Showing: pysamreset
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How to ignore truncation error with PySam?
python sam alignment mapping pysam written 4 days ago by O.rka60 • updated 1 day ago by Biostar ♦♦ 20
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appropriate way to use pysam.depth
python pysam written 18 days ago by Medhat7.9k
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Problem iterating through BAM file using pysam
python sam bam forloop pysam written 2.7 years ago by c9r1y0 • updated 5 weeks ago by RamRS18k
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cannot import pysam. Module has no attribute error
samtools api python pysam written 3.3 years ago by QVINTVS_FABIVS_MAXIMVS2.1k • updated 6 weeks ago by RamRS18k
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pysam truncated file error
python samtools pysam written 16 months ago by pupatel0 • updated 8 weeks ago by Biostar ♦♦ 20
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output differents value between samtools depth and pysam
python pysam written 5 months ago by electronsource7510 • updated 5 months ago by Devon Ryan85k
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python script error: ImportError: No module named pysam
.py overlapsignature pysam pythonscript written 5 months ago by jaqx00840 • updated 5 months ago by Carlos Borroto1.8k
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Pysam fetch for records not exists in VCF files
pysam fetch written 2.0 years ago by always_learning930 • updated 5 months ago by Vasisht150
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Pysam read reference positions and sequence do not match
samtools pysam pileup tview written 12 months ago by rlorigro0 • updated 11 months ago by Biostar ♦♦ 20
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Error in pysam: trying to read BAM file using CYTHON
next-gen alignment pysam written 12 months ago by ammarsabir1550 • updated 12 months ago by Devon Ryan85k
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pysam not plotting exact values for coverage
alignment pysam coverage written 13 months ago by ammarsabir1550 • updated 13 months ago by Devon Ryan85k
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Error during htseq-count
htseq-count star pysam written 13 months ago by baffiak190210
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pysam: filtering reads based on flag
python samtools pysam hts written 3.3 years ago by QVINTVS_FABIVS_MAXIMVS2.1k • updated 15 months ago by Biostar ♦♦ 20
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Extract R2F1 reads
samtools pysam structural variation written 15 months ago by IP430
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Pysam changes bam format when printing
pysam written 16 months ago by grant.hovhannisyan1.1k • updated 16 months ago by i.sudbery2.6k
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 2.5 years ago by John12k
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How to filter/view reads mapped to multiple locations using samtools or pysam
python samtools pysam written 19 months ago by AlchemistMoz20 • updated 19 months ago by Tom_L290
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