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4
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1
answer
819
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6 follow
1
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phylogenetic tree analyse
phylogenetic written 3.6 years ago by elisheva • 100
3
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3
answers
5.2k
views
7 follow
3
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Get phylogenetic tree from abundance table
phylogenetic ncbi newick written 3.4 years ago by David • 170
2
votes
1
answer
513
views
5 follow
1
answer
Calculating trait disparity between sister species
phylogenetic R morphology written 2.0 years ago by modernsynthesis • 30 • updated 2.0 years ago by mbranco • 0
0
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2
answers
1.6k
views
2
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Phylogenetic Analysis In Eukaryotes
phylogenetic written 8.4 years ago by rajarapu.gangadher • 70 • updated 10 months ago by zx8754 ♦ 9.6k
2
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1
answer
2.1k
views
1
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Cut a tree based on time t
phylogenetic R trees written 5.9 years ago by tutoring891 • 0 • updated 5.9 years ago by Chrispin Chaguza • 260
2
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2
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1.5k
views
2
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What type of tree do phylogenetic trees use?
phylogenetic tree trees written 5.9 years ago by n00514450 • 20 • updated 5.9 years ago by DG ♦ 7.1k
2
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1
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1.4k
views
1
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No split frequencies were shown in terminal when Mrbayes were set as " 1 runs and 8 chains"
mrbayes phylogenetic terminal split frequencies written 5.9 years ago by Ginsea Chen • 130 • updated 5.9 years ago by Brice Sarver • 3.5k
5
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3
answers
3.2k
views
3
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VCF + Phylogenetic tree : how to calculate the distance between two set of samples
vcf phylogenetic tree distance written 5.8 years ago by Pierre Lindenbaum ♦ 130k • updated 5.8 years ago by Jeremy Leipzig ♦ 19k
4
votes
3
answers
2.6k
views
3
answers
Looking for an aligned multi-FASTA file in order to practice building phylogenetic tree
phylogenetic written 5.8 years ago by l.roca • 10 • updated 5.8 years ago by Brice Sarver • 3.5k
2
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1
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3.4k
views
1
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dist.dna, dist.ml and phylogenetic tree
phylogenetic written 5.8 years ago by l.roca • 10 • updated 5.8 years ago by Brice Sarver • 3.5k
0
votes
0
answers
1.6k
views
0
answers
Genomic data (DNA-Seq, Exome, RNA-Seq, ...) to infer metastasis phylogenetic tree
phylogenetic forum metastasis written 5.5 years ago by Nicolas Rosewick ♦ 9.0k • updated 5.5 years ago by Sean Davis ♦ 26k
2
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3
answers
3.5k
views
3
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Make fasta file from SNPs in two vcf files
vcf fasta forum snp phylogenetic written 5.4 years ago by sun.nation • 120 • updated 5.3 years ago by bastianxpfeifer • 50
3
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1
answer
1.7k
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1
answer
software advise: visualise the phylogenetic tree that uses bubbles on the branches to indicate abundance.
advise xml tree phylogenetic abundance written 5.2 years ago by cara78 • 10 • updated 5.2 years ago by jhc • 2.9k
0
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1
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1.2k
views
1
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phylogenetic analysis: 2.5 millions SNPs in 33 samples?
phylogenetic snp written 5.1 years ago by sun.nation • 120 • updated 5.1 years ago by SNPsaurus • 50
0
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1
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1.0k
views
1
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mitochondrial phylogenetic analysis with PCG
phylogenetic pcg written 5.0 years ago by bondcarbond • 0 • updated 5.0 years ago by h.mon ♦ 31k
0
votes
1
answer
869
views
1
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Downsides of using RAxML
phylogenetic written 5.0 years ago by daoro17 • 0 • updated 5.0 years ago by h.mon ♦ 31k
0
votes
1
answer
903
views
1
answer
The name of my gene doesn't match it's position in my phylogenetic tree ? A misnamed orthologue?
gene phylogenetic orthologue blast written 4.8 years ago by fergiekeno • 0
4
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2
answers
1.4k
views
2
answers
Prune Trees To Overlapping Taxa
phylogenetic prunning tree written 4.6 years ago by rezam • 20 • updated 4.6 years ago by jhc • 2.9k
0
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0
answers
1.4k
views
0
answers
Low Bootstrap value
phylogenetic sequence alignment bootstrap spacer written 4.2 years ago by Cirus • 0
1
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0
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1.5k
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0
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SNPhylo Error Help: there is no SNP and Na/NaN arguement
phylogenetic vcf snphylo tree written 4.1 years ago by N Smith • 10 • updated 4.0 years ago by Biostar ♦♦ 20
1
vote
1
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1.4k
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1
answer
General phylogenetic tree package
phylogenetic python tree R written 4.1 years ago by shai2go • 0 • updated 4.1 years ago by Jean-Karim Heriche ♦ 23k
9
votes
3
answers
1.4k
views
5 follow
3
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Why don't phylogenetic analyses using DNA sequences and protein sequences result in identical trees?
phylogenetic sequence sequencing written 3.8 years ago by mafrah18 • 20 • updated 3.0 years ago by Biostar ♦♦ 20
2
votes
1
answer
1.3k
views
1
answer
Phylogenetic analysis and Substitution rate calculation
substitution phylogenetic dnds kaks written 3.8 years ago by SJ Basu • 30 • updated 3.8 years ago by Joseph Hughes • 2.8k
7
votes
1
answer
2.0k
views
5 follow
1
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Choosing specific candidate genes for phylogenetic tree construction
phylogenetic mvlst virulence factors sequencing written 3.7 years ago by Penny Liu • 30 • updated 3.7 years ago by kloetzl • 1.1k
0
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0
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1.0k
views
0
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PAML sample sizes within multiple alignment format
software phylogenetic paml baseml likelihood written 3.6 years ago by enrightnm • 0
0
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0
answers
1.0k
views
0
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Creating basic phylogenetic trees of human haplotype in R
phylogenetic R haplotype written 3.4 years ago by Floris Brenk • 950
0
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0
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679
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0
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How can I export multiple trees (in different phyloxml files) to different pdf files?
pdf phylogenetic tree phyloxml written 3.1 years ago by HBBA • 0 • updated 2.9 years ago by Biostar ♦♦ 20
1
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0
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624
views
0
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CodeML 4.9e "strange: f[132] = -0.889877 very small" messages
phylogenetic paml codeml written 2.8 years ago by Hugo • 290
2
votes
1
answer
4.6k
views
1
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From a vcf SNP file to a phylogenetic tree
vcf phylogenetic snp written 2.5 years ago by Picasa • 540 • updated 2.5 years ago by leeandroid • 90
5
votes
1
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2.5k
views
1
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How does ggtree interprets branch support value (e.g bootstrap value) given as node label?
phylogenetic R ggtree newick written 2.2 years ago by Chirag Parsania • 1.9k • updated 2.2 years ago by zx8754 ♦ 9.6k
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