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<prev • 142 results • page 1 of 5 • next >
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Perform one basecommand fot multiple files and get output for each file in CWL
cwl workflow pipeline written 4 days ago by mariafirulevabio • 10 • updated 3 days ago by Tom • 250
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ion torrent pipeline
ion-torrent pipeline snp nextflow variants written 5 days ago by acebolladaso.iacs • 10
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3
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How about my parallel bwa+gatk pipeline?
gatk ngs parallel pipeline written 19 months ago by bluemonster0808 • 40 • updated 18 days ago by Charles Warden ♦ 6.8k
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125
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News: The BioCompute Object App-a-thon is now live!
bioinformatics news app-a-thon pipeline precisionfda written 4 weeks ago by stephens_sarah • 110
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News: The BioCompute Object App-a-thon starts on May 14!
standards bioinformatic computation pipeline news written 5 weeks ago by stephens_sarah • 110
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Snakemake report error:Missing input files for rulle all
pipeline snakemake rna-seq written 7 weeks ago by harrypotterandsbt • 10
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Tool: AllMine, a flexible pipeline for allele mining
wgs pipeline snp rna-seq tool written 7 weeks ago by thomasbersez • 20
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Job: Bioinformatician / Data Manager Position Open - Mount Sinai, New York
chip-seq pipeline atac-seq rna-seq job written 10 weeks ago by jaroslav.bendl • 10
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WDL + cromwell and remote server
cromwel sshfs pipeline wdl written 3 months ago by c.clarido • 50
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7 follow
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What Are Some Sanity Checks That Should Be Performed On Ngs Data?
quality next-gen pipeline sequencing written 8.5 years ago by Jeremy Leipzig ♦ 18k • updated 3 months ago by Biostar ♦♦ 20
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5 follow
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How to parallelize a rule in Snakemake ?
ngs pipeline snakemake rna-seq written 3 months ago by darbinator • 180
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385
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TCGA DNA methylation data pipeline
dna methylation tcga pipeline written 4 months ago by yuabrahamliu • 40 • updated 4 months ago by Charles Warden ♦ 6.8k
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News: SNAKEMAKE course in Berlin. Last 3 places
python news pipeline written 5 months ago by carlopecoraro2 • 920
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How to run Snakemake pipeline from .py file instead of .smk file.
python pipeline snakemake written 5 months ago by Artem Kiselev • 20
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6 follow
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RNA-Seq Differential Expression Bash Scripting Error
pipeline samtools bash scripting rna-seq hisat2 written 5 months ago by timothyfisher101 • 0 • updated 5 months ago by ATpoint ♦ 17k
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How to find true mutations in tumor by removing the background from matched sample?
normalization exome-seq R snp pipeline written 6 months ago by dodausp • 110 • updated 6 months ago by bernatgel • 1.9k
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Bash vs WDL for running GATK
gatk cromwell pipeline linux wdl written 6 months ago by Mehulsharma.253 • 10 • updated 6 months ago by vdauwera • 920
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6 follow
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workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
pipeline language written 7 months ago by Bogdan • 800 • updated 7 months ago by WouterDeCoster ♦ 39k
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357
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SplitsTree command line mode
phylogeny command line splitstree pipeline network written 7 months ago by Macspider • 2.8k
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Error: Snakemake skiped a rule
snakefile snps pipeline snakemake indels written 8 months ago by c.clarido • 50 • updated 8 months ago by rizoic • 190
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Tutorial: Use a workflow management tool to manage your computational pipelines
workflow management tutorial pipeline written 2.6 years ago by Eric Lim • 1.4k • updated 8 months ago by alaincoletta • 140
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Job: BIOINFORMATICS ENGINEER Position - TwinStrand Bioscience, Seattle, WA, USA
pipeline next-gen cloud job sequencing written 8 months ago by Careers • 10 • updated 8 months ago by genomax ♦ 68k
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How to use Snakemake with tools which don't have clearly defined output options for files?
next-gen pipeline snakemake sequencing written 9 months ago by Artem Kiselev • 20 • updated 9 months ago by WouterDeCoster ♦ 39k
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CWL Error Empty Scatter
cwl workflow pipeline scatter written 9 months ago by HL • 0
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650
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1
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Easier Method to Make a Bioinformatics Pipeline Available on the Web
ui bioinformatics web pipeline written 10 months ago by skim • 30
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10 follow
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Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
ncbi taxonomy pipeline tool blast written 7.4 years ago by Daniel • 3.7k • updated 10 months ago by gtrwst9 • 0
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Job: Senior Bioinformatics Scientist
pipeline chip-seq job ngs rna-seq wgs written 10 months ago by amit • 0
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66 follow
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How To Organize A Pipeline Of Small Scripts Together?
pipeline general written 9.3 years ago by Giovanni M Dall'Olio ♦ 26k • updated 11 months ago by Biostar ♦♦ 20
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Tool: SL-quant: finding splice-leader (SL) trans-splicing events in RNA-seq reads.
trans-splicing nematode tool rna-seq pipeline written 11 months ago by Carlo Yague • 4.5k
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Error with snakemake
python pipeline snakemake salmon written 12 months ago by Biologist • 150 • updated 12 months ago by WouterDeCoster ♦ 39k
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