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Removing samples from phyloseq otu_table
R phyloseq written 9 weeks ago by zrf10 • updated 9 weeks ago by antonioggsousa1.5k
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How to extract out specific distances from a distance matrix?
wgs phyloseq written 3 months ago by dpc150 • updated 3 months ago by antonioggsousa1.5k
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How to extract to columns from a phyloseq sample_data object?
phyloseq written 3 months ago by dpc150 • updated 3 months ago by antonioggsousa1.5k
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METAPHLAN: Relative abundance to read count
metaphlan phyloseq written 3 months ago by dpc150 • updated 3 months ago by antonioggsousa1.5k
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Import metaphlan output to phyloseq
wgs metaphlan metagenome phyloseq written 3 months ago by dpc150 • updated 3 months ago by RamRS30k
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stacked barplot color choice
R metagenomics 16s phyloseq written 3 months ago by dpc150 • updated 3 months ago by antonioggsousa1.5k
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mothur output visualisation with Phyloseq: unable to order the x-axis
R 16s mothur phyloseq written 4 months ago by dpc150 • updated 4 months ago by Asaf8.4k
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ERROR:Error in x[seq_len(n)] : object of type 'S4' is not subsettable
page mothur phyloseq 16s rrna heatmap written 4 months ago by dpc150 • updated 4 months ago by Joe18k
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PCoA plot with phyla abundance
vegan R phyloseq written 7 months ago by Bioinfonext250
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6 follow
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Removing unassigned OTUs
phyloseq R next-gen otu microbiome written 2.3 years ago by rahulgenexpress10 • updated 2.3 years ago by zx87549.7k
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Phyloseq Weighted Unifrac Ordination Error
unifrac phyloseq pcoa ordination ape written 2.8 years ago by mzmd40 • updated 2.7 years ago by Kevin Blighe66k
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Plots in R using phyloseq
R phyloseq written 2.8 years ago by arunsaikirans0
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Names are not identical in mapping file and the otu file.
R phyloseq qiime written 2.9 years ago by arunsaikirans0 • updated 2.9 years ago by Hussain Ather940
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Anyone with experience in Phyloseq in R?
R phyloseq qiime written 4.3 years ago by espop2360 • updated 3.4 years ago by Bioinformatics_NewComer320
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Convert mothur classify.seqs output to BIOM format
R metagenomics mothur phyloseq written 3.5 years ago by pkozyrev10 • updated 3.5 years ago by h.mon31k
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