Showing: plinkreset
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errors in running smartpca
eigensoft gwas plink smartpca written 5 months ago by ShirleyDai20 • updated 1 day ago by Vincent Laufer710
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Filtering BIM, BED, and FAM files
filtering bfiles genotyping plink bed files written 3 days ago by Mazza10 • updated 3 days ago by cpc540
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Problem using plink file with ADMIXTURE
genome admixture plink linux written 5 days ago by beneficii20 • updated 5 days ago by Philipp Bayer3.9k
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GWAS analysis on PLINK
plink snp written 18 days ago by BlackHole0 • updated 18 days ago by willgilks130
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Linkage disequilibrium decay sanity check
linkage disequilibrium plink snp written 10 weeks ago by biogirl110 • updated 21 days ago by willgilks130
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Calculating Genomic Inflation Factor
gwas plink written 4.8 years ago by Debs20 • updated 4 weeks ago by JM88140
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PLINK- chromosome ID disappears after running association tests
gwas plink snp written 5 weeks ago by melaniesmontes0 • updated 4 weeks ago by WouterDeCoster13k
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Viewing Plink files in Haploview
haplotypes plink haploview written 2.8 years ago by angel00719870 • updated 5 weeks ago by melaniesmontes0
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merging plink files
plink mergefiles written 5 weeks ago by stalo_9210
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How to correct invalid genotype in ped file ?
plink snp genotype written 15 months ago by deepue60 • updated 7 weeks ago by Biostar ♦♦ 10
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genotype concordance of minor allele carriers
snp plink concordance genotypes written 3 months ago by auraf8510 • updated 10 weeks ago by Biostar ♦♦ 10
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PLINK and probABEL results differ
gwas interaction plink probabel logistic written 11 weeks ago by lucia0 • updated 10 weeks ago by Biostar ♦♦ 10
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continuos covariates in Plink
plink logistic written 10 weeks ago by Laura20 • updated 10 weeks ago by Floris Brenk750
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Filtering Imputation output: how to filter on a VCF INFO field
imputation minimac3 plink filtering vcftools written 6 months ago by mmagoo640 • updated 10 weeks ago by Tao110
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How to merge two files genotype and ped In Linux? I sample files as follows.
plink linux written 11 weeks ago by mm0 • updated 11 weeks ago by Devon Ryan62k
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