Showing: qcreset
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83
votes
2
answers
22k
views
45 follow
2
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Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 4.7 years ago by Istvan Albert ♦♦ 71k • updated 2.4 years ago by caelyn520131410
20
votes
4
answers
9.6k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 2.9 years ago by Rad760
23
votes
3
answers
8.3k
views
24 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.0 years ago by Christian2.5k • updated 11 months ago by Michael Dondrup41k
67
votes
0
answers
6.5k
views
65 follow
0
answers
6
votes
1
answer
5.9k
views
1
answer
trimming fastq files with Trimmomatic
qc rna-seq written 24 months ago by rodrigo.duarte8810 • updated 24 months ago by Brice Sarver2.3k
24
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1
answer
5.3k
views
14 follow
1
answer
3
votes
2
answers
5.3k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 5.4 years ago by KJ Lim110 • updated 5.4 years ago by Lim0
9
votes
0
answers
5.3k
views
0
answers
12
votes
4
answers
5.1k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 4.7 years ago by dataminer8950 • updated 4.7 years ago by Madelaine Gogol4.8k
8
votes
2
answers
5.0k
views
2
answers
7
votes
2
answers
4.2k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 4.2 years ago by Johan750 • updated 2.4 years ago by Kamil1.5k
20
votes
3
answers
3.9k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.0 years ago by venkateshr89650 • updated 3.8 years ago by rob234king520
9
votes
6
answers
3.3k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.0 years ago by abc40 • updated 3.6 years ago by Biomonika (Noolean)2.9k
3
votes
1
answer
3.3k
views
1
answer
How To Use Cutadapt Effectively
qc primer written 3.6 years ago by roll160 • updated 2.3 years ago by Biostar ♦♦ 20
17
votes
2
answers
2.9k
views
8 follow
2
answers
2
votes
2
answers
2.8k
views
2
answers
FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 13 months ago by Shahzad10 • updated 3 months ago by mafer_3090
0
votes
1
answer
2.6k
views
1
answer
How To Determine Pcr Duplicate/Redundant Reads In Ngs Data?
duplicates qc pcr written 3.8 years ago by JacobS850 • updated 3.8 years ago by Istvan Albert ♦♦ 71k
4
votes
3
answers
2.5k
views
3
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 12 months ago by chefarov50 • updated 10 months ago by Biostar ♦♦ 20
3
votes
1
answer
2.5k
views
1
answer
Rna-Seq Read Mapping Stats/Metrics
alignment qc rna-seq written 3.8 years ago by pm201350 • updated 3.8 years ago by Mikael Huss4.4k
3
votes
2
answers
2.5k
views
2
answers
3
votes
1
answer
2.4k
views
1
answer
Picard Bait And Target Sequences For Hybrid Selection Metrics
exome picard qc written 5.2 years ago by Dan D5.9k • updated 5.2 years ago by Sean Davis23k
7
votes
1
answer
2.2k
views
1
answer
Low transition/transversion ratio: alignment or caller problem?
vcf somatic qc whole genome written 2.9 years ago by DoubleD130 • updated 2.9 years ago by Cyriac Kandoth4.5k
0
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1
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2.1k
views
1
answer
1
vote
1
answer
2.0k
views
1
answer
5
votes
1
answer
1.8k
views
1
answer
Overrepresented Sequences Question
qc written 3.7 years ago by Tonyzeng250 • updated 2.4 years ago by Biostar ♦♦ 20
0
votes
0
answers
1.8k
views
0
answers
MACH imputation result QC
imputation rsq mach qc snp written 2.8 years ago by Zhenyu150
2
votes
1
answer
1.7k
views
1
answer
Permission Denied Error While Using Quake
assembly qc written 3.6 years ago by Medhat6.4k
4
votes
1
answer
1.7k
views
1
answer
Qualimap Settings For A Very Large Bam, Chunk Size And Number Of Windows
bam qc written 4.2 years ago by William3.8k • updated 4.1 years ago by Fennan30
0
votes
1
answer
1.7k
views
1
answer
Paired End Trimmomatic producing asymmetric paired read files.
trimmomatic qc rna-seq written 16 months ago by Biogeek230 • updated 16 months ago by Goutham Atla7.1k
3
votes
1
answer
1.7k
views
1
answer
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