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How to run PSSPred on multple sequences

psspred sequence peptide written 7 months ago by Tom • 20 • updated 7 months ago by Pierre Lindenbaum ♦ 114k

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PSSPred Alignment Alignment

i-tasser psspred alignment written 3.7 years ago by virpatel3 • 20

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Recent Replies

C: May I use numreads for doing DGE after quantifying by Salmon by lkianmehr • 30
but I taught that tximport should be used just for summarizing transcript_id to gene_id
C: awk and sed in bash script and no output by cpad0112 • 9.9k
@ https://www.biostars.org/u/41458/ 1. Make a new directory 2. Copy all the files in the new d...
C: Is there some tools can convert a table file or a csv file in to a vcf file? by Zeason • 0
i just find the tools i want couple hours ago thanks a lot
C: awk and sed in bash script and no output by cpad0112 • 9.9k
That is because OP is using *.txt in loop and doesn't want output with .txt for obvious reasons. ...
C: log vs square-root transformation by jomo018 • 430
Log transform symmetrizes under-expression and over-expression representations.
C: awk and sed in bash script and no output by bk11 • 30
It worked very nicely though.
C: awk and sed in bash script and no output by cpad0112 • 9.9k
try this: for i in *.txt; do awk -F'\t' '{print $16}' $i | sed '1d' | tr -d '\r' > $i"_ge...
C: Python script for generating Genomic windows of intervals 50kbp for Human refere by nk778 • 0
Thank you once again! Your suggestions really helped!
C: awk and sed in bash script and no output by bk11 • 30
I tried sending the result to .txt file but also it did not work.
A: Determination of hub genes in PPI network by h.mon ♦ 21k
Hub genes are highly interconnected genes. There are several methods and approaches for measuring...
C: log vs square-root transformation by ATpoint ♦ 9.2k
I guess log transformation more efficiently takes care of large differences in read counts. ![e...
C: Extract start coordinate from read 1 and end coordinate from read 2 of paired en by cpad0112 • 9.9k
probably length of the read and strand (+ and -) https://www.biostars.org/u/50400/

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