Showing: qcreset
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9
votes
6
answers
3.4k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.1 years ago by abc40 • updated 3.8 years ago by Biomonika (Noolean)2.9k
12
votes
4
answers
5.3k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 4.9 years ago by dataminer8950 • updated 4.9 years ago by Madelaine Gogol4.8k
22
votes
4
answers
10.0k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 3.0 years ago by Rad780
8
votes
4
answers
2.0k
views
4
answers
Cleaning RNA-Seq data from rRNA
rrna cleaning qc rna-seq written 15 months ago by debitboro60 • updated 8 weeks ago by h.mon7.3k
20
votes
3
answers
4.1k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.1 years ago by venkateshr89650 • updated 4.0 years ago by rob234king530
24
votes
3
answers
8.9k
views
24 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.1 years ago by Christian2.5k • updated 13 months ago by Michael Dondrup42k
2
votes
3
answers
532
views
3
answers
Cross-species contamination in NGS data
qc sequencing written 15 months ago by T40 • updated 15 months ago by h.mon7.3k
6
votes
3
answers
1.7k
views
3
answers
LD pruning and other QC before association analysis ?
gwas qc written 15 months ago by Picasa290 • updated 13 months ago by Nick20
5
votes
3
answers
3.0k
views
3
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 14 months ago by chefarov50 • updated 12 months ago by Biostar ♦♦ 20
3
votes
3
answers
499
views
3
answers
Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
gwas qc ld population study written 12 months ago by Bahar40 • updated 12 months ago by chrchang5232.4k
3
votes
2
answers
5.5k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 5.5 years ago by KJ Lim110 • updated 5.5 years ago by Lim0
84
votes
2
answers
23k
views
45 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 4.8 years ago by Istvan Albert ♦♦ 73k • updated 2.6 years ago by caelyn520131410
3
votes
2
answers
2.5k
views
2
answers
7
votes
2
answers
4.5k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 4.3 years ago by Johan760 • updated 2.6 years ago by Kamil1.5k
18
votes
2
answers
3.1k
views
8 follow
2
answers
8
votes
2
answers
5.2k
views
2
answers
4
votes
2
answers
1.4k
views
2
answers
QC and biological repeats of small RNA sequencing data
small rna-seq qc rna sequencing srna-seq srna written 2.5 years ago by kevolinchen30 • updated 2.4 years ago by Biostar ♦♦ 20
1
vote
2
answers
603
views
2
answers
QC of ChIPseq data (controlling false negatives)
chip-seq qc written 2.0 years ago by bio.abdul.kader80 • updated 2.0 years ago by Ying W3.6k
4
votes
2
answers
763
views
2
answers
Output per variant and per sample heterozygosity fraction from VCF.
vcf qc written 16 months ago by William3.9k • updated 16 months ago by Pierre Lindenbaum96k
7
votes
2
answers
644
views
2
answers
How do you remove coverage outliers in sequencing count data?
R quality control qc bisulfite sequencing written 15 months ago by biohack92130 • updated 15 months ago by dariober7.9k
2
votes
2
answers
3.2k
views
2
answers
FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 15 months ago by Shahzad10 • updated 5 months ago by mafer_3090
13
votes
2
answers
822
views
2
answers
Understanding Trimmomatic Sliding Window Approach
trimmomatic quality control qc rna-seq written 14 months ago by nikelle.petrillo70 • updated 14 months ago by biomaster150
3
votes
2
answers
956
views
2
answers
reduced quality in a paired-end R2 reads
qc quality chip-seq rna-seq fastqc written 13 months ago by Assa Yeroslaviz1.1k • updated 13 months ago by Brian Bushnell13k
13
votes
2
answers
271
views
7 follow
2
answers
2
votes
2
answers
114
views
2
answers
trim_galore output: val_1 and val_2 files??
qc rna-seq written 6 weeks ago by radlinsky0 • updated 6 weeks ago by h.fushimi.x68910
2
votes
2
answers
152
views
5 follow
2
answers
What are the available methods to detect cross-sample contamination of NGS data?
ngs qc written 5 days ago by MAPK980 • updated 4 days ago by Brian Bushnell13k
3
votes
1
answer
1.0k
views
1
answer
Qc Of A New Study Sample In A Cost-Effective Way
array qc snp genotyping written 5.7 years ago by Thomas700 • updated 5.5 years ago by Matt Shirley7.5k
3
votes
1
answer
973
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 5.6 years ago by Holly30 • updated 5.5 years ago by Chris Penkett470
0
votes
1
answer
2.1k
views
1
answer
6
votes
1
answer
878
views
1
answer
2-3 Example Datasets (References) With Known Variants?
exome variant qc written 5.4 years ago by Angel190 • updated 5.3 years ago by Pascal1.4k
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