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How do I show bootstrap values in the phylogenetic tree using R?
R phylogenetic tree phytools written 5 months ago by lhernanj • 0
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174
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FastTree trifurcating Root node
alignment phylogenetic tree fasttree written 5 weeks ago by Moses • 50
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Estimation of haplotype block frequency and phylogentic analysis
phylogenetic tree hapltype frequency estimation written 3.5 years ago by kumar.vinod81 • 280 • updated 9 weeks ago by Biostar ♦♦ 20
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108
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Extracting sequence names from phylogenetic tree (in newick format or MEGA)?
phylogenetic tree written 10 weeks ago by johnnytam100 • 100
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6 follow
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How to convert fasta file format to phylip file format
fasta R phylogenetic tree phylip ggtree written 5 months ago by Mike • 1.1k • updated 5 months ago by Guangchuang Yu • 2.1k
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Reconstructing phylogenetic tree from set of bipartitions
phylogenetic tree bipartitions splits written 5 months ago by balanand.jha • 0
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461
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Phylogenetic tree from single copy core genes (metazoa proteomes)
phylogenetic tree single copy genes written 6 months ago by Elizabeth • 10
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Getting 16 sRna sequence for phylogenetic analysis
fasta header 16s rrna phylogenetic tree silva written 7 months ago by kodo64 • 0
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Plotting traits on phylogenetic tree in R - issue with aligning traits
traits R phylogenetic tree graphics written 3.7 years ago by ch_at • 10 • updated 8 months ago by Biostar ♦♦ 20
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Phylogeny tree from a set of taxa
taxa species phylogenetic tree newick taxonomy written 8 months ago by neutrinoscientist • 0 • updated 8 months ago by Jean-Karim Heriche ♦ 18k
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302
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Analyse diversity in nucleotide sequences of one gene
phylogenetic tree pca snp written 11 months ago by khhgng • 60 • updated 9 months ago by Biostar ♦♦ 20
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481
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Analyzing .fasta file.
phylogenetic tree .fasta protein evolution written 10 months ago by jaqx008 • 40
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How to use R programming for MSA and phylogenetics analysis?
fasta R phylogenetic tree protein alignment written 12 months ago by BIOAWY • 110 • updated 12 months ago by Jean-Karim Heriche ♦ 18k
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Make fasta sequence of specific lengths from Vcf file of specific lengths
vcf gatk phylogenetic tree fastareference snp written 13 months ago by shreyasibiswas88 • 30 • updated 13 months ago by WouterDeCoster ♦ 36k
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5 follow
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plot phylogenetic tree with Figtree
phylogenetic tree figtree written 14 months ago by zhang248 • 30
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What is the best bootstrap replicates I can use?
sequence phylogenetic tree bootstrap written 15 months ago by a.alsayed.phd • 10
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1
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1
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Bootstrap & p distance distribution
phylogenetic tree msa sequencing written 15 months ago by a.alsayed.phd • 10 • updated 15 months ago by Kevin Blighe ♦ 37k
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Why the scale bar greyed out in Mega 5.0 when making a phylogenetic tree?
scale bar phylogenetic tree mega5 alignment written 18 months ago by yimu.yang • 0
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827
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Zero length branches on a phylogram
mega7 phylogenetic tree written 19 months ago by nancydong20 • 80 • updated 19 months ago by Sergey Naumenko • 340
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1
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661
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1
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Cardinality Vs Degree of a node in phylogenetic tree
degree basics phylogenetic tree cardinality written 21 months ago by balanand.jha • 0
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1
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How to make a rooted tree ultrametric
cafe phylogenetic tree ultrametric written 21 months ago by nancydong20 • 80 • updated 21 months ago by a.zielezinski ♦ 8.5k
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Is it possible to plot a radiation tree with ggtree? how?
ggtree phylogenetic tree radiation written 21 months ago by Hongru • 0 • updated 21 months ago by Joseph Hughes • 2.7k
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Suggestions for Visualization of Domain Architecture Evolution, Through Phylogenetic Tree
domain phylogenetic tree visualization written 2.4 years ago by hanchen1996 • 10 • updated 22 months ago by Biostar ♦♦ 20
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multiple alignment of multiple genes to generate a phylogenetic tree
phylogenetic tree written 22 months ago by qwzhang0601 • 60 • updated 22 months ago by jrj.healey ♦ 10k
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740
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I only get three bootstrap values to my phylogenetic tree
mega7 phylogenetic tree values bootstrap mega written 23 months ago by metamorphosesgirl • 0
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620
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1
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Using ete3 without knowing tree topology
ete3 phylogenetic tree written 24 months ago by jyu429 • 120 • updated 23 months ago by Biostar ♦♦ 20
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2
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Recommendations about phylogenetic analysis tools for RFLP/AFLP/RAPD data
tools phylogenetic tree written 23 months ago by JL • 0 • updated 23 months ago by Burnedthumb • 90
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589
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phylip format from Mummer
phylogenetic tree phylip run-mummer 3 written 23 months ago by micro32uvas • 10 • updated 23 months ago by ALchEmiXt • 1.9k
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Confusion regarding generating phylogenetic tree from snp data
snps phylogenetic tree written 23 months ago by ehzed • 30 • updated 23 months ago by Petr Ponomarenko • 2.6k
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1
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Phylogenetic Tree to compare my sequences to a database
bioinformatics phylogenetic tree written 23 months ago by Neuls • 0 • updated 23 months ago by abascalfederico • 1.0k
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