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<prev • 124 results • page 1 of 5 • next >
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How to use Snakemake with tools which don't have clearly defined output options for files?
next-gen pipeline snakemake sequencing written 10 days ago by Artem Kiselev • 20 • updated 10 days ago by WouterDeCoster ♦ 32k
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70
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CWL Error Empty Scatter
cwl workflow pipeline scatter written 19 days ago by HL • 0
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1
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335
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1
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Easier Method to Make a Bioinformatics Pipeline Available on the Web
ui bioinformatics web pipeline written 4 weeks ago by skim • 20
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10 follow
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Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
ncbi taxonomy pipeline tool blast written 6.7 years ago by Daniel • 3.6k • updated 6 weeks ago by gtrwst9 • 0
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311
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Job: Senior Bioinformatics Scientist
pipeline chip-seq job ngs rna-seq wgs written 7 weeks ago by amit • 0
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64 follow
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How To Organize A Pipeline Of Small Scripts Together?
pipeline general written 8.6 years ago by Giovanni M Dall'Olio ♦ 26k • updated 10 weeks ago by Biostar ♦♦ 20
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Tool: SL-quant: finding splice-leader (SL) trans-splicing events in RNA-seq reads.
trans-splicing nematode tool rna-seq pipeline written 10 weeks ago by Carlo Yague • 4.2k
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1
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277
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Error with snakemake
python pipeline snakemake salmon written 3 months ago by Biologist • 70 • updated 3 months ago by WouterDeCoster ♦ 32k
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2
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285
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What is the best pipeline step to merge replicates?
pipeline sequencing written 3 months ago by phosphodiester_bond • 10 • updated 3 months ago by Friederike • 2.1k
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Variant analysis on 1 or 2 samples: are the final steps of the GATK pipeline unneccessary?
gatk pipeline snp variant analysis written 3 months ago by YaGalbi • 1.3k
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What is the most popular and best tools/pipeline for small RNA seq analysis?
small rna seq pipeline written 2.2 years ago by FAST_GENOME • 50 • updated 4 months ago by accfree • 0
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Tool: SPAR: Web server and scripts for small RNA, short total RNA, miRNA-seq and single-cell small RNA sequencing data processing, analysis, and comparison with DASHR and ENCODE >180 tissues/cell types
web server pipeline tool small rnas encode rna-seq written 4 months ago by pkuksa • 30
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5 follow
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NGS analysis: how to handle paired-end reads
ngs paired-end reads pipeline analysis written 4 months ago by m93 • 90 • updated 4 months ago by manuel.belmadani • 60
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A question about modular pipeline for transcriptome
pipeline transcriptome written 5 months ago by leboralli • 0
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265
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Workflow for Releasing HPC Pipeline via Docker
deployment ngs pipeline docker hpc written 5 months ago by aostern • 30
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199
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Can I run the EBI metagenomics pipeline locally?
ebi metagenomics pipeline written 5 months ago by alesssia • 480 • updated 5 months ago by h.mon ♦ 19k
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GBS pipeline POD Error: does not exist or is unreadable
pipeline gbs written 6 months ago by csjlee08 • 10
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1
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Tissue Specificity R-package
r package publication tissue specificity pipeline written 7 months ago by YaGalbi • 1.3k
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1
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282
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Unit-testing for NGS data analysis pipeline
ngs pipeline unit-testing written 7 months ago by Nandini • 660 • updated 7 months ago by apeltzer • 120
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361
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Example data to verify of RNA-Seq Analysis pipeline
tutorial pipeline rna-seq hisat2 written 7 months ago by hkarakurt • 30
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Building RNAseq pipeline STAR-RSEM-tximport-DESeq2
pipeline rna-seq written 8 months ago by jkkim • 20 • updated 8 months ago by Macspider • 2.5k
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235
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What is special in a BED file
next-gen pipeline sequencing written 8 months ago by jomo018 • 360
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263
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detecting mutations in cancer samples belonging to the same cancer type
tumor ngs wes pipeline cancer written 8 months ago by lait • 120 • updated 8 months ago by morovatunc • 380
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1
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373
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1
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I'm putting a pipeline into docker, where do I store the tar files for my dependencies, on GitHub or within the Docker image?
pipeline docker written 8 months ago by SaltedPork • 80 • updated 8 months ago by Eric Lim • 980
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Job: 2 Bioinformatics positions available at the European Institute of Oncology, Milan
ngs cancer pipeline clinical genomics job written 8 months ago by Arnaud Ceol • 830
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How about my parallel bwa+gatk pipeline?
gatk ngs parallel pipeline written 10 months ago by bluemonster0808 • 40 • updated 10 months ago by JJ • 320
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493
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5 follow
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Is validation necessary?
bioinformatics validation publications pipeline written 10 months ago by YaGalbi • 1.3k • updated 10 months ago by genomax ♦ 55k
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single sample somatic variant calling software
ffpe somatic tumor pipeline variants written 2.1 years ago by Zhenyu • 220 • updated 10 months ago by daniel • 30
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Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 5.9 years ago by Pierre Lindenbaum ♦ 112k • updated 11 months ago by Biostar ♦♦ 20
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Pipeline design: from reads to consensus sequences of multiple individuals
consensus pipeline alignment variant mapping written 12 months ago by agathejouet • 0
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