Showing: plinkreset
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5
votes
1
answer
58
views
1
answer
PLINK: Error: Invalid chromosome code 'chr11_KI0721v1_random'
vcf plink written 3 days ago by bsmith030465140 • updated 3 days ago by chrchang5234.8k
0
votes
1
answer
72
views
1
answer
0
votes
0
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1.1k
views
0
answers
0
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0
answers
134
views
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PLINK error message
software error genome plink snp gene written 6 weeks ago by alhamidi.reem0 • updated 9 days ago by Biostar ♦♦ 20
0
votes
0
answers
65
views
0
answers
Making a phenotype file in PLINK
gwas make-pheno plink phenotype data written 10 days ago by 123sanjanagupta0 • updated 10 days ago by genomax63k
5
votes
3
answers
334
views
6 follow
3
answers
2
votes
1
answer
77
views
1
answer
PLINK: Identical A1 and A2 alleles on line 215
plink written 17 days ago by ommegang10 • updated 16 days ago by chrchang5234.8k
0
votes
1
answer
394
views
1
answer
How to extract proxy SNPs using 1000G vcf for a list of SNPs
1000g proxy vcftools snp plink written 19 days ago by janhuang.cn140 • updated 19 days ago by chrchang5234.8k
11
votes
2
answers
22k
views
2
answers
Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 4.5 years ago by roll260 • updated 19 days ago by hakimeazarafra0
1
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1
answer
115
views
1
answer
0
votes
0
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73
views
0
answers
0
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0
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133
views
0
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3
votes
1
answer
2.4k
views
1
answer
Two Plink map/ped files refuse to merge.
plink written 3.7 years ago by devenvyas570 • updated 27 days ago by zx87546.7k
2
votes
1
answer
863
views
1
answer
lgen to ped using plink
lgen plink mismatch written 18 months ago by tarek.mohamed240 • updated 27 days ago by zx87546.7k
3
votes
1
answer
1.4k
views
1
answer
Plink error File write failure
plink snp written 2.8 years ago by lmobuchon30 • updated 27 days ago by zx87546.7k
3
votes
0
answers
894
views
0
answers
Error in opening map file in PLINK
plink snp written 20 months ago by Aparna20 • updated 27 days ago by zx87546.7k
1
vote
1
answer
1.7k
views
1
answer
Writing PLINK PED and MAP files... Error: Could not open temporary file.
format plink written 16 months ago by angelaparody30 • updated 27 days ago by zx87546.7k
3
votes
1
answer
2.1k
views
1
answer
Fail to open file in plink
plink ped written 19 months ago by janhuang.cn140 • updated 27 days ago by zx87546.7k
4
votes
1
answer
144
views
1
answer
Get SNP information with association test with PLINK
gwas plink written 28 days ago by landscape95160 • updated 28 days ago by zx87546.7k
0
votes
0
answers
161
views
0
answers
Many 0 in ped file converted from vcf genomic data
vcf gwas plink snp written 29 days ago by shawn20 • updated 28 days ago by zx87546.7k
1
vote
0
answers
307
views
0
answers
2
votes
0
answers
143
views
0
answers
1001 Arabidopsis SNP
vcf plink snp written 4 weeks ago by shawn20 • updated 4 weeks ago by zx87546.7k
1
vote
1
answer
119
views
1
answer
PLINK --r2 square: snp ids are not written
snp plink ld r2 written 5 weeks ago by Hamid10 • updated 5 weeks ago by chrchang5234.8k
2
votes
1
answer
150
views
1
answer
PLINK dosage data - convert and/or read in R
plink written 5 weeks ago by Travis0 • updated 5 weeks ago by chrchang5234.8k
3
votes
1
answer
2.7k
views
1
answer
Convert 80 VCF to PED and MAP plink files
vcf format plink written 2.8 years ago by lmobuchon30 • updated 5 weeks ago by zx87546.7k
17
votes
4
answers
289
views
10 follow
4
answers
Remove duplicates in an extremely large text file
uniq plink snp awk written 5 weeks ago by OAJn863450 • updated 5 weeks ago by Santosh Anand4.6k
1
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0
answers
111
views
0
answers
0
votes
0
answers
130
views
0
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Flipped Ref allele in VCF file
vcf plink snp written 6 weeks ago by Phoenix Mu0
0
votes
0
answers
140
views
0
answers
Plink 1.9 "File read failure" error when merging with --bmerge
gwas plink error written 6 weeks ago by svendula0 • updated 6 weeks ago by RamRS20k
21
votes
0
answers
2.2k
views
31 follow
0
answers
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