Showing: qcreset
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9
votes
6
answers
3.3k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 3.9 years ago by abc40 • updated 3.5 years ago by Biomonika (Noolean)2.9k
12
votes
4
answers
5.0k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 4.6 years ago by dataminer8950 • updated 4.6 years ago by Madelaine Gogol4.8k
19
votes
4
answers
9.4k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 2.8 years ago by Rad740
20
votes
3
answers
3.9k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 3.9 years ago by venkateshr89640 • updated 3.7 years ago by rob234king520
22
votes
3
answers
8.0k
views
24 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 2.9 years ago by Christian2.5k • updated 10 months ago by Michael Dondrup41k
5
votes
3
answers
1.2k
views
3
answers
Cleaning RNA-Seq data from rRNA
rrna cleaning qc rna-seq written 12 months ago by debitboro50 • updated 12 months ago by Buffo260
2
votes
3
answers
446
views
3
answers
Cross-species contamination in NGS data
qc sequencing written 12 months ago by T40 • updated 12 months ago by h.mon5.3k
6
votes
3
answers
1.3k
views
3
answers
LD pruning and other QC before association analysis ?
gwas qc written 12 months ago by Picasa270 • updated 10 months ago by Nick20
4
votes
3
answers
2.3k
views
3
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 11 months ago by chefarov50 • updated 9 months ago by Biostar ♦♦ 10
3
votes
3
answers
411
views
3
answers
3
votes
2
answers
5.2k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 5.3 years ago by KJ Lim110 • updated 5.3 years ago by Lim0
83
votes
2
answers
22k
views
45 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 4.6 years ago by Istvan Albert ♦♦ 70k • updated 2.3 years ago by caelyn520131410
3
votes
2
answers
2.4k
views
2
answers
7
votes
2
answers
4.1k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 4.1 years ago by Johan750 • updated 2.4 years ago by Kamil1.4k
17
votes
2
answers
2.9k
views
8 follow
2
answers
8
votes
2
answers
4.9k
views
2
answers
4
votes
2
answers
1.3k
views
2
answers
QC and biological repeats of small RNA sequencing data
small rna-seq qc rna sequencing srna-seq srna written 2.3 years ago by kevolinchen20 • updated 2.2 years ago by Biostar ♦♦ 10
1
vote
2
answers
559
views
2
answers
QC of ChIPseq data (controlling false negatives)
chip-seq qc written 21 months ago by bio.abdul.kader80 • updated 21 months ago by Ying W3.5k
4
votes
2
answers
660
views
2
answers
Output per variant and per sample heterozygosity fraction from VCF.
vcf qc written 12 months ago by William3.8k • updated 12 months ago by Pierre Lindenbaum92k
7
votes
2
answers
561
views
2
answers
How do you remove coverage outliers in sequencing count data?
R quality control qc bisulfite sequencing written 12 months ago by biohack92130 • updated 12 months ago by dariober7.5k
1
vote
2
answers
2.5k
views
2
answers
FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 11 months ago by Shahzad0 • updated 9 weeks ago by mafer_3090
13
votes
2
answers
596
views
2
answers
Understanding Trimmomatic Sliding Window Approach
trimmomatic quality control qc rna-seq written 11 months ago by nikelle.petrillo70 • updated 11 months ago by biomaster140
3
votes
2
answers
750
views
2
answers
reduced quality in a paired-end R2 reads
qc quality chip-seq rna-seq fastqc written 10 months ago by Assa Yeroslaviz1.1k • updated 10 months ago by Brian Bushnell10k
3
votes
1
answer
968
views
1
answer
Qc Of A New Study Sample In A Cost-Effective Way
array qc snp genotyping written 5.5 years ago by Thomas680 • updated 5.3 years ago by Matt Shirley7.2k
3
votes
1
answer
922
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 5.4 years ago by Holly30 • updated 5.3 years ago by Chris Penkett470
0
votes
1
answer
2.0k
views
1
answer
6
votes
1
answer
824
views
1
answer
2-3 Example Datasets (References) With Known Variants?
exome variant qc written 5.2 years ago by Angel190 • updated 5.1 years ago by Pascal1.4k
3
votes
1
answer
2.4k
views
1
answer
Picard Bait And Target Sequences For Hybrid Selection Metrics
exome picard qc written 5.1 years ago by Dan D5.9k • updated 5.1 years ago by Sean Davis23k
12
votes
1
answer
1.5k
views
5 follow
1
answer
Duplication And Quality Control In Published Ngs Data
quality qc written 5.1 years ago by Ido Tamir4.7k • updated 5.1 years ago by Obi Griffith15k
3
votes
1
answer
1.7k
views
1
answer
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