Showing: pysamreset
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Error in pysam: trying to read BAM file using CYTHON
next-gen alignment pysam written 15 days ago by ammarsabir1550 • updated 15 days ago by Devon Ryan71k
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150
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pysam not plotting exact values for coverage
alignment pysam coverage written 6 weeks ago by ammarsabir1550 • updated 6 weeks ago by Devon Ryan71k
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pysam: filtering reads based on flag
python samtools pysam hts written 2.3 years ago by QVINTVS_FABIVS_MAXIMVS2.0k • updated 3 months ago by Biostar ♦♦ 20
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225
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Extract R2F1 reads
samtools pysam structural variation written 3 months ago by IP350
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233
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pysam truncated file error
python samtools pysam written 3 months ago by pupatel0
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219
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Pysam changes bam format when printing
pysam written 4 months ago by grant.hovhannisyan260 • updated 4 months ago by i.sudbery1.6k
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 18 months ago by John11k
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Necessary to close pysam.AlignmentFile?
python bam pysam written 8 months ago by AlchemistMoz10 • updated 8 months ago by Devon Ryan71k
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Filter low quality reads in bam files
python next-gen pysam written 10 months ago by ammarsabir1550 • updated 10 months ago by Brian Bushnell14k
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Error Filtering BAM file based on mapping qualities in python's pysam
next-gen alignment pysam written 10 months ago by ammarsabir1550 • updated 10 months ago by John11k
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For loop that continues finding matches in a file
python loop fastq pysam written 10 months ago by yarmda0 • updated 10 months ago by WouterDeCoster22k
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pysam fetch with partial reference name
pysam python fetch bamfile substring written 11 months ago by yarmda0 • updated 11 months ago by Devon Ryan71k
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Pysam under pypy?
python pysam pypy written 2.7 years ago by John11k • updated 14 months ago by Eric T.1.9k
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let me know examples of "pysam.view()" for counting BAM.
samtools view pysam written 15 months ago by mink2mink20 • updated 15 months ago by pld4.6k
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Reads in BAM file overlapping coordinates
reads bam pysam snp written 17 months ago by madhavkurup19910 • updated 17 months ago by Jorge Amigo9.9k
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