Showing: qcreset
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What are the available methods to detect cross-sample contamination of NGS data?
ngs qc written 5 weeks ago by MAPK990 • updated 4 weeks ago by Brian Bushnell13k
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trim_galore output: val_1 and val_2 files??
qc rna-seq written 11 weeks ago by radlinsky0 • updated 10 weeks ago by h.fushimi.x68910
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vcftools QC process
vcf qc vcftools sequencing written 4 months ago by chengyi310000
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How to plot VCF missingness per sample (.imiss) and per variant (.lmiss) in python?
vcf qc plink vcftools written 5 months ago by William3.9k • updated 23 days ago by Biostar ♦♦ 20
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RNA-SeQC does not calculate information about "Strand Specificity"
qc rna-seq written 7 months ago by Lina F100 • updated 7 months ago by Charles Warden4.8k
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Yeast GTF file needed for RNA-SeQC run
gtf qc yeast rna-seq rna-seqc written 7 months ago by Lina F100 • updated 7 months ago by apa@stowers320
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RNA-seq quality control
next-gen alignment qc star rna-seq written 9 months ago by Ron600 • updated 9 months ago by Devon Ryan70k
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348
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BLAST pipeline operations
assembly qc written 11 months ago by skbrimer350
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Making Linkage Disequilibrium blocks from SNPs position for NCBI Build 38
gwas qc ld population study written 13 months ago by Bahar40 • updated 12 months ago by chrchang5232.5k
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reduced quality in a paired-end R2 reads
qc quality chip-seq rna-seq fastqc written 14 months ago by Assa Yeroslaviz1.1k • updated 14 months ago by Brian Bushnell13k
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Understanding Trimmomatic Sliding Window Approach
trimmomatic quality control qc rna-seq written 15 months ago by nikelle.petrillo70 • updated 15 months ago by biomaster170
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3' Bias in RNASEQ data
bias qc rna-seq written 15 months ago by mjg20 • updated 15 months ago by Chirag Nepal1.9k
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Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 15 months ago by chefarov70 • updated 13 months ago by Biostar ♦♦ 20
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Quality Control interpretation
qc microarray plot written 15 months ago by vahideh10 • updated 15 months ago by vchris_ngs3.8k
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FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 16 months ago by Shahzad10 • updated 6 months ago by mafer_3090
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How do you remove coverage outliers in sequencing count data?
R quality control qc bisulfite sequencing written 16 months ago by biohack92130 • updated 16 months ago by dariober8.0k
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LD pruning and other QC before association analysis ?
gwas qc written 16 months ago by Picasa300 • updated 14 months ago by Nick20
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