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14
votes
4
answers
2.6k
views
10 follow
4
answers
Forum: Entering Into Bioinformatics Domain
forum phylogenetics protein written 8.3 years ago by Hariharan • 200 • updated 6 days ago by RamRS ♦ 26k
2
votes
1
answer
136
views
1
answer
Error while reading mlc file from CODEML into ggtree/treeio in R
software error R phylogenetics treeio ggtree written 11 days ago by astronautmike02 • 0 • updated 10 days ago by zx8754 ♦ 9.1k
0
votes
0
answers
90
views
0
answers
Identifying signature genomic regions
comparative genomics phylogenetics genomics written 7 weeks ago by Tbr • 0 • updated 13 days ago by Biostar ♦♦ 20
0
votes
0
answers
59
views
0
answers
plot phylogenetic tree with two traits at the tips
phylogenetics written 4 weeks ago by phylofun • 50
0
votes
0
answers
62
views
0
answers
Raxml/Gubbins Max Likelihood Tree branch units problem
genome phylogenetics snp written 5 weeks ago by earlsm • 0
4
votes
1
answer
133
views
1
answer
Biopython gives ValueError: Sequences must all be the same length even though sequences are of the same length
phylogenetics biopython written 6 weeks ago by KHP • 0 • updated 6 weeks ago by a.zielezinski ♦ 9.1k
0
votes
0
answers
73
views
0
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Conducting an efficient parsimony analysis for over 600 taxa (SNP data) in PAUP
paup phylogenetics systematics snp written 7 weeks ago by josc • 0
0
votes
1
answer
148
views
1
answer
Problem with upload data for Mega
phylogenetics format mega tree written 9 weeks ago by pehenriquejp • 0
3
votes
1
answer
122
views
1
answer
Is it possible to specify CPU/thread in raxmlHPC?
gene raxml phylogenetics genetics evolution written 12 weeks ago by Dineshkumar K • 30 • updated 12 weeks ago by genomax ♦ 80k
5
votes
1
answer
240
views
1
answer
Phylogenetic tree for very large numbers of bacterial assemblies
assembly phylogenetics snp alignment written 3 months ago by yairgatt • 10 • updated 3 months ago by Mensur Dlakic • 4.3k
1
vote
0
answers
155
views
0
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Can phylogenetic tree infer temporal order?
phylogenetics migration history written 4 months ago by Ruby • 10
5
votes
1
answer
1.5k
views
1
answer
Efficient Programme To Construct Trees With A Given Fixed Topology
software phylogenetics tree written 7.5 years ago by Biojl • 1.7k • updated 4 months ago by Biostar ♦♦ 20
12
votes
4
answers
4.0k
views
5 follow
4
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Phylogenetic Tree Of Sequenced Eukaryotes
phylogenetics tree written 8.7 years ago by Lyco • 2.3k • updated 4 months ago by Biostar ♦♦ 20
6
votes
2
answers
228
views
2
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calculating confidence intervals of boostrapped trees
phylogenetics bootstrapping trees written 5 months ago by Moses • 120
5
votes
4
answers
22k
views
4
answers
Phylogenetic Tree Read And Interprettion
phylogenetics written 8.0 years ago by Oumed • 30 • updated 5 months ago by zx8754 ♦ 9.1k
2
votes
0
answers
189
views
0
answers
Advice on 16S Alignment for genus-specific qPCR design?
16s phylogenetics qpcr written 5 months ago by Tbr • 0
1
vote
0
answers
1.4k
views
0
answers
News: CAFE v4.0 available
cafe news phylogenetics written 3.0 years ago by Ben Fulton • 110 • updated 6 months ago by 2018110660 • 0
0
votes
1
answer
229
views
1
answer
compute distance to root of phylogenetic tree
phylogenetics microbiology written 6 months ago by bioguy • 40 • updated 6 months ago by Kevin Blighe ♦ 56k
4
votes
2
answers
1.5k
views
5 follow
2
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Comparative Genomics - Make phylogenetic tree of species with available NCBI genomes
genome ncbi phylogenetics comparative written 3.4 years ago by dacotahm • 20 • updated 6 months ago by Juke-34 • 3.7k
1
vote
0
answers
181
views
0
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MrBayes: placing a new branch on an existing tree
mrbayes phylogenetics written 6 months ago by DNAlias • 0
11
votes
2
answers
4.6k
views
2
answers
Converting Phylogenetic Tree Into A Binary One - R Ape Package
R phylogenetics written 8.8 years ago by Agatha • 340 • updated 6 months ago by Biostar ♦♦ 20
1
vote
0
answers
534
views
0
answers
R ape: find the branch length of a particular tip label
R phylogenetics ape written 7 months ago by alissamariewilliams2015 • 0
0
votes
1
answer
472
views
1
answer
changing species names in phylogeny in R
R phylogenetics written 7 months ago by phylofun • 50 • updated 7 months ago by Brice Sarver • 3.5k
0
votes
0
answers
178
views
0
answers
How do I evaluate a hypothesized correlation between the number of chromosomes and a phenotypic character?
phylogenetics correlation chromosome written 7 months ago by Namenlos • 0
1
vote
1
answer
690
views
1
answer
How do I annotate a tree with boostrap scores and color code clades in ggtree?
R phylogenetics bootstrap ggtree written 8 months ago by Namenlos • 0 • updated 8 months ago by Guangchuang Yu • 2.3k
0
votes
0
answers
259
views
0
answers
Job: PhD Position in Statistical Phylogenetics (Modeling Species Diversification)
modeling phylogenetics bayesian statistics job written 8 months ago by phylomatics • 10
0
votes
0
answers
387
views
0
answers
Job: PhD Position in Statistical Phylogenetics (Species Tree Estimation)
modeling phylogenetics bayesian statistics job written 8 months ago by phylomatics • 10
0
votes
1
answer
632
views
1
answer
Best way to visualize large phylogenetic trees
phylogenetics visualization written 8 months ago by hakon.kaspersen • 0 • updated 8 months ago by Mensur Dlakic • 4.3k
0
votes
1
answer
339
views
1
answer
Phylogenetics:How to Generate a binary newick tree from a list of species
ete3 phylogenetics phylot python written 10 months ago by View7 • 0 • updated 9 months ago by jhc • 2.8k
1
vote
0
answers
228
views
0
answers
Testing Distances in Phylogenetic Trees
phylogenetics methylation written 9 months ago by ResearchR • 70
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