Showing: pysamreset
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Pysam changes bam format when printing
pysam written 13 days ago by grant.hovhannisyan20 • updated 13 days ago by i.sudbery1.3k
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 14 months ago by John11k
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Necessary to close pysam.AlignmentFile?
python bam pysam written 4 months ago by AlchemistMoz10 • updated 4 months ago by Devon Ryan68k
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Filter low quality reads in bam files
python next-gen pysam written 6 months ago by ammarsabir1540 • updated 6 months ago by Brian Bushnell12k
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Error Filtering BAM file based on mapping qualities in python's pysam
next-gen alignment pysam written 6 months ago by ammarsabir1540 • updated 6 months ago by John11k
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For loop that continues finding matches in a file
python loop fastq pysam written 6 months ago by yarmda0 • updated 6 months ago by WouterDeCoster19k
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pysam fetch with partial reference name
pysam python fetch bamfile substring written 7 months ago by yarmda0 • updated 7 months ago by Devon Ryan68k
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Pysam under pypy?
python pysam pypy written 2.3 years ago by John11k • updated 10 months ago by Eric T.1.7k
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let me know examples of "pysam.view()" for counting BAM.
samtools view pysam written 11 months ago by mink2mink20 • updated 11 months ago by pld4.5k
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Reads in BAM file overlapping coordinates
reads bam pysam snp written 13 months ago by madhavkurup19910 • updated 13 months ago by Jorge Amigo9.7k
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Pysam (python) problem parsing BAM reference id
python bam sam pysam written 14 months ago by liorglic10 • updated 14 months ago by Matt Shirley7.3k
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Mate pair positions using pysam
python mate pair pysam written 23 months ago by QVINTVS_FABIVS_MAXIMVS1.9k • updated 15 months ago by horticulturesh0
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obtaining a pileup with read names from a bam alignment
alignment next-gen samtools pysam mpileup written 16 months ago by bernardo196310 • updated 16 months ago by Devon Ryan68k
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Problem iterating through BAM file using pysam
python sam bam forloop pysam written 16 months ago by c9r1y0 • updated 16 months ago by Matt Shirley7.3k
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Truncating BAM Files
bam samtools sam rna-seq pysam written 19 months ago by JameB110 • updated 17 months ago by Biostar ♦♦ 20
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How to cache reads?
genome alignment sequence samtools pysam written 17 months ago by everrove0 • updated 17 months ago by Manuel Landesfeind1.1k
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