Showing: qcreset
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9
votes
6
answers
3.0k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 3.6 years ago by abc40 • updated 3.3 years ago by Noolean2.8k
12
votes
4
answers
4.7k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 4.4 years ago by dataminer8950 • updated 4.4 years ago by Madelaine Gogol4.7k
19
votes
4
answers
8.7k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 2.5 years ago by Rad730
20
votes
3
answers
3.6k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 3.6 years ago by venkateshr89640 • updated 3.5 years ago by rob234king510
22
votes
3
answers
6.9k
views
24 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 2.6 years ago by Christian2.4k • updated 7 months ago by Michael Dondrup40k
5
votes
3
answers
836
views
3
answers
Cleaning RNA-Seq data from rRNA
rrna cleaning qc rna-seq written 9 months ago by debitboro50 • updated 9 months ago by callejas_callejas160
2
votes
3
answers
361
views
3
answers
Cross-species contamination in NGS data
qc sequencing written 9 months ago by T40 • updated 9 months ago by h.mon4.4k
6
votes
3
answers
824
views
3
answers
LD pruning and other QC before association analysis ?
gwas qc written 9 months ago by Picasa260 • updated 7 months ago by Nick20
4
votes
3
answers
1.5k
views
3
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 8 months ago by chefarov50 • updated 6 months ago by Biostar ♦♦ 10
3
votes
3
answers
305
views
3
answers
3
votes
2
answers
4.8k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 5.0 years ago by KJ Lim100 • updated 5.0 years ago by Lim0
81
votes
2
answers
21k
views
43 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 4.3 years ago by Istvan Albert ♦♦ 69k • updated 2.1 years ago by caelyn520131410
3
votes
2
answers
2.3k
views
2
answers
7
votes
2
answers
3.8k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 3.8 years ago by Johan730 • updated 2.1 years ago by Kamil1.4k
17
votes
2
answers
2.7k
views
8 follow
2
answers
8
votes
2
answers
4.4k
views
2
answers
4
votes
2
answers
1.2k
views
2
answers
QC and biological repeats of small RNA sequencing data
small rna-seq qc rna sequencing srna-seq srna written 2.0 years ago by kevolinchen20 • updated 23 months ago by Biostar ♦♦ 10
1
vote
2
answers
511
views
2
answers
QC of ChIPseq data (controlling false negatives)
chip-seq qc written 18 months ago by bio.abdul.kader80 • updated 18 months ago by Ying W3.5k
4
votes
2
answers
560
views
2
answers
Output per variant and per sample heterozygosity fraction from VCF.
vcf qc written 9 months ago by William3.6k • updated 9 months ago by Pierre Lindenbaum88k
7
votes
2
answers
483
views
2
answers
How do you remove coverage outliers in sequencing count data?
R quality control qc bisulfite sequencing written 9 months ago by biohack92130 • updated 9 months ago by dariober7.1k
13
votes
2
answers
422
views
2
answers
Understanding Trimmomatic Sliding Window Approach
trimmomatic quality control qc rna-seq written 8 months ago by nikelle.petrillo50 • updated 8 months ago by biomaster140
3
votes
2
answers
569
views
2
answers
reduced quality in a paired-end R2 reads
qc quality chip-seq rna-seq fastqc written 7 months ago by Assa Yeroslaviz1000 • updated 7 months ago by Brian Bushnell8.8k
3
votes
1
answer
926
views
1
answer
Qc Of A New Study Sample In A Cost-Effective Way
array qc snp genotyping written 5.2 years ago by Thomas660 • updated 5.0 years ago by Matt Shirley6.8k
3
votes
1
answer
878
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 5.1 years ago by Holly30 • updated 5.0 years ago by Chris Penkett460
0
votes
1
answer
1.9k
views
1
answer
6
votes
1
answer
780
views
1
answer
2-3 Example Datasets (References) With Known Variants?
exome variant qc written 4.9 years ago by Angel190 • updated 4.8 years ago by Pascal1.4k
3
votes
1
answer
2.2k
views
1
answer
Picard Bait And Target Sequences For Hybrid Selection Metrics
exome picard qc written 4.9 years ago by Dan D5.9k • updated 4.9 years ago by Sean Davis22k
12
votes
1
answer
1.5k
views
5 follow
1
answer
Duplication And Quality Control In Published Ngs Data
quality qc written 4.8 years ago by Ido Tamir4.6k • updated 4.8 years ago by Obi Griffith14k
3
votes
1
answer
1.6k
views
1
answer
4
votes
1
answer
1.6k
views
1
answer
Qualimap Settings For A Very Large Bam, Chunk Size And Number Of Windows
bam qc written 3.9 years ago by William3.6k • updated 3.7 years ago by Fennan30
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