Showing: qcreset
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9
votes
6
answers
3.5k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.3 years ago by abc40 • updated 3.9 years ago by Biomonika (Noolean)3.0k
12
votes
4
answers
5.4k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 5.0 years ago by dataminer8950 • updated 5.0 years ago by Madelaine Gogol4.8k
22
votes
4
answers
10k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 3.2 years ago by Rad780
8
votes
4
answers
2.6k
views
4
answers
Cleaning RNA-Seq data from rRNA
rrna cleaning qc rna-seq written 17 months ago by debitboro70 • updated 3 months ago by h.mon8.6k
20
votes
3
answers
4.2k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.3 years ago by venkateshr89650 • updated 4.2 years ago by rob234king530
24
votes
3
answers
9.4k
views
24 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.3 years ago by Christian2.5k • updated 15 months ago by Michael Dondrup43k
2
votes
3
answers
575
views
3
answers
Cross-species contamination in NGS data
qc sequencing written 17 months ago by T40 • updated 17 months ago by h.mon8.6k
6
votes
3
answers
2.0k
views
3
answers
LD pruning and other QC before association analysis ?
gwas qc written 17 months ago by Picasa300 • updated 15 months ago by Nick20
2
votes
3
answers
3.7k
views
3
answers
FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 16 months ago by Shahzad10 • updated 5 days ago by Philipp Bayer4.6k
9
votes
3
answers
3.5k
views
3
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 16 months ago by chefarov70 • updated 14 months ago by Biostar ♦♦ 20
3
votes
3
answers
558
views
3
answers
Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
gwas qc ld population study written 14 months ago by Bahar40 • updated 13 months ago by chrchang5232.6k
3
votes
2
answers
5.7k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 5.7 years ago by KJ Lim110 • updated 5.7 years ago by Lim0
84
votes
2
answers
23k
views
45 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 5.0 years ago by Istvan Albert ♦♦ 73k • updated 2.8 years ago by caelyn520131410
3
votes
2
answers
2.6k
views
2
answers
7
votes
2
answers
4.7k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 4.5 years ago by Johan770 • updated 2.8 years ago by Kamil1.6k
18
votes
2
answers
3.3k
views
8 follow
2
answers
8
votes
2
answers
5.5k
views
2
answers
4
votes
2
answers
1.5k
views
2
answers
QC and biological repeats of small RNA sequencing data
small rna-seq qc rna sequencing srna-seq srna written 2.7 years ago by kevolinchen30 • updated 2.6 years ago by Biostar ♦♦ 20
1
vote
2
answers
638
views
2
answers
QC of ChIPseq data (controlling false negatives)
chip-seq qc written 2.2 years ago by bio.abdul.kader80 • updated 2.2 years ago by Ying W3.6k
4
votes
2
answers
832
views
2
answers
Output per variant and per sample heterozygosity fraction from VCF.
vcf qc written 17 months ago by William3.9k • updated 17 months ago by Pierre Lindenbaum98k
7
votes
2
answers
697
views
2
answers
How do you remove coverage outliers in sequencing count data?
R quality control qc bisulfite sequencing written 17 months ago by biohack92130 • updated 17 months ago by dariober8.0k
13
votes
2
answers
984
views
2
answers
Understanding Trimmomatic Sliding Window Approach
trimmomatic quality control qc rna-seq written 16 months ago by nikelle.petrillo70 • updated 16 months ago by biomaster180
4
votes
2
answers
1.1k
views
2
answers
reduced quality in a paired-end R2 reads
qc quality chip-seq rna-seq fastqc written 15 months ago by Assa Yeroslaviz1.1k • updated 15 months ago by Brian Bushnell14k
13
votes
2
answers
308
views
7 follow
2
answers
2
votes
2
answers
174
views
2
answers
trim_galore output: val_1 and val_2 files??
qc rna-seq written 3 months ago by radlinsky0 • updated 3 months ago by h.fushimi.x68910
2
votes
2
answers
239
views
5 follow
2
answers
What are the available methods to detect cross-sample contamination of NGS data?
ngs qc written 8 weeks ago by MAPK1.0k • updated 8 weeks ago by Brian Bushnell14k
3
votes
1
answer
1.1k
views
1
answer
Qc Of A New Study Sample In A Cost-Effective Way
array qc snp genotyping written 5.9 years ago by Thomas700 • updated 5.7 years ago by Matt Shirley7.8k
3
votes
1
answer
999
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 5.8 years ago by Holly30 • updated 5.7 years ago by Chris Penkett470
0
votes
1
answer
2.2k
views
1
answer
6
votes
1
answer
906
views
1
answer
2-3 Example Datasets (References) With Known Variants?
exome variant qc written 5.6 years ago by Angel190 • updated 5.5 years ago by Pascal1.4k
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