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Recent Replies
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C: Where can I find CCLE RNAseq BAM files? by
igor ♦ 8.3k
Is that mentioned on their website somewhere?
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merge the vcf using , for example, 'bcftools merge'. Then filter using, for example, 'gatk Selec...
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Hello https://www.biostars.org/u/58200/ , you seems to be puzzled by what information all the di...
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It will be stored in meta data. You can check by `head(immune.combined@meta.data)` If you want ...
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BioinformaticsLad • 140
You bring up a good point about diversity and sequencing depth. I sequenced 30Gbps for each of my...
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thank you. That gives me genomic positions. How about to get cds start txstart gene name details ...
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Hi Vitis, I have confirmed the length of FASTA entries. The sequence length is shorter after mask...
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Thank you Dr. Tom for this insightful suggestion and comments
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genomax ♦ 71k
You could simply `blat` the sequences [at UCSC][1] if your genome is available there. [1]: h...
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Hello elienesantossilva09! It appears that your post has been cross-posted to another site: Cros...
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You can use the samtools markdup command to remove duplicates. This is different from filtering b...
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Instead of: $ bedops -m out.bed | bedmap --echo-map --exact - out.bed Try: $ bedops -m...
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