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pipeline • reset177
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written 8.4 years ago by
Giovanni M Dall'Olio ♦ 26k
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5 days ago by
Biostar ♦♦ 20
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written 4 weeks ago by
Biologist • 60
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WouterDeCoster ♦ 30k
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written 5 weeks ago by
phosphodiester_bond • 0
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Friederike • 1.8k
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written 24 months ago by
FAST_GENOME • 50
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written 11 weeks ago by
m93 • 40
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11 weeks ago by
manuel.belmadani • 40
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162
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2
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227
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591
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221
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written 5 months ago by
lait • 80
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5 months ago by
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305
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written 6 months ago by
SaltedPork • 70
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6 months ago by
Eric Lim • 740
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written 8 months ago by
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8 months ago by
JJ • 320
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written 5.7 years ago by
Pierre Lindenbaum ♦ 110k
• updated
8 months ago by
Biostar ♦♦ 20
11
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2.1k
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written 6.8 years ago by
Fabian Bull • 1.3k
• updated
10 months ago by
Biostar ♦♦ 20
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4
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6.1k
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9 follow
4
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2
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2
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484
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2
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written 11 months ago by
alons • 250
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11 months ago by
Brian Bushnell ♦ 15k
2
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0
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597
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Recent Votes
- C: Adapter trimming of small RNAseq data
- C: Adapter trimming of small RNAseq data
- A: Adapter trimming of small RNAseq data
- A: Adapter trimming of small RNAseq data
- C: Quick and easy way to get alignment stats from many SAM/BAM files?
- A: How to perform univariate generalized linear models on RNA-seq data?
- C: samtools bedcov vs. bedtools coverage
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Recent Replies
-
C: Adapter trimming of small RNAseq data by
MAPK • 1.2k
Thank you so much for your help.Changing `k=9 mink=6 hdist=0` did work for me.
-
C: Adapter trimming of small RNAseq data by
MAPK • 1.2k
Thank you so much for your help. I changed the `k` parameter `k=9` and that removed both adapters.
-
C: how to evaluate coverage at a regions of interest and generate specificity, sens by
h.mon ♦ 16k
Do you have a bed file with exome probes? If you do, you can use bedtools to achieve several of y...
-
C: Retrieving sequences from Ensembl Archive by
genomax ♦ 51k
Tagging: https://www.biostars.org/u/4156/ to see if he can help.
-
C: Quick and easy way to get alignment stats from many SAM/BAM files? by
ATpoint • 5.5k
So I am not the only one who dislikes the Picard tools :-D
-
A: HiCUP pipeline, hicup_digester script, ApoI genome digestion by
ATpoint • 5.5k
Wouldn't it be the easiest to run that program four times with `-re1`: > AAATTC > AAATTT...
-
C: Quick and easy way to get alignment stats from many SAM/BAM files? by
WouterDeCoster ♦ 30k
If an answer was helpful you should upvote it, if the answer resolved your question you should ma...
-
C: Retrieving sequences from Ensembl Archive by
biostR • 0
biomaRt v2.32.1 is installed which does not allow "genomic" as the seqType. If I try I get the f...
-
C: Quick and easy way to get alignment stats from many SAM/BAM files? by
goodez • 240
Thanks -- not sure how I didn't come across this
-
C: Quick and easy way to get alignment stats from many SAM/BAM files? by
h.mon ♦ 16k
And `samtools flagstat`?
-
C: solution for SPades to assemble genome with low quality data by
h.mon ♦ 16k
The SPAdes version you are using is really old - current version is SPAdes 3.12.0 - and many bugs...
-
C: Quick and easy way to get alignment stats from many SAM/BAM files? by
genomax ♦ 51k
Simply using `samtools stats`?
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