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4
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Can Plink 1.07 set-hh-missing output VCF?
plink written 2 days ago by dec986230 • updated 2 days ago by chrchang5237.1k
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PED file PLINK
plink snp written 5 days ago by fatma.mokhtar10 • updated 5 days ago by zx87549.3k
7
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1
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136
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1
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Validatingm Polygenic Risk Scores from PRSice
prsice prs genetics plink written 8 days ago by ml110 • updated 5 days ago by Sam2.9k
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45
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54 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes tutorial pca plink ethnicity written 22 months ago by Kevin Blighe61k • updated 6 days ago by 17bcs0300
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1.0k
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the XP-EHH instruction
vcf xp-ehh haplotype plink phased written 24 months ago by Victor10 • updated 8 days ago by shanshuwen900
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5.5k
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1
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How Plink LD-pruning selects which one of the pair SNPs in LD.
ld-pruning plink snp written 5.4 years ago by dadoudou10 • updated 10 days ago by Biostar ♦♦ 20
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Error: Failed to open [Covariate File]
gwas covariate plink snp file written 3.6 years ago by Mahantesh Biradar30 • updated 12 days ago by zx87549.3k
3
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80
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Possible to add `chr` prefix to each chromosome in PLINK?
plink written 13 days ago by curious320 • updated 13 days ago by chrchang5237.1k
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getting bed files into R
R haploid data plink bedfiles written 15 days ago by wrab42510 • updated 15 days ago by jordrell0
59
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4
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36k
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29 follow
4
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How To Analyze Imputed Gwas Data
gwas imputation plink snp R written 9.3 years ago by Stephen2.7k • updated 15 days ago by Mahantesh Biradar30
5
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1
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105
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Pruning GWAS summary statistics for LD
plink ldpred pruning ld cojo written 16 days ago by ika30 • updated 16 days ago by Sam2.9k
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94
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Q: Error converting vcf to hap
software error plink written 17 days ago by s15331940 • updated 16 days ago by chrchang5237.1k
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2
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1.3k
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2
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Breaking PLINK.bim .bed .fam files into chromosomes
plink snp written 12 months ago by safiradrak10 • updated 18 days ago by augmntd4th10
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Sequence of steps in quality control of genetic data
genome quality control imputation plink written 20 days ago by kl0 • updated 20 days ago by genomax85k
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1.3k
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1
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From VCF, create only .tfam file
vcf vcftools tped tfam plink written 4.4 years ago by mpauper20 • updated 21 days ago by chrchang5237.1k
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Viewing Plink files in Haploview
haplotypes plink haploview written 6.1 years ago by angel00719870 • updated 27 days ago by Kevin Blighe61k
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PLINK : Problem with .assoc file
assoc plink written 4 weeks ago by cdg0 • updated 4 weeks ago by Sam2.9k
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56 follow
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
vcf 1000 genomes tutorial pca plink written 2.8 years ago by Kevin Blighe61k • updated 4 weeks ago by appiahv0
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X-chromsome association testing
plink snp snptest written 3 months ago by KS370 • updated 5 weeks ago by Biostar ♦♦ 20
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1
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SNP scoring using PLINK
plink snp written 4.9 years ago by GabrielMontenegro560 • updated 5 weeks ago by Biostar ♦♦ 20
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