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Why is VCFTools excluding so many SNPs in its Tajima D calculation?
vcftools snp population genetics written 6 weeks ago by Ace • 70 • updated 12 days ago by Biostar ♦♦ 20
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How many Individuals should I use in order to define haploblocks?
sample size haploblocks ld population genetics written 15 days ago by rimgubaev • 170
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Job: Research Associate in Computational Population Genetics (GENOME RUSSIA CONSORTIUM)
bioinformatics population genetics job genomics R written 5 weeks ago by cgb@spbu • 70
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What causes some individuals to be separated clusters from the population the in PCA
pca snp population genetics written 6 weeks ago by haneenih7 • 50
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Fu's FS in Arlequin and DnaSP
population genetics statistics written 4.3 years ago by helena.batalha • 0 • updated 8 weeks ago by ursulajaros11 • 0
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How to sort the Q matrix from structure analyses based on countires first and then within the countires sort by q value
R population genetics written 4 months ago by haneenih7 • 50 • updated 9 weeks ago by Biostar ♦♦ 20
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Population Genetics from SNP data- no VCF
R snp population genetics written 3 months ago by vidyavuru • 0 • updated 12 weeks ago by Biostar ♦♦ 20
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How to prep MAFFT alignment files for use in R packages ape and pegas?
R pegas alignment population genetics written 3 months ago by juliuspasion1994 • 10
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166
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Statistical test to test the relationship between genetic strucutre and climate variables
R snp population genetics written 3 months ago by haneenih7 • 50
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What is the diffeernce between singletons and doubletons - VCFtools
snp population genetics written 3 months ago by haneenih7 • 50
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237
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Tess3r package, Barplots: How to have a specific color for each cluster and assign a new color to the new cluster when plotting higher K
R population genetics written 4 months ago by haneenih7 • 50
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149
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How can I confirm that detection of selective sweep is not by chance?
selection genomics population genetics written 4 months ago by haneenih7 • 50
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180
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Detection of selection by calculating nucleotide diversity ratio (pi) pi wild/pi cultivated
selection genomics population genetics written 4 months ago by haneenih7 • 50
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253
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How to calculate the ratio of nucleotide diversity (pi) between two population in each window
R bash population genetics written 4 months ago by haneenih7 • 50 • updated 4 months ago by benformatics • 1.2k
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Measure of SV genomic diversity in a population
structural variants dna-seq population genetics written 5 months ago by lucas.lochovsky • 0
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5 follow
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Download full list of SNPs and their coordinates in hg38
hg38 dbsnp snp snpsnap population genetics written 19 months ago by gaelgarcia • 150 • updated 5 months ago by Shicheng Guo • 7.8k
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Can I build a phylgenetic tree using SNPs obtained by differen techniques?
array gbs snp population genetics written 7 months ago by rimgubaev • 170
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336
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Why switch negative values in kinship matrix to zeros?
spagedi kinship tassel population genetics written 7 months ago by rimgubaev • 170 • updated 7 months ago by Asaf ♦ 6.5k
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238
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Can I run population genetics stats on my phased datasets?
genome R tajimas d population genetics written 7 months ago by nataliagru1 • 30
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519
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How to build a phylogenetic tree using fasta obtained from VCF file?
vcf mega population genetics written 8 months ago by rimgubaev • 170
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184
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How to add a individuals IDs to admixture output?
admixture population genetics written 8 months ago by rimgubaev • 170
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264
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Calculating neutrality statistics like Tajima D with structural variants
structural variants dna-seq population genetics written 8 months ago by lucas.lochovsky • 0
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232
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Structure produces no result
structure population genetics written 8 months ago by rimgubaev • 170
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242
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outliers in XP-EHH
population genetics outliers xp-ehh written 9 months ago by prasundutta87 • 360
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Difference between Private SNPs and Singleton SNPs
variant calling gatk snps snp population genetics written 10 months ago by prasundutta87 • 360
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310
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Population Genetics and Allele Richness
genome R population genetics fasta written 10 months ago by Myo Naung • 10 • updated 10 months ago by zx8754 ♦ 8.8k
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341
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What does LnP(D) per clusters K plot means?
gwas population genetics written 10 months ago by rimgubaev • 170
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1
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717
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Tajima's D Significant test
genetics population genetics written 10 months ago by Myo Naung • 10 • updated 10 months ago by Fabio Marroni • 2.4k
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271
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Did both mitochondrial DNA and the Y chromosome coalesce within the last several hundred thousand years ?
demography human population genetics written 11 months ago by rprog008 • 50
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Why we simulate genetic data?
simulation population genetics written 11 months ago by rprog008 • 50
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