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<prev • 332 results • page 1 of 12 • next >
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Appropriateness of using topology constraints to enforce species tree concordant phylogeny
phylogenetics evolution iq-tree written 7 days ago by mahakaran.s.sandhu • 0
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154
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Parsimony score of a NJ tree
phylogenetics written 7 weeks ago by mdsiddra • 20 • updated 7 weeks ago by grant.hovhannisyan • 1.4k
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Hierarchy order of tree branches using Biopython
phylogenetics biopython written 7 weeks ago by mdsiddra • 20
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192
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Coloring nodes by tip label attribute in figtree
annotation phylogenetics figtree written 8 weeks ago by StarCute • 110 • updated 8 weeks ago by karthic • 100
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789
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MrBayes Log likelihood stuck on a single value
mrbayes phylogenetics beagle written 24 months ago by Whetting • 1.5k • updated 8 weeks ago by uzmaabdulsalam • 0
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7 follow
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Closest Related Bacterial Species
genome phylogenetics taxonomy written 7.3 years ago by Greg • 50 • updated 10 weeks ago by Biostar ♦♦ 20
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186
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Reconstruction of a generic tree using dynamic data with python
python phylogenetics written 11 weeks ago by mdsiddra • 20 • updated 11 weeks ago by Brice Sarver • 2.5k
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How to create a dendrogram of clusters and reconstruct phylogenetic relationship
R phylogenetics clustering alignment written 11 weeks ago by deolg • 0
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Why is Neighbor Joining method better than UPGMA for phylogenetic tree reconstruction from protein sequences?
assembly upgma phylogenetics alignment written 12 weeks ago by O.rka • 70
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6 follow
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Verifying Phylogeny Trees
phylogenetics tree written 8.1 years ago by Jamand • 110 • updated 12 weeks ago by Biostar ♦♦ 20
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152
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measure of residue dissimilarity in aligment (Phylogenetic discriminant)
alignment phylogenetics sequence written 3 months ago by michau • 10
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165
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taxa names in phylogenetic tree
perl phylogenetics newick shell written 3 months ago by erick_rc93 • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 116k
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Phylogeny from incomplete orthogroups
phylogenetics orthogroups orthomcl rna-seq written 2.2 years ago by shelkmike • 70 • updated 3 months ago by Biostar ♦♦ 20
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176
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Algorithm for initial tree topology for Parsimony tree
phylogenetics written 4 months ago by mdsiddra • 20
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332
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Job: Postdoctoral position in evolutionary bioinformatics in Switzerland
postdoc phylogenetics job phylogenomics written 4 months ago by Christophe Dessimoz • 510
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7 follow
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Phylip App'S Without Emboss Tool
python phylogenetics biopython written 8.6 years ago by Thaman • 3.2k • updated 4 months ago by RamRS ♦ 20k
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691
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Difference between ape::root, ggtree::reroot and phytools::reroot in R
R phylogenetics phytools ggtree ape written 5 months ago by Michael • 20
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244
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SNP matrix to a nice phylogenetic tree
R phylogenetics snp written 5 months ago by roy.granit • 750
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137
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Statistically defining deep branching clades in phylogenetic tree
phylogenetics trees written 5 months ago by Daniel • 3.7k
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181
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Minimum mutation count for each alignment site over a given tree
phylogenetics written 7 months ago by painlessprose • 10 • updated 5 months ago by Biostar ♦♦ 20
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193
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WAG matrix implementation
python phylogenetics written 5 months ago by mdsiddra • 20
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169
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Calculating tree diameter
alignment phylogenetics tree graph theory written 6 months ago by jrj.healey ♦ 9.6k
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283
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How do I calculate the branch lengths
python phylogenetics written 6 months ago by mdsiddra • 20
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268
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Forum: Are there any open phylogenetic projects that don't require coding to make a contribution.
forum phylogenetics evolution molecular evolution written 6 months ago by cv.napping • 20
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442
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Identifying mutations between haplotypes using haploNet (pegas) in R
haplotypes R pegas phylogenetics written 9 months ago by GabrielMontenegro • 440 • updated 6 months ago by Jie Ping • 20
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515
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RAxML multi-threading option in HPC cluster
phylogenetics raxml written 7 months ago by MAPK • 1.3k
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603
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How to tell the best model for ML analysis using RaxML?
phylogenetics raxml modeltest written 7 months ago by MAPK • 1.3k • updated 7 months ago by Michael Dondrup ♦ 45k
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312
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Strategies for identifying as many homologs as possible
homology phylogenetics est msa blast written 7 months ago by michael • 0 • updated 7 months ago by Michael Dondrup ♦ 45k
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268
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Generate all NNI-neighbours of a tree
nni phylogenetics tree newick written 7 months ago by phylomat • 0
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Phylogenetic analysis for large size fasta sequences
phylogenetics written 7 months ago by MAPK • 1.3k • updated 7 months ago by h.mon ♦ 22k
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