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Individual IDs in .vcf format are not the same as in the original plink format that I converted to .vcf using plink/seq

vcf plink/seq .bed plink convert file format written 3.8 years ago by spider_monkey • 10

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Perl script for reformatting a plink/seq output file

perl plink/seq allele genotype reformat written 5.3 years ago by plink_9857 • 50

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Loading IMPUTE2 dosage data into plink/seq

dosage plink/seq impute2 written 5.6 years ago by potassiumiodide0990 • 80 • updated 5.4 years ago by Vincent Laufer • 1.1k

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Recent Replies

C: Issue when merging FastQ by gayal25016 • 0
The issue is that, with my long reads, I cannot use overlap to merge PE into SE dataset, which is...
A: htseq-count error: "does not contain 'gene_id' by eennadi • 0
I have similar issues and have tried the various guides provided. My GFF file ##gff-version 3 ...
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It is actually a frequency table I got it using Prophecy (Emboss module). I need to check the num...
C: how to unique a file row-wise? by finswimmer ♦ 14k
Hello https://www.biostars.org/u/21479/, how is this question related to bioinformatics? Is the ...
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human_9606_b151_GRCh38p7 is dbSNP release version 151 with co-ordinates for `GRCh38.p7`
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GSEA as an algorithm is dependent on comparing a control cohort with a treated cohort to calculat...
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can you please explain more?
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SE stands for standard error. You don't want that.
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Thanks Kevin. it was helpful.
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What exact samples are they? Depending on cancer, tissue, and patient information they could be v...
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Both of them are cancerous cells. They are expected to be very similar. So, MA plot should be not...

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