Showing: pysamreset
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2
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67
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Necessary to close pysam.AlignmentFile?
python bam pysam written 5 days ago by AlchemistMoz10 • updated 5 days ago by Devon Ryan62k
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66
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5
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111
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3
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229
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0
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210
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Filter low quality reads in bam files
python next-gen pysam written 11 weeks ago by ammarsabir1530 • updated 11 weeks ago by Brian Bushnell9.8k
2
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207
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Error Filtering BAM file based on mapping qualities in python's pysam
next-gen alignment pysam written 11 weeks ago by ammarsabir1530 • updated 11 weeks ago by John10k
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197
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For loop that continues finding matches in a file
python loop fastq pysam written 11 weeks ago by yarmda0 • updated 11 weeks ago by WouterDeCoster13k
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149
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1
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pysam fetch with partial reference name
pysam python fetch bamfile substring written 3 months ago by yarmda0 • updated 3 months ago by Devon Ryan62k
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213
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3
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209
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204
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4
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813
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Pysam under pypy?
python pysam pypy written 2.0 years ago by John10k • updated 6 months ago by Etal1.4k
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3
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 10 months ago by John10k • updated 6 months ago by 5318008240
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274
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3
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408
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248
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let me know examples of "pysam.view()" for counting BAM.
samtools view pysam written 7 months ago by mink2mink20 • updated 7 months ago by pld4.4k
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604
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6
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340
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Reads in BAM file overlapping coordinates
reads bam pysam snp written 9 months ago by madhavkurup19910 • updated 9 months ago by Jorge Amigo9.4k
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296
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3
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718
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Pysam (python) problem parsing BAM reference id
python bam sam pysam written 10 months ago by liorglic10 • updated 10 months ago by Matt Shirley6.9k
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785
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Mate pair positions using pysam
python mate pair pysam written 19 months ago by QVINTVS_FABIVS_MAXIMVS1.5k • updated 11 months ago by horticulturesh0
2
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552
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obtaining a pileup with read names from a bam alignment
alignment next-gen samtools pysam mpileup written 11 months ago by bernardo196310 • updated 11 months ago by Devon Ryan62k
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636
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Problem iterating through BAM file using pysam
python sam bam forloop pysam written 12 months ago by c9r1y0 • updated 12 months ago by Matt Shirley6.9k
5
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462
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Truncating BAM Files
bam samtools sam rna-seq pysam written 15 months ago by JameB110 • updated 13 months ago by Biostar ♦♦ 10
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469
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How to cache reads?
genome alignment sequence samtools pysam written 13 months ago by everrove0 • updated 13 months ago by Manuel Landesfeind930
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1.0k
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1
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understanding pysam pileup()
pysam pileup written 14 months ago by Goutham Atla6.9k
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695
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Reading CRAM files in pysam
python htslib samtools pysam cram written 14 months ago by QVINTVS_FABIVS_MAXIMVS1.5k • updated 14 months ago by duxan30
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2.9k
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cannot import pysam. Module has no attribute error
samtools api python pysam written 19 months ago by QVINTVS_FABIVS_MAXIMVS1.5k • updated 14 months ago by John10k
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660
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1
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Phred Score/Base quality score in Pysam
bam file phred alignment pysam sequencing written 17 months ago by Lylthera0 • updated 17 months ago by Wocka320
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1.0k
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Pysam cannot find index
samtools pysam written 19 months ago by eric.kern1370
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