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Can i use consensus phylogenetic tree for calculation of dn/ds via codeml?
phylogenetic tree codeml positive selection written 4 weeks ago by rprog008 • 30
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445
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How do I show bootstrap values in the phylogenetic tree using R?
R phylogenetic tree phytools written 7 months ago by lhernanj • 0
3
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253
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0
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FastTree trifurcating Root node
alignment phylogenetic tree fasttree written 3 months ago by Moses • 60
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0
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972
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0
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Estimation of haplotype block frequency and phylogentic analysis
phylogenetic tree hapltype frequency estimation written 3.7 years ago by kumar.vinod81 • 280 • updated 4 months ago by Biostar ♦♦ 20
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184
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Extracting sequence names from phylogenetic tree (in newick format or MEGA)?
phylogenetic tree written 4 months ago by johnnytam100 • 100
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2
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1.5k
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6 follow
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How to convert fasta file format to phylip file format
fasta R phylogenetic tree phylip ggtree written 8 months ago by Mike • 1.3k • updated 7 months ago by Guangchuang Yu • 2.1k
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226
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Reconstructing phylogenetic tree from set of bipartitions
phylogenetic tree bipartitions splits written 7 months ago by balanand.jha • 0
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1
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594
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1
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Phylogenetic tree from single copy core genes (metazoa proteomes)
phylogenetic tree single copy genes written 8 months ago by Elizabeth • 20
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240
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Getting 16 sRna sequence for phylogenetic analysis
fasta header 16s rrna phylogenetic tree silva written 9 months ago by kodo64 • 0
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3.2k
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0
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Plotting traits on phylogenetic tree in R - issue with aligning traits
traits R phylogenetic tree graphics written 3.9 years ago by ch_at • 10 • updated 10 months ago by Biostar ♦♦ 20
1
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1
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370
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1
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Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 11 months ago by neutrinoscientist • 0 • updated 11 months ago by Jean-Karim Heriche ♦ 18k
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0
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331
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Analyse diversity in nucleotide sequences of one gene
phylogenetic tree pca snp written 13 months ago by khhgng • 60 • updated 12 months ago by Biostar ♦♦ 20
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0
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565
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Analyzing .fasta file.
phylogenetic tree .fasta protein evolution written 12 months ago by jaqx008 • 40
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1
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1.2k
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1
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How to use R programming for MSA and phylogenetics analysis?
fasta R phylogenetic tree protein alignment written 14 months ago by Wuschel • 120 • updated 14 months ago by Jean-Karim Heriche ♦ 18k
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1
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602
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1
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Make fasta sequence of specific lengths from Vcf file of specific lengths
vcf gatk phylogenetic tree fastareference snp written 15 months ago by shreyasibiswas88 • 30 • updated 15 months ago by WouterDeCoster ♦ 38k
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5 follow
1
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plot phylogenetic tree with Figtree
phylogenetic tree figtree written 16 months ago by zhang248 • 30
3
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0
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794
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What is the best bootstrap replicates I can use?
sequence phylogenetic tree bootstrap written 17 months ago by a.alsayed.phd • 10
1
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1
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900
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1
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Bootstrap & p distance distribution
phylogenetic tree msa sequencing written 18 months ago by a.alsayed.phd • 10 • updated 18 months ago by Kevin Blighe ♦ 41k
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524
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Why the scale bar greyed out in Mega 5.0 when making a phylogenetic tree?
scale bar phylogenetic tree mega5 alignment written 20 months ago by yimu.yang • 0
3
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1
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946
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1
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Zero length branches on a phylogram
mega7 phylogenetic tree written 21 months ago by nancydong20 • 80 • updated 21 months ago by Sergey Naumenko • 350
1
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1
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743
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1
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Cardinality Vs Degree of a node in phylogenetic tree
degree basics phylogenetic tree cardinality written 23 months ago by balanand.jha • 0
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1
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2.2k
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1
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How to make a rooted tree ultrametric
cafe phylogenetic tree ultrametric written 23 months ago by nancydong20 • 80 • updated 23 months ago by a.zielezinski ♦ 8.6k
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Is it possible to plot a radiation tree with ggtree? how?
ggtree phylogenetic tree radiation written 24 months ago by Hongru • 0 • updated 24 months ago by Joseph Hughes • 2.7k
2
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1
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788
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1
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Suggestions for Visualization of Domain Architecture Evolution, Through Phylogenetic Tree
domain phylogenetic tree visualization written 2.5 years ago by hanchen1996 • 10 • updated 2.0 years ago by Biostar ♦♦ 20
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1
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1.2k
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1
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multiple alignment of multiple genes to generate a phylogenetic tree
phylogenetic tree written 2.1 years ago by qwzhang0601 • 60 • updated 2.1 years ago by jrj.healey ♦ 12k
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813
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I only get three bootstrap values to my phylogenetic tree
mega7 phylogenetic tree values bootstrap mega written 2.1 years ago by metamorphosesgirl • 0
1
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1
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663
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1
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Using ete3 without knowing tree topology
ete3 phylogenetic tree written 2.2 years ago by jyu429 • 120 • updated 2.1 years ago by Biostar ♦♦ 20
6
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2
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719
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2
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Recommendations about phylogenetic analysis tools for RFLP/AFLP/RAPD data
tools phylogenetic tree written 2.1 years ago by JL • 0 • updated 2.1 years ago by Burnedthumb • 90
0
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1
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638
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1
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phylip format from Mummer
phylogenetic tree phylip run-mummer 3 written 2.1 years ago by micro32uvas • 10 • updated 2.1 years ago by ALchEmiXt • 1.9k
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1.2k
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1
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Confusion regarding generating phylogenetic tree from snp data
snps phylogenetic tree written 2.1 years ago by ehzed • 30 • updated 2.1 years ago by Petr Ponomarenko • 2.6k
<prev • 69 results • page 1 of 3 • next >
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