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Job: Now Hiring! UCSC Genomics Institute Project Manager

project management job genomics written 5 weeks ago by genomicshr • 20

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Consistency checks on results files?

project management best practice written 14 months ago by russhh ♦ 5.2k • updated 14 months ago by Devon Ryan ♦ 94k

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498

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Job: UCSC Genomics Institute seeking External Collaborations Project Manager!

collaboration project management job genomics ucsc written 17 months ago by genomicshr • 20

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Job: Scientific Research Analysts / Science Project Manager

biosciences research analyst job project management written 2.5 years ago by jacqueline.fabius • 0

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Job: Sr. Project Coordinator (Broad Institute)

project management job project coordinator written 4.0 years ago by jzhao • 30 • updated 4.0 years ago by Giovanni M Dall'Olio ♦ 27k

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News: Project Management Tools for Bioinformaticians and Service Providers

quotation software project management lims news written 5.3 years ago by support • 630

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Recent Replies

C: Exract variable protein sequence from multiple seqece alinment? by genomax ♦ 80k
https://www.biostars.org/p/326765/#326766
A: Ensembl and Gene Prediction Tools output CDS' not divisible by 3 by ATpoint ♦ 32k
Probably this is a 1-based file so you will need to add +1 to the result which makes it 1143/3=38...
A: Ensembl and Gene Prediction Tools output CDS' not divisible by 3 by Juke-34 • 3.7k
GFF is one-based coordinate. See here [https://www.biostars.org/p/84686/][1]. So it is 1828 - 68...
C: MD5 not the same between contig and reference; both Unified Genotyper and Haplot by igor ♦ 9.9k
You can also try checking the BAM file header (`samtools view -H file.bam`). It may have the file...
C: GTF/GFF for non-coding RNA by igor ♦ 9.9k
The GTF you have is not from GENCODE or Ensembl. GTF files from other sources may not have a `gen...
A: How to choose between --cut_ga, --cut_tc, and --cut_nc in hmmsearch? (hmmer) by Mensur Dlakic • 4.2k
As explained above, none of these options will matter unless your HMM has the cutoffs set. The ap...
C: array jobs accessing one binary in population genetics software by prasundutta87 • 360
Thanks @ATpoint..that's reassuring..the program is in generally quite slow and also hogs a lot of...
C: SRA file identifiers for use with sra-toolkit by Arup Ghosh ♦ 2.3k
Not sure why it didn't work for you. [user@desktop ~]$ prefetch DRX013093 2020-04-04T19:...
C: A3 count (count of A occurring in 3rd codon position) in multifasta file by cschu181 • 2.2k
do [DNA[start:start+3] for start in range(0, len(DNA) - 3, 3)] instead i.e. enclose the w...
A: array jobs accessing one binary in population genetics software by ATpoint ♦ 32k
That will work just fine, don't worry. I/O bottlenecks can happen if many jobs start reading or w...
C: Dealing with only 2 samples in RNA-SEQ by ATpoint ♦ 32k
> edgeR is primarily intended for use with data including biological replication. Nevertheless...
C: A3 count (count of A occurring in 3rd codon position) in multifasta file by annushreekurmi • 0
Thanks for the reply. But it does not work. I also tried the following: DNA="ATGCCCGTG" start = 0...

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