psi-blast Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: psi-blast • reset

or Classic search

votes

answers

150

views

answers

Warning when running PSI-BLAST

psi-blast written 6 months ago by Ming • 30

votes

answers

333

views

answers

GPU-blast -> write PSI-blast yourself [help me understand the algoritm]

algoritm protein gpu-blast blast psi-blast written 9 months ago by Xylanaser • 20

votes

answer

262

views

answer

Memsat-SVM: error running PSI-BLAST

software error memsat-svm psi-blast written 10 months ago by Thomas B. • 10

votes

answers

1.4k

views

answers

[Blast] PSI-BLAST with multiple-seperate output PSSM file

pssm psi-blast blast written 2.1 years ago by phanhuykinh1 • 0

votes

answers

1.5k

views

answers

help with installation of psipred

ncbi toolkit psipred install psi-blast written 3.3 years ago by pingEde • 30 • updated 3.1 years ago by daniel.buchan • 0

votes

answers

780

views

answers

Psi-blast result parsing problem

psi-blast blast parsing written 3.3 years ago by Xylanaser • 20

votes

answers

1.2k

views

answers

How to apply psi-blast for to find pssm matrix for multiple protein sequences ?

proteinsequences psi-blast pssm matrix written 3.5 years ago by puja.patel • 0

votes

answers

1.1k

views

answers

Psi-BLAST error : During COG analysis

psi-blast blast cog written 3.7 years ago by Mohit • 0

votes

answers

1.2k

views

answers

Running PSI-BLAST Against Multiple Queries

blast sequence protein psi-blast protein-seq written 3.7 years ago by Xylanaser • 20 • updated 3.7 years ago by pld ♦ 4.8k

votes

answers

1.1k

views

answers

Get a CSI-BLAST PSSM

pssm cs-blast protein psi-blast written 4.2 years ago by ddofer • 30

votes

answers

1.5k

views

answers

E-Value Threshold Analysis

fasta phmmer e-value psi-blast blast written 4.9 years ago by caribsim • 0

Recent Votes

Recent Locations • All »

France/Nantes/Institut du Thorax - INSERM UMR1087, 2 minutes ago

Recent Awards • All »

Teacher to WouterDeCoster ♦ 40k
Teacher to genomax ♦ 69k
Teacher to Prakash • 1.3k
Scholar to Prakash • 1.3k
Teacher to Kevin Blighe ♦ 45k
Scholar to Kevin Blighe ♦ 45k

Recent Replies

C: Calculate disease risk based on the genoytype of some SNPs by miguelcarnero • 0
I though that's what polygenic risk score or GWAS calculate... And if the risk of a SNP for a dis...
C: Calculate disease risk based on the genoytype of some SNPs by miguelcarnero • 0
I'm a beginner, but I have tried with Plink. The files I have are those generated with Plink, bot...
C: aligning multiple files to the same genome using star by Fabio Marroni • 2.3k
Did you try following the solution proposed in the error message? (ulimit -v 31652814154)
A: Get DrugBank data with Python by mohfcis • 20
Hi, you can use dbparser package https://github.com/Dainanahan/dbparser, it is designed to parse ...
A: How to extract specific columns from Drugbank xml file by mohfcis • 20
Hi, You can use dbparser package https://github.com/Dainanahan/dbparser, it is designed to parse ...
A: Explanation for kmer enrichment after skewer trimming of the RNA-seq reads by hongshan.jiang • 0
In your case, there is NO need to specify -m or -l option! Adapter: -m, --mode trimming mode; ...
C: Download CAZy database by h.mon ♦ 26k
https://www.biostars.org/p/389279/
C: Too many fails converting gene SYMBOL to ENTREZID by MatthewP • 180
Sorry I didn't paste all my code here. I will try `biomaRt` later. Thanks Kevin.
C: Merge DEseq and Cufflinks outputs by Morris_Chair • 120
I did compared DESeq2 vs Tuxedo suit, (In general bioinformaticians suggest to don't use use cuff...
C: Cazy Database Sequences Download by 724303223 • 0
I found out that dbCAN cannot be accessed recently,and there is nowhere to download CAZymes data...
C: Download CAZy database by 724303223 • 0
I found out that dbCAN cannot be accessed recently,and there is nowhere to download CAZymes datab...
C: Calculate disease risk based on the genoytype of some SNPs by theoharis • 0
Imputing the combined risk from multiple genotypes based on published data on individual genotype...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 631 users visited in the last hour