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<prev • 91 results • page 1 of 4 • next >
67
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0
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6.7k
views
65 follow
0
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Tutorial: Bioinformatics For Metagenomic Analyses
bioinformatics tutorial taxonomy qc metagenomics written 3.3 years ago by umer.zeeshan.ijaz • 1.7k
84
votes
2
answers
23k
views
45 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 4.8 years ago by Istvan Albert ♦♦ 73k • updated 2.6 years ago by caelyn5201314 • 10
24
votes
3
answers
8.9k
views
24 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.1 years ago by Christian • 2.5k • updated 13 months ago by Michael Dondrup ♦ 42k
24
votes
1
answer
5.4k
views
14 follow
1
answer
Tool: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
trimmer read trimming qc tool written 3.1 years ago by Malachi Griffith ♦ 15k
22
votes
4
answers
9.9k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 3.0 years ago by Rad • 780
18
votes
2
answers
3.1k
views
8 follow
2
answers
Tool: deepTools: user-friendly tools for the normalization and visualization of deep-sequencing data
chip-seq visualisation qc tool rna-seq written 3.2 years ago by Björn • 610 • updated 2.7 years ago by xfliwz • 50
20
votes
3
answers
4.1k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.1 years ago by venkateshr89 • 650 • updated 4.0 years ago by rob234king • 530
9
votes
6
answers
3.4k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.1 years ago by abc • 40 • updated 3.8 years ago by Biomonika (Noolean) ♦ 2.9k
13
votes
2
answers
271
views
7 follow
2
answers
Tool: Collaboration on an empirical QC tool
qc tool rna-seq sequencing written 9 weeks ago by Michael Dondrup ♦ 42k
12
votes
4
answers
5.3k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 4.9 years ago by dataminer89 • 50 • updated 4.9 years ago by Madelaine Gogol ♦ 4.8k
12
votes
1
answer
1.6k
views
5 follow
1
answer
Duplication And Quality Control In Published Ngs Data
quality qc written 5.3 years ago by Ido Tamir ♦ 4.7k • updated 5.3 years ago by Obi Griffith ♦ 15k
7
votes
2
answers
4.5k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 4.3 years ago by Johan • 760 • updated 2.6 years ago by Kamil • 1.5k
2
votes
2
answers
146
views
5 follow
2
answers
What are the available methods to detect cross-sample contamination of NGS data?
ngs qc written 4 days ago by MAPK • 980 • updated 3 days ago by Brian Bushnell ♦ 13k
3
votes
2
answers
5.5k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 5.5 years ago by KJ Lim • 110 • updated 5.5 years ago by Lim • 0
9
votes
0
answers
5.4k
views
0
answers
Tool: Rseqqc And Rna-Seqqc - Quality Control Software For Rna-Seq Data
qc tool rna-seq written 4.9 years ago by Istvan Albert ♦♦ 73k
3
votes
2
answers
2.5k
views
2
answers
Tool: Chance: Comprehensive Software For Quality Control And Validation Of Chip-Seq Data
chip-seq quality next-gen qc tool written 4.7 years ago by Aaron Diaz • 20 • updated 11 months ago by paul.e.gradie • 60
4
votes
1
answer
1.8k
views
1
answer
Qualimap Settings For A Very Large Bam, Chunk Size And Number Of Windows
bam qc written 4.4 years ago by William • 3.9k • updated 4.3 years ago by Fennan • 30
8
votes
2
answers
5.2k
views
2
answers
Checking kinship coefficients and relationships and comparing genotyping data to exomes
vcf pedigree kinship qc snp written 2.9 years ago by Dan Gaston ♦ 6.8k • updated 18 months ago by SteveL • 30
2
votes
2
answers
113
views
2
answers
trim_galore output: val_1 and val_2 files??
qc rna-seq written 6 weeks ago by radlinsky • 0 • updated 6 weeks ago by h.fushimi.x689 • 10
3
votes
1
answer
970
views
1
answer
Seq Qc/Trimming Code Preferences?
qc trimming next-gen rna written 5.6 years ago by Holly • 30 • updated 5.5 years ago by Chris Penkett • 470
3
votes
1
answer
1.7k
views
1
answer
String Of "B" In Illumina Qseq Files From Paired-End Sequencing Run - Yet Qc Passed
illumina paired next-gen qc sequencing written 5.3 years ago by Sebastian Kurscheid • 300 • updated 5.3 years ago by Eric Fournier • 1.4k
0
votes
1
answer
2.7k
views
1
answer
How To Determine Pcr Duplicate/Redundant Reads In Ngs Data?
duplicates qc pcr written 4.0 years ago by JacobS • 850 • updated 3.9 years ago by Istvan Albert ♦♦ 73k
2
votes
1
answer
1.8k
views
1
answer
Permission Denied Error While Using Quake
assembly qc written 3.8 years ago by Medhat • 6.7k
3
votes
1
answer
3.4k
views
1
answer
How To Use Cutadapt Effectively
qc primer written 3.8 years ago by roll • 160 • updated 2.4 years ago by Biostar ♦♦ 20
2
votes
0
answers
1.2k
views
0
answers
Fastq_Screen Does Not Detect Any Of The Contaminants
qc fastqc written 3.8 years ago by roll • 160
1
vote
1
answer
2.1k
views
1
answer
To Understand The Output Of The Diagnosetarget And Depthofcoverage Walker In Gatk
gatk exome-sequencing qc written 3.6 years ago by vchris_ngs • 3.6k • updated 3.5 years ago by JuJo • 10
8
votes
1
answer
1.4k
views
1
answer
How To Handle Ns In The Middle Of Reads
qc fastqc written 3.5 years ago by kautilya • 340 • updated 2.3 years ago by Gabriel R. • 1.9k
3
votes
1
answer
1.3k
views
1
answer
Keeping A Set Of Data For Qc In Plink
data qc plink dataset written 3.4 years ago by tom.d.brocklehurst • 0 • updated 3.4 years ago by zx8754 ♦ 3.7k
9
votes
0
answers
1.1k
views
0
answers
RNA-SeQC, EVER-seq, RSeQC and CollectRnaSeqMetrics, which to use and *why*?
qc rna-seq written 2.2 years ago by Niek De Klein • 2.4k
4
votes
1
answer
400
views
1
answer
Alignment stats summary by STAR aligner, please help!
alignment qc star rna-seq written 6 months ago by Jackie • 40
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