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Maximum Parsimony (and the Median Problem) VS Maximum Likelihood for phylogenies construction
phylogenetics discussion research written 2 days ago by Lucas Peres • 50
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68
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combining phylogenetic trees into a consensus super Tree
phylogenetics tree written 11 days ago by Moses • 60
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630
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Job: Bioinformatician position at the Centre for Virus Research - Glasgow, UK
phylogenetics evolution hiv outbreak job written 20 days ago by Joseph Hughes • 2.7k
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54
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DNA Ancestral State Reconstruction in Phangorn (or similiar)
phangorn R phylogenetics ancestral state trees written 20 days ago by jnf3769 • 40
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76
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Using and Understanding PAML for positive selection
gene phylogenetics paml ete selection written 26 days ago by lokdeep17 • 0
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64
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python equivalent for reorder.dendrogram() R function
python3 dendogram phylogenetics written 5 weeks ago by Moses • 60
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95
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Rooting phylogenetic trees
python3 phylogenetics tree rooting written 5 weeks ago by Moses • 60
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119
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Removing a node from a phylogenetic tree with its edges
python3 phylogenetics ete3 written 5 weeks ago by Moses • 60
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99
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How to build a phylogenetic tree (breast cancer samples)
phylogenetic phylogenetics tree written 6 weeks ago by Pin.Bioinf • 240
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156
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1
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Phylonet -a taxa map parameter
phylonet bioinformatics phylogenetics written 7 weeks ago by acj1n18 • 0
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124
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Is there a measure for degree of reticulation in a phylogenetic network?
phylogenetic network phylogenetics evolution written 7 weeks ago by Namenlos • 0
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96
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ETE3 TreeError: 'Nodes are not connected!': how to fix?
nodes phylogenetics phylome treeerror ete written 8 weeks ago by Macspider • 2.8k
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175
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Appropriateness of using topology constraints to enforce species tree concordant phylogeny
phylogenetics evolution iq-tree written 9 weeks ago by mahakaran.s.sandhu • 0
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1
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207
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Parsimony score of a NJ tree
phylogenetics written 3 months ago by mdsiddra • 20 • updated 3 months ago by grant.hovhannisyan • 1.4k
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142
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Hierarchy order of tree branches using Biopython
phylogenetics biopython written 3 months ago by mdsiddra • 20
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1
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314
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1
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Coloring nodes by tip label attribute in figtree
annotation phylogenetics figtree written 4 months ago by StarCute • 110 • updated 3 months ago by karthic • 100
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853
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MrBayes Log likelihood stuck on a single value
mrbayes phylogenetics beagle written 2.1 years ago by Whetting • 1.5k • updated 4 months ago by uzmaabdulsalam • 0
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4
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7 follow
4
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Closest Related Bacterial Species
genome phylogenetics taxonomy written 7.4 years ago by Greg • 50 • updated 4 months ago by Biostar ♦♦ 20
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1
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227
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Reconstruction of a generic tree using dynamic data with python
python phylogenetics written 4 months ago by mdsiddra • 20 • updated 4 months ago by Brice Sarver • 2.5k
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297
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How to create a dendrogram of clusters and reconstruct phylogenetic relationship
R phylogenetics clustering alignment written 4 months ago by deolg • 0
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352
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Why is Neighbor Joining method better than UPGMA for phylogenetic tree reconstruction from protein sequences?
assembly upgma phylogenetics alignment written 4 months ago by O.rka • 80
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6 follow
5
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Verifying Phylogeny Trees
phylogenetics tree written 8.3 years ago by Jamand • 110 • updated 4 months ago by Biostar ♦♦ 20
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177
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measure of residue dissimilarity in aligment (Phylogenetic discriminant)
alignment phylogenetics sequence written 5 months ago by michau • 10
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1
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224
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1
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taxa names in phylogenetic tree
perl phylogenetics newick shell written 5 months ago by erick_rc93 • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 117k
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807
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1
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Phylogeny from incomplete orthogroups
phylogenetics orthogroups orthomcl rna-seq written 2.3 years ago by shelkmike • 130 • updated 5 months ago by Biostar ♦♦ 20
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217
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Algorithm for initial tree topology for Parsimony tree
phylogenetics written 6 months ago by mdsiddra • 20
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379
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Job: Postdoctoral position in evolutionary bioinformatics in Switzerland
postdoc phylogenetics job phylogenomics written 6 months ago by Christophe Dessimoz • 540
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3
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3.1k
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7 follow
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Phylip App'S Without Emboss Tool
python phylogenetics biopython written 8.8 years ago by Thaman • 3.2k • updated 6 months ago by RamRS ♦ 20k
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996
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Difference between ape::root, ggtree::reroot and phytools::reroot in R
R phylogenetics phytools ggtree ape written 7 months ago by Michael • 20
3
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372
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SNP matrix to a nice phylogenetic tree
R phylogenetics snp written 7 months ago by roy.granit • 780
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