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20
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3
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1.4k
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3
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Gwas Peak In Only One Population, Why?
gwas population association written 7.4 years ago by Sally • 30 • updated 4 weeks ago by Biostar ♦♦ 20
11
votes
3
answers
3.1k
views
6 follow
3
answers
How To Get Snps Matrix For Population Genetic Ananlysis From Snps Variant Files
matrix population genetics snp written 7.9 years ago by Jianfengmao • 310 • updated 6 weeks ago by RamRS ♦ 18k
2
votes
1
answer
2.0k
views
1
answer
Estimating Effective Population Size (Ne) From Rnaseq Data
population next-gen sequencing written 7.3 years ago by Yannick Wurm • 2.3k • updated 9 weeks ago by Ben Sutherland • 10
2
votes
1
answer
185
views
1
answer
PCA implementation in plink
population pca plink written 10 weeks ago by prasundutta87 • 250 • updated 10 weeks ago by chrchang523 ♦ 4.0k
0
votes
0
answers
194
views
0
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f3 statistics tutorial or ppt
popul population genetics written 12 weeks ago by Genotepes • 940
1
vote
0
answers
149
views
0
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Best program for population structure analyses of whole genome SNP data of many individuals
genome software population sequencing written 3 months ago by rc16955 • 50
2
votes
0
answers
364
views
0
answers
Plot linkage disequilibrium along chromosome
linkage R next-gen population chromosome written 7 months ago by Roy • 10 • updated 5 months ago by Biostar ♦♦ 20
4
votes
1
answer
702
views
1
answer
Phasing without a reference panel
hapmap population genotype phasing written 8 months ago by chadapohn.chaosrikul • 0 • updated 8 months ago by Wietje • 150
5
votes
2
answers
407
views
2
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ExAC includes WES of phenotyped population
population exac snp written 9 months ago by CY • 200 • updated 9 months ago by Chris Miller ♦ 20k
0
votes
1
answer
715
views
1
answer
Finding SNPs in population data: help with pipeline
genome population snp pileup written 17 months ago by Alex • 0 • updated 10 months ago by Pierre Lindenbaum ♦ 113k
9
votes
1
answer
3.8k
views
6 follow
1
answer
Why 4Ne Rather Than 2Ne?
population written 6.6 years ago by Lds • 380 • updated 14 months ago by Biostar ♦♦ 20
0
votes
0
answers
749
views
0
answers
Looking for Population Genetics Simulation Software
genome simulation population written 2.0 years ago by xescape • 0 • updated 17 months ago by Biostar ♦♦ 20
2
votes
1
answer
939
views
6 follow
1
answer
imputation only choose one population as reference panel
shapeit impute2 population gwas written 19 months ago by Peter Chung • 70 • updated 17 months ago by ShirleyDai • 40
1
vote
0
answers
648
views
0
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multi vcf population genomics analysis
vcf population written 21 months ago by guillaume.rbt • 450
0
votes
0
answers
977
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0
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Population statistics VCF file format for Cartagenia?
vcf population format statistics written 2.0 years ago by hhj • 0 • updated 2.0 years ago by geek_y ♦ 8.7k
0
votes
0
answers
674
views
0
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Inferring Local Ethnicity of the Reference Genome
population reference ethnicity inferrence written 2.1 years ago by anovak • 40
3
votes
1
answer
654
views
1
answer
Population stratification in targeted sequencing?
stratification population exac sequencing written 2.2 years ago by peris • 110 • updated 2.2 years ago by Floris Brenk • 860
5
votes
2
answers
768
views
2
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Simulating Bacterial Population
reads population simulate bacterial written 2.3 years ago by Sama • 30 • updated 2.3 years ago by Brian Bushnell ♦ 16k
0
votes
0
answers
855
views
0
answers
How does breed-specific permutation account for population stratification?
permutation stratification population snp written 2.4 years ago by Tom • 20
3
votes
2
answers
876
views
2
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detecting SNP allele and genotype frequencies from 1000 genomes at ensembl
population frequency allele mysql genotype written 2.5 years ago by Viktor Bojovic • 0
2
votes
2
answers
3.7k
views
2
answers
Admixture Program
population genetics written 6.4 years ago by Motor Genetic • 90 • updated 2.5 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.0k
views
1
answer
Detecting fine population structure such as might confound a rare variant association study
substructure rare variant population gwas confound written 3.1 years ago by Vincent Laufer • 1000 • updated 2.7 years ago by Biostar ♦♦ 20
0
votes
0
answers
614
views
0
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Piloting population frequencies of different populations
population R next-gen vfc snp written 3.0 years ago by kv.shamsudheen • 0 • updated 3.0 years ago by Giovanni M Dall'Olio ♦ 26k
1
vote
1
answer
3.7k
views
1
answer
Software For Amova And Population Comparison
population variation written 4.7 years ago by reis.a.rita • 0 • updated 3.2 years ago by sana.mystudies • 60
4
votes
1
answer
3.2k
views
1
answer
Which simulator to use for generating fastq reads from a population of haploids
simulator fastq population haploid written 3.8 years ago by Joseph Hughes • 2.6k
3
votes
1
answer
1.6k
views
1
answer
Analyse Population Genomics Data With Different Coverage
next-gen population coverage written 6.5 years ago by Plantae • 380 • updated 3.6 years ago by Biostar ♦♦ 20
4
votes
2
answers
1.6k
views
2
answers
Individual or population level variant calling?
variant calling gatk forum population snp written 3.7 years ago by nbhardwaj • 110 • updated 3.7 years ago by bcosc • 20
14
votes
3
answers
2.5k
views
5 follow
3
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Are Snps Frequencies Between Individuals Or Chromosomes
population allele snp genotyping written 7.5 years ago by Pi • 510 • updated 3.9 years ago by Biostar ♦♦ 20
1
vote
1
answer
1.5k
views
1
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Perl program needed to predict size of populatio of organisms. Program needs to use loop for output.
perl population written 4.2 years ago by Sidney • 0 • updated 4.2 years ago by Gjain ♦ 5.2k
0
votes
0
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1.1k
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0
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KOG Enrichment for high Fst values
enrichment population fst kog written 4.4 years ago by Adrian Pelin • 2.2k • updated 4.2 years ago by Biostar ♦♦ 20
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