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<prev • 31 results • page 1 of 2 • next >
2
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Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 5 months ago by claping • 0
9
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3
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364
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8 follow
3
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Determine number and length of plasmids in bacterial genome (using something like Prokka)
plasmid bacteria prokka written 5 months ago by suzuBell • 40 • updated 5 months ago by hafiz.talhamalik • 230
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175
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Determine if the reads in a .fasta file of a bacteria contains plasmid
plasmid bacteria chromosome written 5 months ago by suzuBell • 40
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192
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How to interprete PlasmidSeeker results when you have some plasmid clusters?
perl plasmid software usage result written 8 months ago by The Terminator • 10 • updated 6 months ago by Biostar ♦♦ 20
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229
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plasmid spades R1/R2 files?
plasmid sequencing bioinformatics written 7 months ago by sarah.goldstein • 0
1
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1
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391
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1
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Annotate plasmids with custom database + visualization
gene plasmid visualization nanopore annotation written 8 months ago by quimvipu1994 • 0 • updated 8 months ago by Mensur Dlakic • 4.3k
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174
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PlasmidSeeker error with a perl script
perl plasmid permission-denied error written 9 months ago by El Niño • 10
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0
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248
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Bioinformatics tools for Plasmid detection
plasmid tools short-read bioinformatics written 9 months ago by El Niño • 10
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1
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286
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1
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PlasmidFinder installation error
installation plasmid genome annotation linux written 9 months ago by El Niño • 10
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221
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I am not getting any plasmid in my mircobial genome data? why is it so ?
genome plasmid microbial genomics written 11 months ago by hafiz.talhamalik • 230
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463
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Coverage Discrepancy for samtools mpileup
plasmid alignment sequencing written 14 months ago by kspata • 70 • updated 13 months ago by Biostar ♦♦ 20
3
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1
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400
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1
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Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
ion torrent wgs plasmid assembly written 14 months ago by Optimist • 90 • updated 14 months ago by 5heikki ♦ 8.7k
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1
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447
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5 follow
1
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Easy way to assemble sequences from a plasmid insert
sanger clone assembly plasmid written 14 months ago by gbl1 • 70 • updated 14 months ago by colindaven • 2.1k
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376
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Plasmid obtained from assembly is incomplete.
plasmid recycler assembly written 15 months ago by shubhra.bhattacharya • 120
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703
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Search only plasmids from NT database using local BLAST
ncbi assembly nt plasmid written 22 months ago by Prakki Rama • 2.4k
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430
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Identifying bacterial resistance using plasmid sequencing
plasmid resistance written 23 months ago by mohamed_refaat.1992 • 0
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507
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characterizing a plasmid genome
plasmid ngs plasmid genome microbiology written 2.1 years ago by SJ Basu • 30
3
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1
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497
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1
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Plasmidome recovery from metagenomes: why and how?
plasmid metagenomics metagenome plasmids written 2.1 years ago by dark.lord • 20 • updated 2.1 years ago by h.mon ♦ 29k
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How to separate the plasmid protein files from the main chromosomal protein file into a GenBank bacteria directory?
proteome chromosome genbank plasmid written 2.3 years ago by melisechaves • 0 • updated 2.2 years ago by Biostar ♦♦ 20
0
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1
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633
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1
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Any returns on plasmidSPAdes?
de novo assembly plasmid written 2.2 years ago by vmicrobio • 250
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1
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1.5k
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1
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How to remove sequences from a scaffold/contig file?
plasmid assembly written 2.5 years ago by mandigene94 • 20 • updated 2.5 years ago by Brian Bushnell ♦ 17k
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1.0k
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1
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[Solved] Differentiating between chromosomal and plasmid DNA
genome plasmid superbug sequencing cre written 2.7 years ago by Harry • 10
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1.0k
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Best Practice For Denovo Assembly of Bacterial Plasmids
plasmid bacteria denovo written 2.8 years ago by Nick • 270
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762
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Trying to check plasmid alignment
plasmid bam igv written 2.8 years ago by gracie • 20
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3
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2.7k
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3
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Plasmid comparison tool
plasmid written 4.3 years ago by jeccy.J • 50 • updated 3.4 years ago by hillary.figler • 0
8
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1
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2.6k
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1
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Tool: Recycler for plasmid assembly
de novo assembly plasmid metagenome tool assembly graph written 4.0 years ago by Roye Rozov • 90
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1
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880
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1
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Searching for primers (and its rev compl.) in PACMAN
plasmid written 4.0 years ago by umn_bist • 370 • updated 4.0 years ago by Biomonika (Noolean) ♦ 3.1k
4
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1
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1.5k
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1
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What should be an ideal coverage of an assembled putative eukaryotic Plasmid?
assembly sequence spades plasmid written 4.1 years ago by jigarnt • 30 • updated 4.1 years ago by Chris Fields • 2.1k
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2
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2.7k
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2
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Help constructing a restriction map of a linear fragment of DNA?
plasmid restriction molecular biology dna map written 4.1 years ago by bryden.daniel • 0 • updated 4.1 years ago by Istvan Albert ♦♦ 83k
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Is there any pairing info Genome <-> Plasmid in Genbank available?
genome plasmid genbank written 4.4 years ago by mschmid • 150 • updated 4.4 years ago by piet • 1.7k
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