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Recent Replies
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A: Bash One-liners collection on Github by
stephannie.baker8 • 0
I never thought github can be used like this way also. great job.
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C: same experiment, different values with my heat map. Any help? by
stephannie.baker8 • 0
Thank you so much it was a great help. was facing the same
-
A: Keeping only common variants in the merged VCF file by
husensofteng • 70
I am not sure if I understand the question correctly, but it sounds as a line filtering issue to ...
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A: What are the best tools for visualizing DNA methylation result? by
xieshaojun0621 • 110
You can also try `ViewBS`: https://github.com/xie186/ViewBS
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C: How does bbduk calculate it's memory requirements? by
Lina F • 150
I upped the memory to 8 Gb for the docker container and it worked! bbduk used **-Xmx1267m -Xms126...
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C: interesting behavior with grep by
Michael R. Crusoe • 1.4k
From the grep manual page > Exit Status: 0 if a line is selected, 1 if no lines were selected...
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C: BWA mapping to multiple reference genome by
Carambakaracho • 1.1k
Just to make sure you won't go that path, I've done that years ago when bowtie2 wasn't able to ha...
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A: Keeping only common variants in the merged VCF file by
harold.smith.tarheel • 4.3k
Two options: 1) use [BEDtools 'intersect'][1] for the two original VCFs. 2) use [VCFtools 'vcf-...
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C: Assemblers that work with Ion Torrent reads by
gustavojorge080 • 0
I need five assemblers for an academic job. And it's very difficult to find assemblers for IonTor...
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C: same experiment, different values with my heat map. Any help? by
ATpoint ♦ 16k
I would not switch around as there should be consistency. Use what you prefer (or `vst` if you ha...
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C: Error in Gviz BiomartGeneRegionTrack by
SMK • 380
Hi [codezy][1], I use your codes and they work for me: ![381423][2] Can you provide the result...
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C: How does bbduk calculate it's memory requirements? by
genomax ♦ 67k
Based on the info above you have assigned only 2GB RAM to this VM. Is it possible to use more? If...
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