Showing: pileupreset
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samtools mpileup keeps making an empty file
samtools pileup written 10 months ago by James Reeve90 • updated 10 months ago by gab20
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Pileup To Vcf Format
vcf pileup written 8.6 years ago by Pri20 • updated 12 months ago by Mbillah110
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Samtools 1.3 mpileup result < >
next-gen samtools rna-seq pileup sequencing written 3.7 years ago by yanweng30 • updated 14 months ago by RamRS24k
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Mapping Reads Back To Assembly Contigs To Generate Pileup
pileup bwa coverage written 7.6 years ago by Sen0 • updated 14 months ago by Biostar ♦♦ 20
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pileup vs. IGV insertion locations
pileup igv written 19 months ago by blur110
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Finding SNPs in population data: help with pipeline
genome population snp pileup written 2.6 years ago by Alex0 • updated 23 months ago by Pierre Lindenbaum124k
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Samtools Mpileup And Overlapping Paired-End Reads
paired-end pileup rna-seq written 6.0 years ago by alpha2zee100 • updated 24 months ago by Owen S.350
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Pysam read reference positions and sequence do not match
samtools pysam pileup tview written 2.1 years ago by rlorigro0 • updated 2.0 years ago by Biostar ♦♦ 20
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Nucleotide coverage if >5 reads
alignment sequence pileup written 2.1 years ago by Vca805530 • updated 2.1 years ago by Pierre Lindenbaum124k
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Samtools mpileup output: missing fields?
rnaseq samtools pileup mpileup written 2.2 years ago by cjaln0 • updated 2.2 years ago by John Marshall1.8k
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pileup format: what's the difference between upper and lower case?
samtools pileup written 2.5 years ago by blur110 • updated 2.5 years ago by Devon Ryan92k
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What does "pileup" mean in the context of MACS2 peak caller?
macs2 chip-seq pileup written 2.6 years ago by ariel.balter140 • updated 2.6 years ago by Santosh Anand5.0k
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filtering pileup file with samtools for SomaticSniper
somaticsniper samtools snp pileup written 4.1 years ago by TriS4.0k • updated 3.0 years ago by guangxujin0
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Pileup format parsing difficulty
samtools pileup written 3.1 years ago by maheetha.b70 • updated 3.1 years ago by John Marshall1.8k
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(samtools) Filtering and interpreting >100 QUAL scores
vcf phred-scaled qual samtools pileup written 3.8 years ago by umn_bist330 • updated 3.8 years ago by Brice Sarver3.2k
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understanding pysam pileup()
pysam pileup written 3.9 years ago by geek_y10.0k
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How To Pile Up Multiple Bed Files Into 1 File
bed intersect sam bam pileup written 7.5 years ago by Hanfei Sun60 • updated 4.1 years ago by Biostar ♦♦ 20
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Masked Or Unmasked Dna Reference For Sam2Vcf.Pl
vcf samtools pileup written 8.5 years ago by Pi510 • updated 4.2 years ago by Biostar ♦♦ 20
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