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8
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239
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6 follow
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workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
pipeline language written 23 days ago by Bogdan • 680 • updated 23 days ago by WouterDeCoster ♦ 34k
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1
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66
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1
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SplitsTree command line mode
phylogeny command line splitstree pipeline network written 25 days ago by Macspider • 2.6k
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1
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112
views
1
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Error: Snakemake skiped a rule
snakefile snps pipeline snakemake indels written 4 weeks ago by c.clarido • 40 • updated 4 weeks ago by rizoic • 90
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1
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1
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Tutorial: Use a workflow management tool to manage your computational pipelines
workflow management tutorial pipeline written 2.0 years ago by Eric Lim • 1.1k • updated 5 weeks ago by alaincoletta • 90
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Job: BIOINFORMATICS ENGINEER Position - TwinStrand Bioscience, Seattle, WA, USA
pipeline next-gen cloud job sequencing written 5 weeks ago by Careers • 10 • updated 5 weeks ago by genomax ♦ 58k
1
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How to use Snakemake with tools which don't have clearly defined output options for files?
next-gen pipeline snakemake sequencing written 9 weeks ago by Artem Kiselev • 20 • updated 9 weeks ago by WouterDeCoster ♦ 34k
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174
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CWL Error Empty Scatter
cwl workflow pipeline scatter written 10 weeks ago by HL • 0
4
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1
answer
408
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1
answer
Easier Method to Make a Bioinformatics Pipeline Available on the Web
ui bioinformatics web pipeline written 3 months ago by skim • 20
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4
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5.7k
views
10 follow
4
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Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
ncbi taxonomy pipeline tool blast written 6.8 years ago by Daniel • 3.7k • updated 3 months ago by gtrwst9 • 0
0
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356
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Job: Senior Bioinformatics Scientist
pipeline chip-seq job ngs rna-seq wgs written 3 months ago by amit • 0
179
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20
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22k
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66 follow
20
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How To Organize A Pipeline Of Small Scripts Together?
pipeline general written 8.7 years ago by Giovanni M Dall'Olio ♦ 26k • updated 4 months ago by Biostar ♦♦ 20
3
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222
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Tool: SL-quant: finding splice-leader (SL) trans-splicing events in RNA-seq reads.
trans-splicing nematode tool rna-seq pipeline written 4 months ago by Carlo Yague • 4.3k
0
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1
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423
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1
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Error with snakemake
python pipeline snakemake salmon written 5 months ago by Biologist • 90 • updated 5 months ago by WouterDeCoster ♦ 34k
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2
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376
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2
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What is the best pipeline step to merge replicates?
pipeline sequencing written 5 months ago by phosphodiester_bond • 20 • updated 5 months ago by Friederike • 2.3k
0
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240
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Variant analysis on 1 or 2 samples: are the final steps of the GATK pipeline unneccessary?
gatk pipeline snp variant analysis written 5 months ago by YaGalbi • 1.4k
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4
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2.0k
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4
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What is the most popular and best tools/pipeline for small RNA seq analysis?
small rna seq pipeline written 2.3 years ago by FAST_GENOME • 50 • updated 6 months ago by accfree • 0
3
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533
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Tool: SPAR: Web server and scripts for small RNA, short total RNA, miRNA-seq and single-cell small RNA sequencing data processing, analysis, and comparison with DASHR and ENCODE >180 tissues/cell types
web server pipeline tool small rnas encode rna-seq written 6 months ago by pkuksa • 30
10
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3
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5 follow
3
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NGS analysis: how to handle paired-end reads
ngs paired-end reads pipeline analysis written 6 months ago by m93 • 100 • updated 6 months ago by manuel.belmadani • 60
0
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147
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0
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A question about modular pipeline for transcriptome
pipeline transcriptome written 7 months ago by leboralli • 0
4
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305
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0
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Workflow for Releasing HPC Pipeline via Docker
deployment ngs pipeline docker hpc written 7 months ago by aostern • 30
0
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233
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0
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Can I run the EBI metagenomics pipeline locally?
ebi metagenomics pipeline written 7 months ago by alesssia • 480 • updated 7 months ago by h.mon ♦ 21k
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274
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GBS pipeline POD Error: does not exist or is unreadable
pipeline gbs written 8 months ago by csjlee08 • 10
3
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1
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533
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1
answer
Tissue Specificity R-package
r package publication tissue specificity pipeline written 8 months ago by YaGalbi • 1.4k
2
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1
answer
341
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1
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Unit-testing for NGS data analysis pipeline
ngs pipeline unit-testing written 9 months ago by Nandini • 710 • updated 9 months ago by apeltzer • 130
2
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424
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0
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Example data to verify of RNA-Seq Analysis pipeline
tutorial pipeline rna-seq hisat2 written 9 months ago by hkarakurt • 30
1
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1
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1.0k
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1
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Building RNAseq pipeline STAR-RSEM-tximport-DESeq2
pipeline rna-seq written 9 months ago by jkkim • 20 • updated 9 months ago by Macspider • 2.6k
1
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269
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0
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What is special in a BED file
next-gen pipeline sequencing written 9 months ago by jomo018 • 440
0
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1
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311
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1
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detecting mutations in cancer samples belonging to the same cancer type
tumor ngs wes pipeline cancer written 9 months ago by lait • 120 • updated 9 months ago by morovatunc • 380
3
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1
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437
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1
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I'm putting a pipeline into docker, where do I store the tar files for my dependencies, on GitHub or within the Docker image?
pipeline docker written 10 months ago by SaltedPork • 80 • updated 10 months ago by Eric Lim • 1.1k
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Job: 2 Bioinformatics positions available at the European Institute of Oncology, Milan
ngs cancer pipeline clinical genomics job written 10 months ago by Arnaud Ceol • 830
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