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3
votes
1
answer
73
views
1
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Phased genotypes data per population
hapmap population genotypes written 5 weeks ago by nastasia • 0 • updated 4 weeks ago by Kevin Blighe ♦ 51k
7
votes
2
answers
1.1k
views
2
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Simulating Bacterial Population
reads population simulate bacterial written 3.4 years ago by Sama • 60 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
277
views
1
answer
meaning of Q_bias ADMIXTURE bootstrap
ancestry population admixture written 9 months ago by samuelandjw • 20 • updated 11 weeks ago by icrojasb • 0
0
votes
1
answer
204
views
1
answer
refine population phased haplotypes by pedigree
pedigree population genotype phasing written 8 months ago by samuelandjw • 20 • updated 3 months ago by bmstudent • 0
0
votes
0
answers
481
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0
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POPGENOME: fasta input
genome R alignment sequence population written 12 months ago by gentiaco • 10 • updated 5 months ago by brianagross • 0
0
votes
0
answers
357
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0
answers
Job: Postdoctoral Position in Population Genomics of an Amazing Animal
genome evolution job population nanopore tunicate written 5 months ago by Charles Plessy • 2.7k
1
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0
answers
197
views
0
answers
Calculate Fst between pairs of population : Tool Used?
R tools population fst snp written 5 months ago by shreyajha • 30
3
votes
1
answer
263
views
1
answer
ADMIXTURE haploid mode does not converge
population admixture X written 8 months ago by samuelandjw • 20
0
votes
0
answers
292
views
0
answers
How to get derived allele count for a list of SNPs
vcf population derived allele written 9 months ago by seta • 1.2k
0
votes
0
answers
221
views
0
answers
Structure Software : Error in assigning memory (not enough space?)
structurre population structure software strauto written 10 months ago by BioRyder • 160
0
votes
1
answer
587
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1
answer
Fst calculation between my own population and 1000 genome populations
population 1000 genome fst written 10 months ago by seta • 1.2k • updated 10 months ago by cetin.m • 30
0
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2
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1.0k
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2
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calculating allele frequency difference or Fst value ?
allele frequency population fst written 13 months ago by seta • 1.2k • updated 11 months ago by paolo002 • 150
0
votes
1
answer
549
views
1
answer
Plotting SNPs with different allele frequency between population
plotting population snp written 11 months ago by seta • 1.2k • updated 11 months ago by Kevin Blighe ♦ 51k
1
vote
2
answers
334
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2
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Find clones in a population using a vcf file.
clones vcf population snp gbs written 12 months ago by felipe-bita • 0
1
vote
1
answer
1.1k
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1
answer
Allele frequency comparison by Fisher's exact test
allele frequency population fisher's exact test written 12 months ago by seta • 1.2k
20
votes
3
answers
1.7k
views
3
answers
Gwas Peak In Only One Population, Why?
gwas population association written 8.5 years ago by Sally • 30 • updated 14 months ago by Biostar ♦♦ 20
11
votes
3
answers
3.4k
views
6 follow
3
answers
How To Get Snps Matrix For Population Genetic Ananlysis From Snps Variant Files
matrix population genetics snp written 8.9 years ago by Jianfengmao • 310 • updated 14 months ago by RamRS ♦ 24k
2
votes
1
answer
2.4k
views
1
answer
Estimating Effective Population Size (Ne) From Rnaseq Data
population next-gen sequencing written 8.4 years ago by Yannick Wurm • 2.3k • updated 15 months ago by Ben Sutherland • 10
2
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1
answer
1.1k
views
1
answer
PCA implementation in plink
population pca plink written 15 months ago by prasundutta87 • 360 • updated 15 months ago by chrchang523 ♦ 5.8k
0
votes
0
answers
936
views
0
answers
f3 statistics tutorial or ppt
popul population genetics written 16 months ago by Genotepes • 950
1
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0
answers
564
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0
answers
Best program for population structure analyses of whole genome SNP data of many individuals
genome software population sequencing written 17 months ago by rc16955 • 60
2
votes
0
answers
937
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0
answers
Plot linkage disequilibrium along chromosome
linkage R next-gen population chromosome written 20 months ago by Roy • 10 • updated 19 months ago by Biostar ♦♦ 20
4
votes
1
answer
1.6k
views
1
answer
Phasing without a reference panel
hapmap population genotype phasing written 21 months ago by chadapohn.chaosrikul • 0 • updated 21 months ago by Wietje • 210
5
votes
2
answers
666
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2
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ExAC includes WES of phenotyped population
population exac snp written 22 months ago by CY • 420 • updated 22 months ago by Chris Miller ♦ 21k
0
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1
answer
1.0k
views
1
answer
Finding SNPs in population data: help with pipeline
genome population snp pileup written 2.6 years ago by Alex • 0 • updated 23 months ago by Pierre Lindenbaum ♦ 124k
9
votes
1
answer
4.8k
views
6 follow
1
answer
Why 4Ne Rather Than 2Ne?
population written 7.7 years ago by Lds • 390 • updated 2.3 years ago by Biostar ♦♦ 20
4
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0
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1.1k
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0
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Looking for Population Genetics Simulation Software
genome simulation population written 3.1 years ago by xescape • 20 • updated 2.5 years ago by Biostar ♦♦ 20
2
votes
0
answers
1.5k
views
6 follow
0
answers
imputation only choose one population as reference panel
shapeit impute2 population gwas written 2.7 years ago by Peter Chung • 80 • updated 2.5 years ago by ShirleyDai • 40
1
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0
answers
987
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0
answers
multi vcf population genomics analysis
vcf population written 2.8 years ago by guillaume.rbt • 730
0
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0
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1.4k
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0
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Population statistics VCF file format for Cartagenia?
vcf population format statistics written 3.1 years ago by hhj • 0 • updated 3.1 years ago by geek_y ♦ 10.0k
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