Showing: pysamreset
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pysam difference between template_length and reference_length
genome next-gen pysam written 5 weeks ago by Medhat8.0k • updated 5 weeks ago by Devon Ryan86k
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148
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pysam: How do I type an AlignedSegment in Cython?
cython pysam written 7 weeks ago by Click downvote650 • updated 7 weeks ago by Biostar ♦♦ 20
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144
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How to ignore truncation error with PySam?
python sam alignment mapping pysam written 8 weeks ago by O.rka70 • updated 7 weeks ago by Biostar ♦♦ 20
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153
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appropriate way to use pysam.depth
python pysam written 10 weeks ago by Medhat8.0k
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Problem iterating through BAM file using pysam
python sam bam forloop pysam written 2.8 years ago by c9r1y0 • updated 3 months ago by RamRS19k
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cannot import pysam. Module has no attribute error
samtools api python pysam written 3.4 years ago by QVINTVS_FABIVS_MAXIMVS2.2k • updated 3 months ago by RamRS19k
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pysam truncated file error
python samtools pysam written 17 months ago by pupatel0 • updated 3 months ago by Biostar ♦♦ 20
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5 follow
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output differents value between samtools depth and pysam
python pysam written 6 months ago by electronsource7510 • updated 6 months ago by Devon Ryan86k
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7 follow
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python script error: ImportError: No module named pysam
.py overlapsignature pysam pythonscript written 7 months ago by jaqx00840 • updated 7 months ago by Carlos Borroto1.8k
3
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507
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2
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Pysam fetch for records not exists in VCF files
pysam fetch written 2.2 years ago by always_learning930 • updated 7 months ago by Vasisht150
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Pysam read reference positions and sequence do not match
samtools pysam pileup tview written 14 months ago by rlorigro0 • updated 13 months ago by Biostar ♦♦ 20
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Error in pysam: trying to read BAM file using CYTHON
next-gen alignment pysam written 14 months ago by ammarsabir1550 • updated 14 months ago by Devon Ryan86k
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pysam not plotting exact values for coverage
alignment pysam coverage written 15 months ago by ammarsabir1550 • updated 15 months ago by Devon Ryan86k
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Error during htseq-count
htseq-count star pysam written 15 months ago by baffiak190210
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1
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pysam: filtering reads based on flag
python samtools pysam hts written 3.4 years ago by QVINTVS_FABIVS_MAXIMVS2.2k • updated 17 months ago by Biostar ♦♦ 20
2
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487
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1
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Extract R2F1 reads
samtools pysam structural variation written 17 months ago by IP500
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Pysam changes bam format when printing
pysam written 18 months ago by grant.hovhannisyan1.3k • updated 18 months ago by i.sudbery2.8k
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 2.7 years ago by John12k
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