Showing: qcreset
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Issues running RNAseqc on my bam file
picard qc bam rnaseqc rna written 7 weeks ago by vineelagangalapudi0 • updated 7 weeks ago by Pierre Lindenbaum102k
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RSeQC installation error
python ngs qc rseqc written 8 weeks ago by bioinfo890 • updated 8 weeks ago by h.mon9.7k
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should I merge fastq files for different lanes before do QC?
merge qc rna-seq written 11 weeks ago by Lila M 370 • updated 11 weeks ago by i.sudbery1.7k
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Error while installing RSeQC
rnaseq qc rseqc written 11 weeks ago by KVC_bioinfo230 • updated 11 weeks ago by WouterDeCoster24k
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Post alignment QC of RNA-seq data
qc fastqc written 12 weeks ago by KVC_bioinfo230 • updated 12 weeks ago by Brian Bushnell15k
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Dereplication step leads to increased file size
wgs metagenomics paired end qc written 4 months ago by aditijangid660 • updated 11 weeks ago by Ram12k
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What are the available methods to detect cross-sample contamination of NGS data?
ngs qc written 4 months ago by MAPK1.1k • updated 4 months ago by Brian Bushnell15k
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trim_galore output: val_1 and val_2 files??
qc rna-seq written 6 months ago by radlinsky0 • updated 6 months ago by h.fushimi.x68910
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vcftools QC process
vcf qc vcftools sequencing written 8 months ago by chengyi310000
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How to plot VCF missingness per sample (.imiss) and per variant (.lmiss) in python?
vcf qc plink vcftools written 9 months ago by William4.0k • updated 4 months ago by Biostar ♦♦ 20
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RNA-SeQC does not calculate information about "Strand Specificity"
qc rna-seq written 11 months ago by Lina F110 • updated 11 months ago by Charles Warden4.9k
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Yeast GTF file needed for RNA-SeQC run
gtf qc yeast rna-seq rna-seqc written 11 months ago by Lina F110 • updated 11 months ago by apa@stowers320
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RNA-seq quality control
next-gen alignment qc star rna-seq written 13 months ago by Ron670 • updated 13 months ago by Devon Ryan73k
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BLAST pipeline operations
assembly qc written 15 months ago by skbrimer430
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Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
gwas qc ld population study written 17 months ago by Bahar40 • updated 16 months ago by chrchang5232.8k
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reduced quality in a paired-end R2 reads
qc quality chip-seq rna-seq fastqc written 18 months ago by Assa Yeroslaviz1.1k • updated 18 months ago by Brian Bushnell15k
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Understanding Trimmomatic Sliding Window Approach
trimmomatic quality control qc rna-seq written 19 months ago by nikelle.petrillo70 • updated 19 months ago by biomaster180
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3' Bias in RNASEQ data
bias qc rna-seq written 19 months ago by mjg20 • updated 19 months ago by Chirag Nepal1.9k
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