Showing: pysamreset
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15
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Pysam read reference positions and sequence do not match
samtools pysam pileup tview written 3 months ago by rlorigro0 • updated 11 weeks ago by Biostar ♦♦ 20
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0
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249
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0
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0
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1
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201
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1
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Error in pysam: trying to read BAM file using CYTHON
next-gen alignment pysam written 3 months ago by ammarsabir1550 • updated 3 months ago by Devon Ryan74k
0
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1
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239
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1
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pysam not plotting exact values for coverage
alignment pysam coverage written 4 months ago by ammarsabir1550 • updated 4 months ago by Devon Ryan74k
1
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0
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315
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Error during htseq-count
htseq-count star pysam written 4 months ago by baffiak190210
6
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1
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1.6k
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1
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pysam: filtering reads based on flag
python samtools pysam hts written 2.5 years ago by QVINTVS_FABIVS_MAXIMVS2.0k • updated 6 months ago by Biostar ♦♦ 20
2
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1
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279
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1
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Extract R2F1 reads
samtools pysam structural variation written 6 months ago by IP350
1
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0
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353
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0
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pysam truncated file error
python samtools pysam written 6 months ago by pupatel0
11
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2
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306
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2
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Pysam changes bam format when printing
pysam written 7 months ago by grant.hovhannisyan340 • updated 7 months ago by i.sudbery1.8k
2
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1
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363
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1
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34
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4
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3.7k
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4
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 21 months ago by John12k
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477
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0
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3
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1
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691
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1
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How to filter/view reads mapped to multiple locations using samtools or pysam
python samtools pysam written 10 months ago by AlchemistMoz10 • updated 10 months ago by Tom_L250
2
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1
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266
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1
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Necessary to close pysam.AlignmentFile?
python bam pysam written 11 months ago by AlchemistMoz10 • updated 11 months ago by Devon Ryan74k
0
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427
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0
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5
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2
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641
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2
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Pysam Fetching specified regions
python pysam written 11 months ago by AlchemistMoz10
3
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1
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529
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1
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0
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1
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731
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Filter low quality reads in bam files
python next-gen pysam written 13 months ago by ammarsabir1550 • updated 13 months ago by Brian Bushnell15k
2
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1
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501
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1
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Error Filtering BAM file based on mapping qualities in python's pysam
next-gen alignment pysam written 13 months ago by ammarsabir1550 • updated 13 months ago by John12k
0
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1
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372
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1
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For loop that continues finding matches in a file
python loop fastq pysam written 13 months ago by yarmda0 • updated 13 months ago by WouterDeCoster24k
1
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1
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524
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1
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pysam fetch with partial reference name
pysam python fetch bamfile substring written 14 months ago by yarmda0 • updated 14 months ago by Devon Ryan74k
2
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1
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481
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1
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3
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522
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1
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458
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0
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4
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2
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1.1k
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Pysam under pypy?
python pysam pypy written 2.9 years ago by John12k • updated 17 months ago by Eric T.1.9k
4
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715
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0
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3
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2
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912
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2
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1
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1
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503
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let me know examples of "pysam.view()" for counting BAM.
samtools view pysam written 18 months ago by mink2mink20 • updated 18 months ago by pld4.6k
6
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1
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566
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1
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Reads in BAM file overlapping coordinates
reads bam pysam snp written 20 months ago by madhavkurup19910 • updated 20 months ago by Jorge Amigo10k
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