phevor Posts

C: What is the normal N50 range when assembly the virus genome. by h.mon ♦ 15k
Blast **all** contigs, my experience is just a few or even one is the viral genome, the rest is h...
A: Differences in exon number from Biopython Entrez Package and ANNOVAR by Kevin Blighe ♦ 21k
Hello and good evening, ANNOVAR is correct. For that particular transcript isoform, NM_00128647...
C: Get variant position knowing the gene name, base change, and NM# by bisansamara • 10
This is super easy! Thanks.
C: Best method for orthology prediction of more than two protein datasets by Mehmet • 370
Hi, Can you describe what you done to eliminate redundant sequences? how did you obtain your pro...
C: Clustering of DAVID gene enrichment results from gene expression studies by Kevin Blighe ♦ 21k
Thanks, vchris_ngs. It is difficult to automate this process, which is why I just put the code here.
C: Get variant position knowing the gene name, base change, and NM# by cpad0112 ♦ 6.3k
use [transvar][1]. Convrt your first and second columns to some thing like this:`MAN1B1:c.1897G &...
C: Get variant position knowing the gene name, base change, and NM# by Pierre Lindenbaum ♦ 108k
see https://www.biostars.org/p/15992/ ;
C: Clustering of DAVID gene enrichment results from gene expression studies by vchris_ngs • 4.5k
Very useful and a great way to look that data will multi feature. Will give it a try. Great resou...
C: Download latest reference genome assembly for exome sequencing alignment and var by svlachavas • 440
Dear genomax, thank you for your information and comments- actually whole exome sequencing has ...
C: Error while executing "estimateSizeFactors" from DESeq2 by genomax ♦ 49k
No problem. Formatting `code` makes it easy to read.
C: Download latest reference genome assembly for exome sequencing alignment and var by genomax ♦ 49k
GRCh38 reference assembly is identical every where and original release did occur in December 201...
C: Error while executing "estimateSizeFactors" from DESeq2 by vkgaur25 • 10
Point noted ! Sorry for this time. Thanks