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4
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1
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59
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5 follow
1
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How to parallelize a rule in Snakemake ?
ngs pipeline snakemake rna-seq written 14 hours ago by darbinator • 40
0
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1
answer
97
views
1
answer
TCGA DNA methylation data pipeline
dna methylation tcga pipeline written 9 days ago by yuabrahamliu • 40 • updated 8 days ago by Charles Warden ♦ 6.1k
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0
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83
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0
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News: SNAKEMAKE course in Berlin. Last 3 places
python news pipeline written 4 weeks ago by carlopecoraro2 • 840
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0
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140
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0
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How to run Snakemake pipeline from .py file instead of .smk file.
python pipeline snakemake written 4 weeks ago by Artem Kiselev • 20
3
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0
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197
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6 follow
0
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RNA-Seq Differential Expression Bash Scripting Error
pipeline samtools bash scripting rna-seq hisat2 written 6 weeks ago by timothyfisher101 • 0 • updated 6 weeks ago by ATpoint ♦ 13k
1
vote
1
answer
118
views
1
answer
How to find true mutations in tumor by removing the background from matched sample?
normalization exome-seq R snp pipeline written 8 weeks ago by dodausp • 110 • updated 8 weeks ago by bernatgel • 1.7k
6
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2
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194
views
2
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Bash vs WDL for running GATK
gatk cromwell pipeline linux wdl written 11 weeks ago by Mehulsharma.253 • 10 • updated 10 weeks ago by vdauwera • 890
8
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0
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680
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6 follow
0
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workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
pipeline language written 3 months ago by Bogdan • 700 • updated 3 months ago by WouterDeCoster ♦ 36k
0
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1
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196
views
1
answer
SplitsTree command line mode
phylogeny command line splitstree pipeline network written 3 months ago by Macspider • 2.7k
0
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1
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231
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1
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Error: Snakemake skiped a rule
snakefile snps pipeline snakemake indels written 4 months ago by c.clarido • 40 • updated 4 months ago by rizoic • 190
18
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1
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2.2k
views
1
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Tutorial: Use a workflow management tool to manage your computational pipelines
workflow management tutorial pipeline written 2.3 years ago by Eric Lim • 1.2k • updated 4 months ago by alaincoletta • 110
1
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0
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329
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0
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Job: BIOINFORMATICS ENGINEER Position - TwinStrand Bioscience, Seattle, WA, USA
pipeline next-gen cloud job sequencing written 4 months ago by Careers • 10 • updated 4 months ago by genomax ♦ 62k
1
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1
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314
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1
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How to use Snakemake with tools which don't have clearly defined output options for files?
next-gen pipeline snakemake sequencing written 5 months ago by Artem Kiselev • 20 • updated 5 months ago by WouterDeCoster ♦ 36k
0
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0
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252
views
0
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CWL Error Empty Scatter
cwl workflow pipeline scatter written 5 months ago by HL • 0
4
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1
answer
533
views
1
answer
Easier Method to Make a Bioinformatics Pipeline Available on the Web
ui bioinformatics web pipeline written 6 months ago by skim • 30
20
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4
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5.9k
views
10 follow
4
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Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
ncbi taxonomy pipeline tool blast written 7.1 years ago by Daniel • 3.7k • updated 6 months ago by gtrwst9 • 0
0
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0
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412
views
0
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Job: Senior Bioinformatics Scientist
pipeline chip-seq job ngs rna-seq wgs written 6 months ago by amit • 0
179
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20
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23k
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66 follow
20
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How To Organize A Pipeline Of Small Scripts Together?
pipeline general written 9.0 years ago by Giovanni M Dall'Olio ♦ 26k • updated 7 months ago by Biostar ♦♦ 20
3
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0
answers
309
views
0
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Tool: SL-quant: finding splice-leader (SL) trans-splicing events in RNA-seq reads.
trans-splicing nematode tool rna-seq pipeline written 7 months ago by Carlo Yague • 4.4k
0
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1
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664
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1
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Error with snakemake
python pipeline snakemake salmon written 8 months ago by Biologist • 130 • updated 8 months ago by WouterDeCoster ♦ 36k
4
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2
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550
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2
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What is the best pipeline step to merge replicates?
pipeline sequencing written 8 months ago by phosphodiester_bond • 20 • updated 8 months ago by Friederike ♦ 2.5k
0
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0
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365
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0
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Variant analysis on 1 or 2 samples: are the final steps of the GATK pipeline unneccessary?
gatk pipeline snp variant analysis written 8 months ago by YaGalbi • 1.4k
7
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4
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2.3k
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4
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What is the most popular and best tools/pipeline for small RNA seq analysis?
small rna seq pipeline written 2.6 years ago by FAST_GENOME • 50 • updated 9 months ago by accfree • 0
4
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0
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692
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0
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Tool: SPAR: Web server and scripts for small RNA, short total RNA, miRNA-seq and single-cell small RNA sequencing data processing, analysis, and comparison with DASHR and ENCODE >180 tissues/cell types
web server pipeline tool small rnas encode rna-seq written 9 months ago by pkuksa • 40
13
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3
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1.4k
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7 follow
3
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NGS analysis: how to handle paired-end reads
ngs paired-end reads pipeline analysis written 9 months ago by m93 • 140 • updated 9 months ago by manuel.belmadani • 460
0
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0
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201
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0
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A question about modular pipeline for transcriptome
pipeline transcriptome written 10 months ago by leboralli • 0
4
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0
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382
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0
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Workflow for Releasing HPC Pipeline via Docker
deployment ngs pipeline docker hpc written 10 months ago by aostern • 30
0
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0
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284
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0
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Can I run the EBI metagenomics pipeline locally?
ebi metagenomics pipeline written 10 months ago by alesssia • 510 • updated 10 months ago by h.mon ♦ 23k
0
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0
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360
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0
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GBS pipeline POD Error: does not exist or is unreadable
pipeline gbs written 11 months ago by csjlee08 • 10
3
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1
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631
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1
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Tissue Specificity R-package
r package publication tissue specificity pipeline written 12 months ago by YaGalbi • 1.4k
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