Showing: qcreset
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84
votes
2
answers
23k
views
45 follow
2
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Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 5.2 years ago by Istvan Albert ♦♦ 75k • updated 3.0 years ago by caelyn520131410
22
votes
4
answers
11k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 3.4 years ago by Rad780
24
votes
3
answers
10k
views
25 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.5 years ago by Christian2.6k • updated 18 months ago by Michael Dondrup43k
8
votes
1
answer
8.5k
views
1
answer
trimming fastq files with Trimmomatic
qc rna-seq written 2.5 years ago by rodrigo.duarte8810 • updated 2.5 years ago by Brice Sarver2.4k
67
votes
0
answers
7.1k
views
65 follow
0
answers
3
votes
2
answers
6.0k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 5.9 years ago by KJ Lim110 • updated 5.9 years ago by Lim0
25
votes
2
answers
5.9k
views
17 follow
2
answers
8
votes
2
answers
5.8k
views
2
answers
12
votes
4
answers
5.8k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 5.3 years ago by dataminer8950 • updated 5.3 years ago by Madelaine Gogol4.8k
9
votes
0
answers
5.6k
views
0
answers
7
votes
2
answers
5.0k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 4.7 years ago by Johan770 • updated 3.0 years ago by Kamil1.7k
4
votes
3
answers
4.7k
views
3
answers
FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 19 months ago by Shahzad10 • updated 3 months ago by Philipp Bayer5.0k
20
votes
3
answers
4.4k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 4.6 years ago by venkateshr89680 • updated 4.4 years ago by rob234king530
9
votes
3
answers
4.4k
views
3
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 19 months ago by chefarov80 • updated 17 months ago by Biostar ♦♦ 20
18
votes
2
answers
4.0k
views
8 follow
2
answers
3
votes
1
answer
3.6k
views
1
answer
How To Use Cutadapt Effectively
qc primer written 4.2 years ago by roll160 • updated 2.9 years ago by Biostar ♦♦ 20
9
votes
6
answers
3.6k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.5 years ago by abc40 • updated 4.2 years ago by Biomonika (Noolean)3.0k
8
votes
4
answers
3.5k
views
4
answers
Cleaning RNA-Seq data from rRNA
rrna cleaning qc rna-seq written 20 months ago by debitboro70 • updated 6 months ago by h.mon9.8k
0
votes
1
answer
3.0k
views
1
answer
How To Determine Pcr Duplicate/Redundant Reads In Ngs Data?
duplicates qc pcr written 4.4 years ago by JacobS850 • updated 4.4 years ago by Istvan Albert ♦♦ 75k
3
votes
1
answer
2.8k
views
1
answer
Rna-Seq Read Mapping Stats/Metrics
alignment qc rna-seq written 4.4 years ago by pm201350 • updated 4.4 years ago by Mikael Huss4.5k
3
votes
1
answer
2.7k
views
1
answer
Picard Bait And Target Sequences For Hybrid Selection Metrics
exome picard qc written 5.8 years ago by Dan D6.3k • updated 5.8 years ago by Sean Davis24k
3
votes
2
answers
2.6k
views
2
answers
8
votes
3
answers
2.6k
views
3
answers
LD pruning and other QC before association analysis ?
gwas qc written 20 months ago by Picasa320 • updated 18 months ago by Nick30
1
vote
1
answer
2.6k
views
1
answer
Paired End Trimmomatic producing asymmetric paired read files.
trimmomatic qc rna-seq written 23 months ago by Biogeek260 • updated 23 months ago by geek_y8.1k
7
votes
1
answer
2.5k
views
1
answer
Low transition/transversion ratio: alignment or caller problem?
vcf somatic qc whole genome written 3.5 years ago by DoubleD130 • updated 3.5 years ago by Cyriac Kandoth4.7k
0
votes
1
answer
2.3k
views
1
answer
1
vote
1
answer
2.3k
views
1
answer
5
votes
1
answer
2.2k
views
1
answer
Overrepresented Sequences Question
qc written 4.3 years ago by Tonyzeng250 • updated 3.0 years ago by Biostar ♦♦ 20
1
vote
1
answer
2.1k
views
1
answer
3' Bias in RNASEQ data
bias qc rna-seq written 19 months ago by mjg20 • updated 19 months ago by Chirag Nepal1.9k
3
votes
0
answers
2.0k
views
0
answers
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