Showing: qcreset
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89
votes
2
answers
24k
views
53 follow
2
answers
Tutorial: Fastq Quality Control Shootout
trimming fastq qc quality tutorial written 5.7 years ago by Istvan Albert ♦♦ 76k • updated 3.4 years ago by caelyn520131410
22
votes
4
answers
11k
views
11 follow
4
answers
FastQ quality check : what can we correct ?
fastq qc written 3.9 years ago by Rad790
24
votes
3
answers
11k
views
25 follow
3
answers
Which software do you use for RNA-seq data quality control?
qc quality-control rna-seq written 3.9 years ago by Christian2.6k • updated 23 months ago by Michael Dondrup44k
8
votes
1
answer
10k
views
1
answer
trimming fastq files with Trimmomatic
qc rna-seq written 3.0 years ago by rodrigo.duarte8810 • updated 3.0 years ago by Brice Sarver2.4k
67
votes
0
answers
7.6k
views
65 follow
0
answers
3
votes
2
answers
6.6k
views
2
answers
What Does Qc-Passed/Failed Reads Mean In Samtools Flagstat?
samtools qc written 6.4 years ago by KJ Lim120 • updated 6.4 years ago by Lim0
12
votes
2
answers
6.4k
views
5 follow
2
answers
27
votes
2
answers
6.3k
views
19 follow
2
answers
4
votes
3
answers
6.2k
views
3
answers
FastQC not making html output report.
adapter trim ngs qc rna-seq fastqc written 2.1 years ago by Shahzad10 • updated 8 months ago by Philipp Bayer5.4k
12
votes
4
answers
6.1k
views
6 follow
4
answers
Looking For Reliable Tools To Do Quality Filtering Of Fastq Files
fastq qc written 5.7 years ago by dataminer8950 • updated 5.7 years ago by Madelaine Gogol4.9k
9
votes
0
answers
5.9k
views
0
answers
9
votes
4
answers
5.9k
views
4
answers
Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 2.0 years ago by chefarov80 • updated 3 months ago by Stephane Plaisance360
7
votes
2
answers
5.6k
views
5 follow
2
answers
Ribosomal Intervals For Collectrnaseqmetrics
picard qc rna-seq written 5.2 years ago by Johan770 • updated 3.4 years ago by Kamil1.8k
8
votes
4
answers
5.2k
views
4
answers
Cleaning RNA-Seq data from rRNA
rrna cleaning qc rna-seq written 2.1 years ago by debitboro70 • updated 12 months ago by h.mon14k
19
votes
2
answers
4.8k
views
8 follow
2
answers
20
votes
3
answers
4.7k
views
7 follow
3
answers
Transition/Transversion Ratio From Fastq Files
fastq fastqc exome-sequencing qc exome qualitycontrol written 5.0 years ago by venkateshr89680 • updated 4.8 years ago by rob234king550
3
votes
1
answer
3.9k
views
1
answer
How To Use Cutadapt Effectively
qc primer written 4.6 years ago by roll210 • updated 3.3 years ago by Biostar ♦♦ 20
9
votes
6
answers
3.9k
views
7 follow
6
answers
Illumina Mate Pair Read Duplication Level
illumina qc written 4.9 years ago by abc40 • updated 4.6 years ago by Biomonika (Noolean)3.0k
9
votes
3
answers
3.6k
views
3
answers
LD pruning and other QC before association analysis ?
gwas qc written 2.1 years ago by Picasa350 • updated 23 months ago by Nick40
1
vote
1
answer
3.3k
views
1
answer
Paired End Trimmomatic producing asymmetric paired read files.
trimmomatic qc rna-seq written 2.4 years ago by Biogeek270 • updated 2.4 years ago by geek_y8.5k
0
votes
1
answer
3.3k
views
1
answer
How To Determine Pcr Duplicate/Redundant Reads In Ngs Data?
duplicates qc pcr written 4.8 years ago by JacobS870 • updated 4.8 years ago by Istvan Albert ♦♦ 76k
3
votes
1
answer
3.0k
views
1
answer
Rna-Seq Read Mapping Stats/Metrics
alignment qc rna-seq written 4.8 years ago by pm201350 • updated 4.8 years ago by Mikael Huss4.6k
3
votes
1
answer
3.0k
views
1
answer
Picard Bait And Target Sequences For Hybrid Selection Metrics
exome picard qc written 6.2 years ago by Dan D6.4k • updated 6.2 years ago by Sean Davis24k
7
votes
1
answer
2.9k
views
1
answer
Low transition/transversion ratio: alignment or caller problem?
vcf somatic qc whole genome written 3.9 years ago by DoubleD130 • updated 3.9 years ago by Cyriac Kandoth4.9k
3
votes
2
answers
2.8k
views
2
answers
1
vote
1
answer
2.8k
views
1
answer
3' Bias in RNASEQ data
bias qc rna-seq written 2.0 years ago by mjg20 • updated 2.0 years ago by Chirag Nepal2.0k
0
votes
1
answer
2.6k
views
1
answer
1
vote
1
answer
2.5k
views
1
answer
5
votes
1
answer
2.4k
views
1
answer
Overrepresented Sequences Question
qc written 4.7 years ago by Tonyzeng280 • updated 3.4 years ago by Biostar ♦♦ 20
3
votes
0
answers
2.3k
views
0
answers
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