Showing: qcreset
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9
votes
6
answers
3.8k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.9 years ago by abc40 • updated 4.5 years ago by Biomonika (Noolean)3.0k
12
votes
4
answers
6.0k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 5.6 years ago by dataminer8950 • updated 5.6 years ago by Madelaine Gogol4.9k
22
votes
4
answers
11k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 3.8 years ago by Rad790
8
votes
4
answers
4.9k
views
4
answers
Cleaning RNA-Seq data from rRNA
rrna cleaning qc rna-seq written 2.0 years ago by debitboro70 • updated 11 months ago by h.mon13k
9
votes
4
answers
5.6k
views
4
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 23 months ago by chefarov80 • updated 9 weeks ago by Stephane Plaisance360
20
votes
3
answers
4.7k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.9 years ago by venkateshr89680 • updated 4.7 years ago by rob234king550
24
votes
3
answers
11k
views
25 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.9 years ago by Christian2.6k • updated 22 months ago by Michael Dondrup43k
2
votes
3
answers
795
views
3
answers
Cross-species contamination in NGS data
qc sequencing written 2.0 years ago by T40 • updated 2.0 years ago by h.mon13k
9
votes
3
answers
3.3k
views
3
answers
LD pruning and other QC before association analysis ?
gwas qc written 2.0 years ago by Picasa340 • updated 22 months ago by Nick40
4
votes
3
answers
5.8k
views
3
answers
FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 24 months ago by Shahzad10 • updated 7 months ago by Philipp Bayer5.4k
3
votes
3
answers
809
views
3
answers
Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
gwas qc ld population study written 21 months ago by Bahar40 • updated 21 months ago by chrchang5233.1k
7
votes
3
answers
726
views
5 follow
3
answers
Post alignment QC of RNA-seq data
qc fastqc written 7 months ago by KVC_bioinfo310 • updated 7 months ago by Brian Bushnell15k
3
votes
2
answers
6.5k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 6.3 years ago by KJ Lim120 • updated 6.3 years ago by Lim0
88
votes
2
answers
24k
views
51 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 5.6 years ago by Istvan Albert ♦♦ 76k • updated 3.3 years ago by caelyn520131410
3
votes
2
answers
2.7k
views
2
answers
7
votes
2
answers
5.5k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 5.1 years ago by Johan770 • updated 3.4 years ago by Kamil1.8k
19
votes
2
answers
4.6k
views
8 follow
2
answers
27
votes
2
answers
6.2k
views
19 follow
2
answers
8
votes
2
answers
6.3k
views
2
answers
4
votes
2
answers
1.7k
views
2
answers
QC and biological repeats of small RNA sequencing data
small rna-seq qc rna sequencing srna-seq srna written 3.3 years ago by kevolinchen30 • updated 3.2 years ago by Biostar ♦♦ 20
1
vote
2
answers
767
views
2
answers
QC of ChIPseq data (controlling false negatives)
chip-seq qc written 2.8 years ago by FreeMindAlex90 • updated 2.8 years ago by Ying W3.8k
4
votes
2
answers
1.1k
views
2
answers
Output per variant and per sample heterozygosity fraction from VCF.
vcf qc written 2.1 years ago by William4.2k • updated 2.1 years ago by Pierre Lindenbaum106k
7
votes
2
answers
904
views
2
answers
How do you remove coverage outliers in sequencing count data?
R quality control qc bisulfite sequencing written 2.0 years ago by biohack92130 • updated 2.0 years ago by dariober9.0k
14
votes
2
answers
1.7k
views
2
answers
Understanding Trimmomatic Sliding Window Approach
trimmomatic quality control qc rna-seq written 23 months ago by nikelle.petrillo80 • updated 23 months ago by biomaster180
4
votes
2
answers
1.7k
views
2
answers
reduced quality in a paired-end R2 reads
qc quality chip-seq rna-seq fastqc written 22 months ago by Assa Yeroslaviz1.1k • updated 22 months ago by Brian Bushnell15k
13
votes
2
answers
506
views
7 follow
2
answers
2
votes
2
answers
579
views
2
answers
trim_galore output: val_1 and val_2 files??
qc rna-seq written 10 months ago by radlinsky0 • updated 10 months ago by h.fushimi.x68910
2
votes
2
answers
575
views
5 follow
2
answers
What are the available methods to detect cross-sample contamination of NGS data?
ngs qc written 9 months ago by MAPK1.2k • updated 9 months ago by Brian Bushnell15k
3
votes
1
answer
1.2k
views
1
answer
Qc Of A New Study Sample In A Cost-Effective Way
array qc snp genotyping written 6.5 years ago by Thomas720 • updated 6.3 years ago by Matt Shirley8.3k
3
votes
1
answer
1.1k
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 6.4 years ago by Holly30 • updated 6.3 years ago by Chris Penkett470
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