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Window-based Fst analysis

population genetic fst written 4 months ago by seta • 1.2k

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170

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Making random SNP with similar allele frequency and recombination rate to my SNP list

allele frequency random snp population genetic written 6 months ago by seta • 1.2k

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992

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ROH Comparing for different popoulation

homozygosity population genetic roh written 4.4 years ago by yasminkot2012 • 0 • updated 4.1 years ago by Biostar ♦♦ 20

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Recent Replies

C: Differential expression tool that can take TPM as input? by kristoffer.vittingseerup • 2.9k
the length normalisation does not make to much of a difference as it is hopefully the same in all...
C: TCGA mutations on Cbioportal by Kevin Blighe ♦ 52k
This is just a comment: I never expect any of those datasets to line up perfectly anymore. Also, ...
C: Definition of an isoform switching? by kristoffer.vittingseerup • 2.9k
Great answer (I have to say that since I'm the author of the refrence :D). Just want to add that ...
A: Could not locate bowtie index (miRDeep2 analysis) by Barry Digby • 230
Try -p genome. Edit* Checked previous times I have used mapper.pl and nope, that's not it....
C: Distinguish between homo- or heterozygote alleles if you sequence for a gene by myrrlicht • 0
How should I know the differences in few nucleotides in the two alleles if this is what i want to...
C: Overlap two variable by zx8754 ♦ 8.7k
I think "PDD3 70-90" is already covered by "50-100", so it drops off. Might be a job for [Genomi...
C: Analysing BAM files by User000 • 270
The 5 genomes are just different varieties of the same species... So, just to be sure the methods...
C: converting Ovis aries Ensembl gene IDs into human orthologue Ensembl gene IDs by taghizadehkobra • 0
Thank you dear Emily
C: QUAST ignoring bam files by liorglic • 110
Yes they are - there is a .bam.bai file for every bam.
C: QUAST ignoring bam files by julien.fouret.fr • 20
Are you bam files indexed ( with samtools index ) ?
A: QIIME 2 Denoising using DADA2 by rahul.yadav • 10
Thank You so much gb for sharing your knowledge.
A: Reference set ExomeDepth by Bouzid.a • 0
Hi Angele, Did you find clarifications to your questions? I encountered the same ambiguity in my ...

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