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Error in creating the standard Kraken2 database
kraken2 plasmid format violated written 17 days ago by nathaliaoliveira • 0 • updated 17 days ago by GenoMax ♦ 96k
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123
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problem with 110 kb plasmid assembly, illumina
illumina plasmid written 22 days ago by mewgia • 0 • updated 22 days ago by GenoMax ♦ 96k
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153
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Plasmid sequences seperation from assembly contigs/fastq file of bacterial complete genome?
assembly plasmid written 3 months ago by Shaminur • 140
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490
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5 follow
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Prokka and plasmidspades unexpectedly reveal no plasmid
plasmid spades prokka plasmidspades written 15 months ago by claping • 0 • updated 4 months ago by appiahv • 0
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160
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predict plasmid from bacterial WGS
wgs bacteria plasmid chromosome written 4 months ago by zhangdengwei • 130
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152
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How to determine plasmid or chromosomal origin?
origin plasmid chromosome written 5 months ago by Audrey • 40
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196
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How to detect which plasmids occur multiple times in a collection of fragmented whole genome assemblies?
plasmid next-gen blast alignment sequencing written 7 months ago by bas1993 • 40 • updated 7 months ago by hugo.avila • 180
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228
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Rearrange contigs to start with repA
assembly plasmid written 9 months ago by v.shapovalova1 • 10
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295
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1
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Plasmid Phylogeny from Whole genome sequencing
phylogeny assembly phylogenetic tree plasmid written 9 months ago by karthick.1087 • 20 • updated 9 months ago by gayachit • 200
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8 follow
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Determine number and length of plasmids in bacterial genome (using something like Prokka)
plasmid bacteria prokka written 16 months ago by suzuBell • 60 • updated 16 months ago by hafiz.talhamalik • 290
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Determine if the reads in a .fasta file of a bacteria contains plasmid
plasmid bacteria chromosome written 16 months ago by suzuBell • 60
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327
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How to interprete PlasmidSeeker results when you have some plasmid clusters?
perl plasmid software usage result written 19 months ago by The Terminator • 10 • updated 17 months ago by Biostar ♦♦ 20
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plasmid spades R1/R2 files?
plasmid sequencing bioinformatics written 17 months ago by sarah.goldstein • 0
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Annotate plasmids with custom database + visualization
gene plasmid visualization nanopore annotation written 18 months ago by quimvipu1994 • 0 • updated 18 months ago by Mensur Dlakic • 9.0k
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347
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PlasmidSeeker error with a perl script
perl plasmid permission-denied error written 20 months ago by El Niño • 10
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618
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Bioinformatics tools for Plasmid detection
plasmid tools short-read bioinformatics written 20 months ago by El Niño • 10
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578
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1
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PlasmidFinder installation error
installation plasmid genome annotation linux written 20 months ago by El Niño • 10
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I am not getting any plasmid in my mircobial genome data? why is it so ?
genome plasmid microbial genomics written 21 months ago by hafiz.talhamalik • 290
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613
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Coverage Discrepancy for samtools mpileup
plasmid alignment sequencing written 2.1 years ago by kspata • 70 • updated 2.0 years ago by Biostar ♦♦ 20
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571
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Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
ion torrent wgs plasmid assembly written 2.0 years ago by Optimist • 160 • updated 2.0 years ago by 5heikki ♦ 9.3k
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Easy way to assemble sequences from a plasmid insert
sanger clone assembly plasmid written 2.1 years ago by gbl1 • 80 • updated 2.1 years ago by colindaven • 2.6k
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Plasmid obtained from assembly is incomplete.
plasmid recycler assembly written 2.2 years ago by shubhra.bhattacharya • 120
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Search only plasmids from NT database using local BLAST
ncbi assembly nt plasmid written 2.7 years ago by Prakki Rama • 2.4k
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571
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Identifying bacterial resistance using plasmid sequencing
plasmid resistance written 2.8 years ago by mohamed_refaat.1992 • 0
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characterizing a plasmid genome
plasmid ngs plasmid genome microbiology written 3.0 years ago by SJ Basu • 30
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Plasmidome recovery from metagenomes: why and how?
plasmid metagenomics metagenome plasmids written 3.0 years ago by dark.lord • 30 • updated 3.0 years ago by h.mon ♦ 32k
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How to separate the plasmid protein files from the main chromosomal protein file into a GenBank bacteria directory?
proteome chromosome genbank plasmid written 3.2 years ago by melisechaves • 0 • updated 3.1 years ago by Biostar ♦♦ 20
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Any returns on plasmidSPAdes?
de novo assembly plasmid written 3.1 years ago by vmicrobio • 270
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1
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How to remove sequences from a scaffold/contig file?
plasmid assembly written 3.4 years ago by mandigene94 • 30 • updated 3.4 years ago by Brian Bushnell ♦ 17k
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[Solved] Differentiating between chromosomal and plasmid DNA
genome plasmid superbug sequencing cre written 3.6 years ago by Harry • 10
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