Showing: qcreset
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9
votes
6
answers
3.6k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.5 years ago by abc40 • updated 4.1 years ago by Biomonika (Noolean)3.0k
12
votes
4
answers
5.7k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 5.2 years ago by dataminer8950 • updated 5.2 years ago by Madelaine Gogol4.8k
22
votes
4
answers
11k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 3.4 years ago by Rad780
8
votes
4
answers
3.3k
views
4
answers
Cleaning RNA-Seq data from rRNA
rrna cleaning qc rna-seq written 19 months ago by debitboro70 • updated 6 months ago by h.mon9.2k
20
votes
3
answers
4.3k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.5 years ago by venkateshr89680 • updated 4.3 years ago by rob234king530
24
votes
3
answers
9.9k
views
25 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.5 years ago by Christian2.6k • updated 17 months ago by Michael Dondrup43k
2
votes
3
answers
624
views
3
answers
Cross-species contamination in NGS data
qc sequencing written 19 months ago by T40 • updated 19 months ago by h.mon9.2k
8
votes
3
answers
2.4k
views
3
answers
LD pruning and other QC before association analysis ?
gwas qc written 19 months ago by Picasa310 • updated 18 months ago by Nick30
4
votes
3
answers
4.4k
views
3
answers
FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 19 months ago by Shahzad10 • updated 10 weeks ago by Philipp Bayer4.8k
9
votes
3
answers
4.1k
views
3
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 18 months ago by chefarov80 • updated 16 months ago by Biostar ♦♦ 20
3
votes
3
answers
625
views
3
answers
Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
gwas qc ld population study written 16 months ago by Bahar40 • updated 16 months ago by chrchang5232.8k
7
votes
3
answers
306
views
5 follow
3
answers
Post alignment QC of RNA-seq data
qc fastqc written 9 weeks ago by KVC_bioinfo200 • updated 9 weeks ago by Brian Bushnell14k
3
votes
2
answers
5.9k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 5.9 years ago by KJ Lim110 • updated 5.9 years ago by Lim0
84
votes
2
answers
23k
views
45 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 5.2 years ago by Istvan Albert ♦♦ 74k • updated 2.9 years ago by caelyn520131410
3
votes
2
answers
2.6k
views
2
answers
7
votes
2
answers
4.9k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 4.7 years ago by Johan770 • updated 3.0 years ago by Kamil1.7k
18
votes
2
answers
3.8k
views
8 follow
2
answers
25
votes
2
answers
5.8k
views
17 follow
2
answers
8
votes
2
answers
5.7k
views
2
answers
4
votes
2
answers
1.5k
views
2
answers
QC and biological repeats of small RNA sequencing data
small rna-seq qc rna sequencing srna-seq srna written 2.9 years ago by kevolinchen30 • updated 2.8 years ago by Biostar ♦♦ 20
1
vote
2
answers
667
views
2
answers
QC of ChIPseq data (controlling false negatives)
chip-seq qc written 2.4 years ago by bio.abdul.kader80 • updated 2.3 years ago by Ying W3.7k
4
votes
2
answers
896
views
2
answers
Output per variant and per sample heterozygosity fraction from VCF.
vcf qc written 20 months ago by William4.0k • updated 20 months ago by Pierre Lindenbaum101k
7
votes
2
answers
761
views
2
answers
How do you remove coverage outliers in sequencing count data?
R quality control qc bisulfite sequencing written 19 months ago by biohack92130 • updated 19 months ago by dariober8.2k
14
votes
2
answers
1.2k
views
2
answers
Understanding Trimmomatic Sliding Window Approach
trimmomatic quality control qc rna-seq written 18 months ago by nikelle.petrillo70 • updated 18 months ago by biomaster180
4
votes
2
answers
1.3k
views
2
answers
reduced quality in a paired-end R2 reads
qc quality chip-seq rna-seq fastqc written 17 months ago by Assa Yeroslaviz1.1k • updated 17 months ago by Brian Bushnell14k
13
votes
2
answers
365
views
7 follow
2
answers
2
votes
2
answers
275
views
2
answers
trim_galore output: val_1 and val_2 files??
qc rna-seq written 5 months ago by radlinsky0 • updated 5 months ago by h.fushimi.x68910
2
votes
2
answers
325
views
5 follow
2
answers
What are the available methods to detect cross-sample contamination of NGS data?
ngs qc written 4 months ago by MAPK1.1k • updated 4 months ago by Brian Bushnell14k
3
votes
1
answer
1.1k
views
1
answer
Qc Of A New Study Sample In A Cost-Effective Way
array qc snp genotyping written 6.1 years ago by Thomas700 • updated 5.9 years ago by Matt Shirley8.0k
3
votes
1
answer
1.0k
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 6.0 years ago by Holly30 • updated 5.9 years ago by Chris Penkett470
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