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sra toolkit prefetch: path not found while resolving tree within virtual file system module

prefetch sra toolkit rna-seq written 12 months ago by gilbo • 20 • updated 9 months ago by Mike Vermeulen • 0

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1.1k

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why fastq-dump doesn`t work?

sra prefetch fastq-dump written 10 months ago by star • 190 • updated 10 months ago by ATpoint ♦ 26k

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1.9k

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SRA Toolkit Prefetch error when downloading dbGaP SRR files

ncbi prefetch sra toolkit dbgap rna-seq written 2.0 years ago by Anthony.Knox • 50

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3.5k

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Cannot find downloaded files from SRA toolkit (prefetch)

sra toolkit prefetch written 3.1 years ago by Lina F • 160

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5.8k

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Downloading SRA data by prefetch command

sra prefetch written 4.1 years ago by hasani.iut6 • 40 • updated 4.1 years ago by Antonio R. Franco • 4.2k

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Recent Replies

C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by vkkodali • 1.5k
If you can run your `esearch` query again, you can pipe it to `efetch -format acc` to get the acc...
C: VCF filtering by depth by ja4123 • 0
How to filter AF in vcf file with that way? There is a KeyError.
C: Where does Prokka take EC numbers from? by Mensur Dlakic • 2.4k
The meaning of EC numbers is explained at [**ExPASy**][1], specifically in [**this file**][2]. Pr...
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This post looks helpful. https://www.biostars.org/p/48502/
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What do you mean by "how much each cluster contributes to the total amount of cells"? Just the pe...
A: Seurat QC Metrics For Each Cluster and Cluster Composition by igor ♦ 8.9k
All of the QC metrics and cluster assignments are stored in `seurat_obj@meta.data`, which is a st...
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As you have already discovered, there are a few different ways to get the 3D style, each with the...
C: Correlation of two ChIP-seq signals? by i.sudbery ♦ 6.3k
What about exons/introns - is some correlation coming from the signal being stronger in exons?
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For germline cnv calling by using capture panel data, i recommend CoNVaDING
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I don't know precisely what you mean by "backbone", but you can readily measer degree, betweeenne...
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OH that makes sense--thanks for clarifying :) I will try that and hopefully there aren't so many ...
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Today I understand the use of j-i +1. Without this the initialisation doesn't make sense. I app...

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