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Pyranges: obtaining sets of overlaps or overlap pairs

list overlaps pyranges overlaps overlap pairs written 7 days ago by Bosberg • 30 • updated 7 days ago by Alex Reynolds ♦ 31k

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Pyranges: operate on just metadata columns

pyranges column selection pandas written 12 days ago by Bosberg • 30

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Popular Question to krushnach80 • 900
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Appreciated to Kevin Blighe ♦ 71k
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Recent Replies

C: Merge bigwig Files with different intervals by Carlo Yague ♦ 5.7k
oh yes you are right
C: Reading multiple txt files and perform Two Sample Mendelian Randomization in R by mscpythonstudy • 0
Thank you Ram. Agree lapply will be better and faster. Usage of read_exposure_data( filename, ...
C: Reading multiple txt files and perform Two Sample Mendelian Randomization in R by mscpythonstudy • 0
Thank you, Sam. I tried your method. I think it should work. However, under the package of TwoSa...
C: PCAtools: everything Principal Components Analysis by krushnach80 • 900
"showLoadings" this shows the magnitude of contribution of those features to the pca in terms of ...
C: How to use Rsamtools to extracting reads map into single chromosome from BAM fil by changxu.fan • 50
I agree. The lack of bam export functionality in Rsamtools is frustrating and converting from sam...
C: renaming flow frames in a flowSet using flowCore by Kevin Blighe ♦ 71k
Have you taken a look at the `pData()` slot for fs? Otherwise, try running `str(fs)` to see how t...
C: Connecting two PDB structures in Pymol by Hansen_869 • 20
Doing so will just put them on top of each other, as they have almost the same coordinates. I nee...
C: Bacterial RNA-SEQ - Quality Control by swbarnes2 ♦ 9.6k
What would you do with the adapter sequence? Again, are you **absolutely sure** that deviation f...
C: Merge bigwig Files with different intervals by ATpoint ♦ 46k
But that only goes for two files, does it?
A: where can I found ecab3.0 SNP annotation? by mmunsanbioinfo • 0
#Descargar base de datos EquCab3 java -jar $HOME/snpEff/snpEff.jar download EquCab3.0.99...
C: CLIP enrichment analysis by noahhelton98 • 0
Thanks so much I'll take a look! I appreciate it tons.
C: Merge bigwig Files with different intervals by Carlo Yague ♦ 5.7k
[Deeptools bigwigcompare][1] allows many different operations (log2, ratio, subtract, add, mean, ...

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