Showing: pysamreset
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Necessary to close pysam.AlignmentFile?
python bam pysam written 4 weeks ago by AlchemistMoz10 • updated 4 weeks ago by Devon Ryan63k
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Filter low quality reads in bam files
python next-gen pysam written 3 months ago by ammarsabir1530 • updated 3 months ago by Brian Bushnell10k
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Error Filtering BAM file based on mapping qualities in python's pysam
next-gen alignment pysam written 3 months ago by ammarsabir1530 • updated 3 months ago by John10k
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For loop that continues finding matches in a file
python loop fastq pysam written 3 months ago by yarmda0 • updated 3 months ago by WouterDeCoster14k
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pysam fetch with partial reference name
pysam python fetch bamfile substring written 4 months ago by yarmda0 • updated 4 months ago by Devon Ryan63k
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Pysam under pypy?
python pysam pypy written 2.1 years ago by John10k • updated 7 months ago by Etal1.6k
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 11 months ago by John10k • updated 7 months ago by 5318008240
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let me know examples of "pysam.view()" for counting BAM.
samtools view pysam written 8 months ago by mink2mink20 • updated 8 months ago by pld4.4k
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Reads in BAM file overlapping coordinates
reads bam pysam snp written 10 months ago by madhavkurup19910 • updated 10 months ago by Jorge Amigo9.5k
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Pysam (python) problem parsing BAM reference id
python bam sam pysam written 11 months ago by liorglic10 • updated 11 months ago by Matt Shirley7.1k
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Mate pair positions using pysam
python mate pair pysam written 19 months ago by QVINTVS_FABIVS_MAXIMVS1.6k • updated 12 months ago by horticulturesh0
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obtaining a pileup with read names from a bam alignment
alignment next-gen samtools pysam mpileup written 12 months ago by bernardo196310 • updated 12 months ago by Devon Ryan63k
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Problem iterating through BAM file using pysam
python sam bam forloop pysam written 13 months ago by c9r1y0 • updated 13 months ago by Matt Shirley7.1k
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Truncating BAM Files
bam samtools sam rna-seq pysam written 16 months ago by JameB110 • updated 14 months ago by Biostar ♦♦ 10
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How to cache reads?
genome alignment sequence samtools pysam written 14 months ago by everrove0 • updated 14 months ago by Manuel Landesfeind940
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understanding pysam pileup()
pysam pileup written 15 months ago by Goutham Atla7.0k
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Reading CRAM files in pysam
python htslib samtools pysam cram written 15 months ago by QVINTVS_FABIVS_MAXIMVS1.6k • updated 15 months ago by duxan30
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cannot import pysam. Module has no attribute error
samtools api python pysam written 20 months ago by QVINTVS_FABIVS_MAXIMVS1.6k • updated 15 months ago by John10k
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