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<prev • 323 results • page 1 of 11 • next >
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Algorithm for initial tree topology for Parsimony tree
phylogenetics written 5 days ago by mdsiddra • 10
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Job: Postdoctoral position in evolutionary bioinformatics in Switzerland
postdoc phylogenetics job phylogenomics written 9 days ago by Christophe Dessimoz • 470
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7 follow
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Phylip App'S Without Emboss Tool
python phylogenetics biopython written 8.3 years ago by Thaman • 3.2k • updated 12 days ago by Ram ♦ 17k
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308
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Difference between ape::root, ggtree::reroot and phytools::reroot in R
R phylogenetics phytools ggtree ape written 6 weeks ago by Michael • 10
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124
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SNP matrix to a nice phylogenetic tree
R phylogenetics snp written 6 weeks ago by roy.granit • 740
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Statistically defining deep branching clades in phylogenetic tree
phylogenetics trees written 6 weeks ago by Daniel • 3.6k
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124
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Minimum mutation count for each alignment site over a given tree
phylogenetics written 4 months ago by painlessprose • 10 • updated 8 weeks ago by Biostar ♦♦ 20
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107
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WAG matrix implementation
python phylogenetics written 8 weeks ago by mdsiddra • 10
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102
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1
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Calculating tree diameter
alignment phylogenetics tree graph theory written 10 weeks ago by jrj.healey ♦ 6.8k
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123
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How do I calculate the branch lengths
python phylogenetics written 11 weeks ago by mdsiddra • 10
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Forum: Are there any open phylogenetic projects that don't require coding to make a contribution.
forum phylogenetics evolution molecular evolution written 11 weeks ago by cv.napping • 20
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Identifying mutations between haplotypes using haploNet (pegas) in R
haplotypes R pegas phylogenetics written 6 months ago by GabrielMontenegro • 410 • updated 12 weeks ago by Jie Ping • 20
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RAxML multi-threading option in HPC cluster
phylogenetics raxml written 3 months ago by MAPK • 1.3k
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275
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How to tell the best model for ML analysis using RaxML?
phylogenetics raxml modeltest written 3 months ago by MAPK • 1.3k • updated 3 months ago by Michael Dondrup ♦ 44k
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Strategies for identifying as many homologs as possible
homology phylogenetics est msa blast written 3 months ago by michael • 0 • updated 3 months ago by Michael Dondrup ♦ 44k
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179
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Generate all NNI-neighbours of a tree
nni phylogenetics tree newick written 3 months ago by phylomat • 0
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1
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Phylogenetic analysis for large size fasta sequences
phylogenetics written 3 months ago by MAPK • 1.3k • updated 3 months ago by h.mon ♦ 19k
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2
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Collapsing poorly supported nodes into polytomies in R - using 'Phangorn' and 'ape'
polytomies R phylogenetics phangorn ape written 4.0 years ago by confusedious • 400 • updated 4 months ago by emre.cto • 0
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Job: Computational Postdoc | AndersenLab @ Scripps La Jolla
viruses phylogenetics job sequencing written 4 months ago by kga1978 • 80
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257
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5 follow
1
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Is there gold standard data for ancestral reconstruction?
gene evolution phylogenetics protein written 5 months ago by chahat_u • 50 • updated 4 months ago by Jean-Karim Heriche ♦ 16k
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158
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ETE3 compare stop filename truncation
congruency phylogenetics comparison trees written 5 months ago by jrj.healey ♦ 6.8k
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Phylogenetic Tree Comparison
similarity phylogenetics graphs written 6.7 years ago by Mehdi • 10 • updated 6 months ago by Biostar ♦♦ 20
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3
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Constructing Phylogenetic Tree Based On Pathogenicity Genes Of A Fungus
phylogeny domain phylogenetics genbank genome written 5.6 years ago by Natasya Azwin • 10 • updated 6 months ago by Biostar ♦♦ 20
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Correspondence between unlabeled/different tips of different phylogenetic trees
gene phylogenetics sequence trees written 6 months ago by rfm • 0
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357
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Job: Cluster hire for new U19 Center for Systems Biology
systems biology R phylogenetics job python written 6 months ago by kga1978 • 80
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26 follow
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Phylogenetic Analysis Of Whole Genomes
phylogenetics tree written 8.2 years ago by Aparna • 120 • updated 7 months ago by Eli Korvigo • 120
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if you were making evolutionary trees how would you make sure they were accurate and not based on convergent evolution?
evolution phylogenetics convergent evolution tree written 21 months ago by nhilaski • 0 • updated 7 months ago by Biostar ♦♦ 20
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6 follow
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Mafft Output Distance Matrix
phylogenetics alignment distance written 7.5 years ago by Gabriel Mitchell • 520 • updated 7 months ago by Ghoti • 40
2
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1
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352
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1
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Neighbor Joining algorithm: why n-2?
neighbor-joining phylogenetics evolution written 7 months ago by michael • 0 • updated 7 months ago by kloetzl • 960
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How to root a tree in R with a polytomy at the root
R phylogenetics written 8 months ago by hyanwong • 60
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