Showing: pysamreset
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pysam: filtering reads based on flag
python samtools pysam hts written 2.1 years ago by QVINTVS_FABIVS_MAXIMVS1.9k • updated 4 weeks ago by Biostar ♦♦ 20
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181
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pysam truncated file error
python samtools pysam written 7 weeks ago by pupatel0
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171
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Pysam changes bam format when printing
pysam written 9 weeks ago by grant.hovhannisyan120 • updated 9 weeks ago by i.sudbery1.4k
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202
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26
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 16 months ago by John11k
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291
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3
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350
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Necessary to close pysam.AlignmentFile?
python bam pysam written 5 months ago by AlchemistMoz10 • updated 5 months ago by Devon Ryan70k
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5
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349
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466
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Filter low quality reads in bam files
python next-gen pysam written 8 months ago by ammarsabir1550 • updated 8 months ago by Brian Bushnell13k
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357
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Error Filtering BAM file based on mapping qualities in python's pysam
next-gen alignment pysam written 8 months ago by ammarsabir1550 • updated 8 months ago by John11k
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296
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For loop that continues finding matches in a file
python loop fastq pysam written 8 months ago by yarmda0 • updated 8 months ago by WouterDeCoster20k
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341
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pysam fetch with partial reference name
pysam python fetch bamfile substring written 9 months ago by yarmda0 • updated 9 months ago by Devon Ryan70k
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350
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332
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4
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Pysam under pypy?
python pysam pypy written 2.5 years ago by John11k • updated 11 months ago by Eric T.1.8k
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660
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396
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let me know examples of "pysam.view()" for counting BAM.
samtools view pysam written 13 months ago by mink2mink20 • updated 13 months ago by pld4.6k
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950
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6
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466
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Reads in BAM file overlapping coordinates
reads bam pysam snp written 15 months ago by madhavkurup19910 • updated 15 months ago by Jorge Amigo9.8k
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3
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Pysam (python) problem parsing BAM reference id
python bam sam pysam written 16 months ago by liorglic10 • updated 16 months ago by Matt Shirley7.7k
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Mate pair positions using pysam
python mate pair pysam written 2.0 years ago by QVINTVS_FABIVS_MAXIMVS1.9k • updated 17 months ago by horticulturesh0
2
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782
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obtaining a pileup with read names from a bam alignment
alignment next-gen samtools pysam mpileup written 17 months ago by bernardo196310 • updated 17 months ago by Devon Ryan70k
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969
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Problem iterating through BAM file using pysam
python sam bam forloop pysam written 18 months ago by c9r1y0 • updated 18 months ago by Matt Shirley7.7k
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