Showing: pysamreset
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25
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2.0k
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4
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 12 months ago by John11k
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156
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3
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1
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177
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1
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2
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1
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114
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1
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Necessary to close pysam.AlignmentFile?
python bam pysam written 9 weeks ago by AlchemistMoz10 • updated 9 weeks ago by Devon Ryan64k
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153
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5
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193
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3
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1
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285
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1
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0
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1
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288
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1
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Filter low quality reads in bam files
python next-gen pysam written 4 months ago by ammarsabir1540 • updated 4 months ago by Brian Bushnell10k
2
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1
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257
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1
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Error Filtering BAM file based on mapping qualities in python's pysam
next-gen alignment pysam written 4 months ago by ammarsabir1540 • updated 4 months ago by John11k
0
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1
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232
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1
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For loop that continues finding matches in a file
python loop fastq pysam written 4 months ago by yarmda0 • updated 4 months ago by WouterDeCoster16k
1
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1
answer
216
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1
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pysam fetch with partial reference name
pysam python fetch bamfile substring written 5 months ago by yarmda0 • updated 5 months ago by Devon Ryan64k
2
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1
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261
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1
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3
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276
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1
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252
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0
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4
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2
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870
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2
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Pysam under pypy?
python pysam pypy written 2.2 years ago by John11k • updated 8 months ago by Eric T.1.6k
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335
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3
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2
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495
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2
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1
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1
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293
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1
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let me know examples of "pysam.view()" for counting BAM.
samtools view pysam written 9 months ago by mink2mink20 • updated 9 months ago by pld4.5k
14
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2
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758
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2
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6
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1
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393
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1
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Reads in BAM file overlapping coordinates
reads bam pysam snp written 11 months ago by madhavkurup19910 • updated 11 months ago by Jorge Amigo9.5k
4
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348
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0
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3
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2
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821
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2
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Pysam (python) problem parsing BAM reference id
python bam sam pysam written 12 months ago by liorglic10 • updated 12 months ago by Matt Shirley7.2k
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1
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843
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1
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Mate pair positions using pysam
python mate pair pysam written 21 months ago by QVINTVS_FABIVS_MAXIMVS1.6k • updated 13 months ago by horticulturesh0
2
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1
answer
634
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1
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obtaining a pileup with read names from a bam alignment
alignment next-gen samtools pysam mpileup written 14 months ago by bernardo196310 • updated 14 months ago by Devon Ryan64k
2
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2
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761
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2
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Problem iterating through BAM file using pysam
python sam bam forloop pysam written 14 months ago by c9r1y0 • updated 14 months ago by Matt Shirley7.2k
5
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515
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0
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Truncating BAM Files
bam samtools sam rna-seq pysam written 17 months ago by JameB110 • updated 15 months ago by Biostar ♦♦ 10
3
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1
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520
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1
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How to cache reads?
genome alignment sequence samtools pysam written 15 months ago by everrove0 • updated 15 months ago by Manuel Landesfeind1.0k
1
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1
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1.2k
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1
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understanding pysam pileup()
pysam pileup written 16 months ago by Goutham Atla7.1k
1
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3
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768
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3
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Reading CRAM files in pysam
python htslib samtools pysam cram written 16 months ago by QVINTVS_FABIVS_MAXIMVS1.6k • updated 16 months ago by duxan30
7
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3
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3.1k
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3
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cannot import pysam. Module has no attribute error
samtools api python pysam written 21 months ago by QVINTVS_FABIVS_MAXIMVS1.6k • updated 16 months ago by John11k
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