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Siavash Salek Ardestani • 20
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Recent Replies
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A: Variant Call Format (.vcf) conversion to .bam by
swbarnes2 ♦ 8.5k
To quote another poster in these parts, what you are asking is like asking how to turn a steak in...
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C: Differential Abundance Analysis wih DESeq2 and metabolites as continuous predict by
greenm11 • 0
Hi, Sorry I should have made it more clear: I repeat this process for each timepoint that has i...
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C: testing set for RNA-seq AML by
Ali • 0
Thanks for your reply I use TCGA data was fine to download and run the analysis where the sampl...
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C: empty fastq files created by docker bcl2fastq2 v2.20 OSX by
akh22 • 40
The input folder appears to be intact, containing everything original except the samplesheet.csv...
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C: how to split M3VCF by ID? by
Pierre Lindenbaum ♦ 130k
I had to google for m3vcf: https://genome.sph.umich.edu/wiki/M3VCF_Files > is there an automa...
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C: Difference in imputation between platforms and RS names by
anamaria • 100
it seems that characteristics of overlapping SNPs is that there is not many of them who have very...
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C: testing set for RNA-seq AML by
newbio17 • 230
Have you tried [GEO][1] or [cBioPortal][2] to see if they have any dataset you could use? [1]...
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C: RNASeq data: STAR low alignment score by
newbio17 • 230
If you want another method of checking for rRNA to double check, you can try `split_bam.py` from ...
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C: Transcriptome analysis of two closely related plant species by
Istvan Albert ♦♦ 84k
yes, you can split a bam file by chromosome, and spawn a separate process with gnu parallel
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C: Compare transcriptome between different species of Leishmania by
Dunois • 20
`Prokka` with eukaryotes though? Leishmania spp. are eukaryotes.
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C: Error running cutadapt in multithread mode by
Francesco • 10
Thank you, I created a conda enviroment for cutadapt with python 3.7 and now it's working in mult...
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C: Difference in imputation between platforms and RS names by
anamaria • 100
I completely understand you. And I already confirmed analysis I did in 2020 in other known GWAS r...
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