Showing: plinkreset
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Recode vcf with specified reference allele
vcf vcftools plink flip reference allele written 14 hours ago by wangdavid7580 • updated 6 hours ago by Pierre Lindenbaum100k
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Convert fastq to plink .bed
bed fastq bam plink written 3 days ago by moryfranklin220 • updated 2 days ago by WouterDeCoster23k
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comparison of exome data to the 1000Genomes WGS data
exome 1000genomes plink snp written 3 days ago by gabili0 • updated 3 days ago by trausch760
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How to convert plink.raw to map and ped files in any software
R plink snp sequencing written 8 days ago by bha0 • updated 8 days ago by Kevin Blighe6.5k
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Merging inconsistencies in PLINK
plink snp written 10 weeks ago by GabrielMontenegro330 • updated 10 days ago by Biostar ♦♦ 20
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How do I remove duplicated by position SNPs using PLink?
plink snp written 17 days ago by bha0 • updated 15 days ago by Kevin Blighe6.5k
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Plink filtering with physical position using a text file
plink written 17 days ago by Sheila180 • updated 16 days ago by chrchang5232.8k
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Conditional analysis on dosage file -what program to use?
conditional-analysis gwas association plink written 12 weeks ago by Mamta400 • updated 19 days ago by pfs140
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What are the typical IBD PIHAT values calculated by PLINK for duplicate samples?
plink ibd written 27 days ago by anp37580 • updated 27 days ago by MAPK1.1k
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PLINK 1.9 mendel errors trios
mendelian error plink written 4 weeks ago by Wietje10 • updated 4 weeks ago by chrchang5232.8k
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logistic regression with PLINK
plink logistic regression written 5 weeks ago by charlie.gaoc0 • updated 5 weeks ago by chrchang5232.8k
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Runs of homozygosity
roh plink overlapping roh written 6 weeks ago by Sharon60 • updated 6 weeks ago by Kevin Blighe6.5k
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PLINK2 recode ped flag issue
vcf plink2 plink ped written 6 weeks ago by emyli0 • updated 6 weeks ago by tarek.mohamed110
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loadling bcf2 file in plink
bcf plink written 7 weeks ago by janhuang.cn70 • updated 7 weeks ago by Kevin Blighe6.5k
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Subsetting individuals in PLINK when IDs contain underscores "_"
plink written 7 weeks ago by GabrielMontenegro330 • updated 7 weeks ago by pfs140
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Using Plink, get allele frequencies for a subset of individuals
individuals plink subset written 7 weeks ago by Mr Locuace30 • updated 7 weeks ago by pfs140
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plink calculating LD using R2 command
plink ld r2 written 7 weeks ago by janhuang.cn70 • updated 7 weeks ago by pfs140
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