Showing: pileupreset
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samtools mpileup keeps making an empty file
samtools pileup written 5 months ago by James Reeve80 • updated 5 months ago by gab20
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5 follow
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Pileup To Vcf Format
vcf pileup written 8.2 years ago by Pri20 • updated 7 months ago by Mbillah110
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5 follow
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Samtools 1.3 mpileup result < >
next-gen samtools rna-seq pileup sequencing written 3.4 years ago by yanweng30 • updated 9 months ago by RamRS22k
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Mapping Reads Back To Assembly Contigs To Generate Pileup
pileup bwa coverage written 7.2 years ago by Sen0 • updated 9 months ago by Biostar ♦♦ 20
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pileup vs. IGV insertion locations
pileup igv written 14 months ago by blur110
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Finding SNPs in population data: help with pipeline
genome population snp pileup written 2.2 years ago by Alex0 • updated 19 months ago by Pierre Lindenbaum121k
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7 follow
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Samtools Mpileup And Overlapping Paired-End Reads
paired-end pileup rna-seq written 5.6 years ago by alpha2zee100 • updated 19 months ago by Owen S.350
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Pysam read reference positions and sequence do not match
samtools pysam pileup tview written 20 months ago by rlorigro0 • updated 20 months ago by Biostar ♦♦ 20
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Nucleotide coverage if >5 reads
alignment sequence pileup written 20 months ago by Vca805530 • updated 20 months ago by Pierre Lindenbaum121k
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4
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Samtools mpileup output: missing fields?
rnaseq samtools pileup mpileup written 21 months ago by cjaln0 • updated 21 months ago by John Marshall1.6k
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pileup format: what's the difference between upper and lower case?
samtools pileup written 2.1 years ago by blur110 • updated 2.1 years ago by Devon Ryan90k
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What does "pileup" mean in the context of MACS2 peak caller?
macs2 chip-seq pileup written 2.2 years ago by ariel.balter140 • updated 2.2 years ago by Santosh Anand4.8k
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filtering pileup file with samtools for SomaticSniper
somaticsniper samtools snp pileup written 3.7 years ago by TriS3.8k • updated 2.6 years ago by guangxujin0
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883
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Pileup format parsing difficulty
samtools pileup written 2.7 years ago by maheetha.b60 • updated 2.7 years ago by John Marshall1.6k
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(samtools) Filtering and interpreting >100 QUAL scores
vcf phred-scaled qual samtools pileup written 3.4 years ago by umn_bist320 • updated 3.4 years ago by Brice Sarver2.6k
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understanding pysam pileup()
pysam pileup written 3.5 years ago by geek_y9.7k
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How To Pile Up Multiple Bed Files Into 1 File
bed intersect sam bam pileup written 7.1 years ago by Hanfei Sun60 • updated 3.7 years ago by Biostar ♦♦ 20
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Masked Or Unmasked Dna Reference For Sam2Vcf.Pl
vcf samtools pileup written 8.1 years ago by Pi510 • updated 3.8 years ago by Biostar ♦♦ 20
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meaning of new symbols in samtools mpileup format?
samtools snp pileup htslib written 4.8 years ago by Dejian1.3k • updated 4.8 years ago by Devon Ryan90k
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