Showing: plinkreset
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How to remove duplicate sites and inconsistent sites from a VCF?
vcf michigan impute server plink written 9 weeks ago by Sharon390 • updated 2 days ago by Biostar ♦♦ 20
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GWAS Make bed file from fam and bim and Polygenic Risk Score calculation
gwas plink written 2 days ago by landscape95150 • updated 2 days ago by zx87546.2k
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PLINK: Change affection status
plink written 3.6 years ago by bsmith030465120 • updated 5 days ago by zx87546.2k
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PLINK meta-analysis when there is SNP for just one study
plink written 6 days ago by rkl0 • updated 5 days ago by zx87546.2k
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Allelic scoring in PLINK
score grs prs plink written 7 days ago by lee.stopak10
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III in VCF format (old)
vcf 1000 genomes tutorial pca plink written 16 months ago by Kevin Blighe35k • updated 8 days ago by alicodendrochit0
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why my ROH file result does not include some chromosome
snp plink runs of homozygosity. 50k ovine written 16 days ago by mary200 • updated 11 days ago by Kevin Blighe35k
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PLINK assoc input: can it be two vcf files case/control?
vcf snps association plink written 22 days ago by Pin.Bioinf210 • updated 22 days ago by Kevin Blighe35k
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PLINK Error: No valid entries in --score file.
plink snp written 7 weeks ago by Cindy20 • updated 27 days ago by Biostar ♦♦ 20
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Converting Affymtrix SNP data to plink and VCF formats
vcf gwas snp plink affymetrix written 10 months ago by robjohn70000120 • updated 4 weeks ago by Biostar ♦♦ 20
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Filter out related individuals from a vcf file using Plink or Hail
vcf hail plink written 14 months ago by DataFanatic120 • updated 4 weeks ago by zx87546.2k
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Illumina final report file to PLINK
illumina sequencing plink gwas written 5 weeks ago by f.abbondanza940 • updated 5 weeks ago by zx87546.2k
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How to convert a meta-analysis file from PLINK (.meta) to a .csv or.txt to be read into R?
R plink written 6 weeks ago by rkl0 • updated 5 weeks ago by zx87546.2k
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Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000 genomes tutorial pca plink ethnicity written 4 months ago by Kevin Blighe35k • updated 7 weeks ago by mpinsach0
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--covar Plink Genome wide association
covar gwas covariance plink snp written 7 weeks ago by uskhan.khan50 • updated 7 weeks ago by finswimmer8.9k
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LD pruning before imputation?
snp impute plink ld written 7 weeks ago by whtopjazz0 • updated 7 weeks ago by zx87546.2k
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Meta-analysis GWAS using statistical summaries in numerous studies
plink snp written 7 weeks ago by somayeh bakhshalizadeh20 • updated 7 weeks ago by zx87546.2k
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Convert VCFf file to plink ped/map format while filtering the SNPs
plink map ped vcftools written 4.3 years ago by roll240 • updated 8 weeks ago by zx87546.2k
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