phasing tutorial falcon phase forum written 19 days ago by Juke-34 • 3.6k
0
votes
0
answers
263
views
0
answers
Is it acceptable to use ShapeIT for parasite genomes?
shapeit impute2 haplotype phasing beagle written 8 months ago by nataliagru1 • 30 • updated 21 days ago by Biostar ♦♦ 20
1
vote
1
answer
77
views
1
answer
Shapeit2 cannot open reference panel
gwas phasing shapeit2 written 6 weeks ago by sunnysean • 20 • updated 6 weeks ago by Kevin Blighe ♦ 56k
1
vote
1
answer
98
views
1
answer
Genetic map for chromosome X that shows recombination rates?
shapeit phasing written 6 weeks ago by curious • 250 • updated 6 weeks ago by Kevin Blighe ♦ 56k
0
votes
0
answers
60
views
0
answers
Trouble understanding Eagle2 phasing software "--allowRefAltSwap" flag
eagle phasing written 7 weeks ago by curious • 250
0
votes
0
answers
125
views
0
answers
Evaluating switch error rate when phasing with Eagle2?
eagle gwas phasing beagle written 9 weeks ago by curious • 250
0
votes
0
answers
97
views
0
answers
When using Eagle, is the X chromosome typically phased without including pseudoautosomal regions?
eagle phasing written 10 weeks ago by curious • 250
0
votes
0
answers
126
views
0
answers
Hapblock from snp file
vcf snp haplotype haplogroup phasing written 3 months ago by devarora • 110
5
votes
1
answer
247
views
5 follow
1
answer
How to phase my own 23andMe data ?
23andme phasing snp written 4 months ago by LouisJoubert • 10 • updated 4 months ago by Charles Warden ♦ 7.6k
1
vote
0
answers
266
views
0
answers
Problems installing shapeit
shapeit phasing written 4 months ago by michael.flower.14 • 0
1
vote
1
answer
193
views
1
answer
transmitted and untransmitted alleles
hapmap haplotype snp phasing written 4 months ago by yh362 • 30 • updated 4 months ago by Kevin Blighe ♦ 56k
0
votes
0
answers
226
views
0
answers
hapcut2 output and figures
hapcut2 phasing written 6 months ago by rob234king • 580
1
vote
0
answers
290
views
0
answers
Parent of Origin analysis in trio dataset
trio parent of origin vcftoos phasing premim written 9 months ago by a.zore2 • 10 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
302
views
0
answers
BEAGLE 4.0 with ped file output into Refined IBD not identifying segments properly
software error pedigree refined ibd phasing beagle written 8 months ago by LTDavid • 20
0
votes
1
answer
284
views
1
answer
refine population phased haplotypes by pedigree
pedigree population genotype phasing written 13 months ago by samuelandjw • 20 • updated 8 months ago by bmstudent • 0
1
vote
1
answer
259
views
1
answer
Merge phased files from ShapeIT
shapeit phasing written 8 months ago by nataliagru1 • 30 • updated 8 months ago by Charles Warden ♦ 7.6k
0
votes
0
answers
350
views
0
answers
Running beagle 5.0 Refined-IBD with no map file gives an empty output
refined-ibd phasing beagle written 9 months ago by wz • 0
1
vote
0
answers
196
views
0
answers
Genotype phasing with lack of parental information - compound heterozygous
trio genotype phasing sequencing written 9 months ago by vntt2407 • 10
0
votes
0
answers
235
views
0
answers
mutation phasing of a family data
exome family phasing snp written 11 months ago by sagardesai91 • 50 • updated 9 months ago by Biostar ♦♦ 20
0
votes
0
answers
317
views
0
answers
SHAPEIT - getting 'Segmentation fault'
shapeit haplotyping haplotype phasing written 10 months ago by Larson • 0
3
votes
1
answer
744
views
1
answer
searching tool for calculating switch/phase error rate
vcf variants phasing whatshap written 12 months ago by WouterDeCoster ♦ 43k • updated 10 months ago by soulsacross • 60
13
votes
1
answer
2.3k
views
1
answer
Convert IMPUTE2 to VCF while keeping phase information
vcf impute2 phasing conversion written 4.3 years ago by lkmklsmn • 920 • updated 11 months ago by croshong75 • 0
0
votes
0
answers
358
views
0
answers
Phasing genotype likelihood data and merging them with phased genotype calls data.
genotype likelihood phasing genotype calls written 11 months ago by Mr Locuace • 100
2
votes
1
answer
728
views
1
answer
Genotype phased and unphased
vcf phasing genotype snp written 11 months ago by manjumoorthy95 • 20 • updated 11 months ago by Pierre Lindenbaum ♦ 127k
0
votes
0
answers
525
views
0
answers
Genotyped SNPs were lost after michigan imputation server imputation and phasing
imputation michigan phasing written 15 months ago by Shicheng Guo • 8.1k
0
votes
0
answers
332
views
0
answers
Please help with Eagle
eagle vcf phasing written 15 months ago by seta • 1.2k • updated 15 months ago by zx8754 ♦ 9.1k
2
votes
1
answer
1.5k
views
1
answer
VCF file phasing by SHAPEIT
vcf whole genome shapiet phasing written 16 months ago by seta • 1.2k
3
votes
0
answers
888
views
0
answers
Where To Get The Genetic Map For The Haplotype Reference Consortium to phase the data externally using SHAPEIT software with family information
genome gwas shapeit phasing hrc written 16 months ago by moldach • 130
3
votes
2
answers
1.1k
views
2
answers
Is there a tool or method for phasing a VCF based on an already phased BAM?
vcf haplotype phasing bam written 16 months ago by olavur • 100
<prev • 95 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • United States, 2 minutes ago
  • United States, 3 minutes ago
  • Montreal, 5 minutes ago
  • United States, 5 minutes ago
  • National University of Ireland, Galway, 5 minutes ago
  • United States, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1292 users visited in the last hour