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<prev • 111 results • page 1 of 4 • next >
67
votes
0
answers
7.5k
views
65 follow
0
answers
Tutorial: Bioinformatics For Metagenomic Analyses
bioinformatics tutorial taxonomy qc metagenomics written 4.0 years ago by umer.zeeshan.ijaz • 1.7k
88
votes
2
answers
24k
views
51 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 5.6 years ago by Istvan Albert ♦♦ 76k • updated 3.4 years ago by caelyn5201314 • 10
24
votes
3
answers
11k
views
25 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.9 years ago by Christian • 2.6k • updated 22 months ago by Michael Dondrup ♦ 43k
27
votes
2
answers
6.2k
views
19 follow
2
answers
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 3.8 years ago by Malachi Griffith ♦ 16k • updated 5 months ago by anu014 • 140
22
votes
4
answers
11k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 3.8 years ago by Rad • 790
10
votes
1
answer
1.1k
views
9 follow
1
answer
should I merge fastq files for different lanes before do QC?
merge qc rna-seq written 6 months ago by Lila M • 370 • updated 6 months ago by i.sudbery • 1.9k
19
votes
2
answers
4.7k
views
8 follow
2
answers
Tool: deepTools: user-friendly tools for the normalization and visualization of deep-sequencing data
chip-seq visualisation qc tool rna-seq written 3.9 years ago by Björn • 640 • updated 3.5 years ago by xfliwz • 50
20
votes
3
answers
4.7k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.9 years ago by venkateshr89 • 680 • updated 4.7 years ago by rob234king • 550
9
votes
6
answers
3.8k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.9 years ago by abc • 40 • updated 4.5 years ago by Biomonika (Noolean) ♦ 3.0k
13
votes
2
answers
512
views
7 follow
2
answers
Tool: Collaboration on an empirical QC tool
qc tool rna-seq sequencing written 11 months ago by Michael Dondrup ♦ 43k
12
votes
4
answers
6.1k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 5.6 years ago by dataminer89 • 50 • updated 5.6 years ago by Madelaine Gogol ♦ 4.9k
13
votes
1
answer
1.9k
views
5 follow
1
answer
Duplication And Quality Control In Published Ngs Data
quality qc written 6.1 years ago by Ido Tamir ♦ 4.8k • updated 6.1 years ago by Obi Griffith ♦ 16k
7
votes
2
answers
5.5k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 5.1 years ago by Johan • 770 • updated 3.4 years ago by Kamil • 1.8k
2
votes
2
answers
580
views
5 follow
2
answers
What are the available methods to detect cross-sample contamination of NGS data?
ngs qc written 9 months ago by MAPK • 1.2k • updated 9 months ago by Brian Bushnell ♦ 15k
7
votes
3
answers
736
views
5 follow
3
answers
Post alignment QC of RNA-seq data
qc fastqc written 7 months ago by KVC_bioinfo • 310 • updated 7 months ago by Brian Bushnell ♦ 15k
3
votes
2
answers
6.5k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 6.3 years ago by KJ Lim • 120 • updated 6.3 years ago by Lim • 0
9
votes
0
answers
5.8k
views
0
answers
Tool: Rseqqc And Rna-Seqqc - Quality Control Software For Rna-Seq Data
qc tool rna-seq written 5.6 years ago by Istvan Albert ♦♦ 76k
3
votes
2
answers
2.7k
views
2
answers
Tool: Chance: Comprehensive Software For Quality Control And Validation Of Chip-Seq Data
chip-seq quality next-gen qc tool written 5.5 years ago by Aaron Diaz • 20 • updated 20 months ago by paul.e.gradie • 60
4
votes
1
answer
2.1k
views
1
answer
Qualimap Settings For A Very Large Bam, Chunk Size And Number Of Windows
bam qc written 5.2 years ago by William • 4.2k • updated 5.0 years ago by Fennan • 30
8
votes
2
answers
6.3k
views
2
answers
Checking kinship coefficients and relationships and comparing genotyping data to exomes
vcf pedigree kinship qc snp written 3.6 years ago by Dan Gaston ♦ 7.0k • updated 2.2 years ago by SteveL • 30
2
votes
2
answers
584
views
2
answers
trim_galore output: val_1 and val_2 files??
qc rna-seq written 10 months ago by radlinsky • 0 • updated 10 months ago by h.fushimi.x689 • 10
3
votes
0
answers
285
views
0
answers
QC of Fastq files
qc sequencing written 3 months ago by raya.girish • 20
1
vote
0
answers
269
views
0
answers
fastqc "Too many tiles (>500) so giving up trying to do per-tile qualities since we're probably parsing the file wrongly"
qc fastqc written 7 weeks ago by josh.cutts1 • 0
3
votes
1
answer
1.1k
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 6.4 years ago by Holly • 30 • updated 6.3 years ago by Chris Penkett • 470
3
votes
1
answer
1.9k
views
1
answer
String Of "B" In Illumina Qseq Files From Paired-End Sequencing Run - Yet Qc Passed
illumina paired next-gen qc sequencing written 6.1 years ago by Sebastian Kurscheid • 300 • updated 6.1 years ago by Eric Fournier • 1.4k
0
votes
1
answer
3.2k
views
1
answer
How To Determine Pcr Duplicate/Redundant Reads In Ngs Data?
duplicates qc pcr written 4.7 years ago by JacobS • 870 • updated 4.7 years ago by Istvan Albert ♦♦ 76k
2
votes
1
answer
2.1k
views
1
answer
Permission Denied Error While Using Quake
assembly qc written 4.5 years ago by Medhat • 7.5k
3
votes
1
answer
3.9k
views
1
answer
How To Use Cutadapt Effectively
qc primer written 4.5 years ago by roll • 200 • updated 3.2 years ago by Biostar ♦♦ 20
2
votes
0
answers
1.4k
views
0
answers
Fastq_Screen Does Not Detect Any Of The Contaminants
qc fastqc written 4.5 years ago by roll • 200
1
vote
1
answer
2.5k
views
1
answer
To Understand The Output Of The Diagnosetarget And Depthofcoverage Walker In Gatk
gatk exome-sequencing qc written 4.4 years ago by vchris_ngs • 4.4k • updated 4.3 years ago by JuJo • 10
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